Wall clock time and date at job start Fri Apr 10 2020 18:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99690 * 2 1 4 4 H 1.48500 * 109.47206 * 264.99247 * 3 2 1 5 5 H 1.48502 * 109.47411 * 24.99421 * 3 2 1 6 6 H 1.48508 * 109.46951 * 144.99426 * 3 2 1 7 7 C 1.37869 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99923 * 185.52962 * 7 2 1 9 9 C 1.50693 * 120.00046 * 5.52749 * 7 2 1 10 10 O 1.42902 * 110.28903 * 59.02035 * 9 7 2 11 11 C 1.54254 * 110.32723 * 296.89330 * 9 7 2 12 12 C 1.54385 * 105.06088 * 241.10570 * 11 9 7 13 13 N 1.48556 * 104.59281 * 23.84705 * 12 11 9 14 14 C 1.46907 * 110.99783 * 200.95953 * 13 12 11 15 15 C 1.52997 * 109.47177 * 290.13001 * 14 13 12 16 16 H 1.08997 * 109.47165 * 60.00271 * 15 14 13 17 17 O 1.42896 * 109.47327 * 299.99785 * 15 14 13 18 18 C 1.52999 * 109.46943 * 180.02562 * 15 14 13 19 19 C 1.52998 * 109.47214 * 185.45218 * 18 15 14 20 20 O 1.42900 * 109.47066 * 300.30384 * 19 18 15 21 21 C 1.53005 * 109.47349 * 180.30118 * 19 18 15 22 22 C 1.52994 * 109.47072 * 180.02562 * 21 19 18 23 23 C 1.53006 * 109.47535 * 59.99928 * 22 21 19 24 24 C 1.52997 * 109.46854 * 299.99962 * 23 22 21 25 25 C 1.52998 * 109.47296 * 59.99933 * 24 23 22 26 26 C 1.48556 * 104.22749 * 320.52034 * 13 12 11 27 27 H 0.97008 * 120.00015 * 0.02562 * 1 2 3 28 28 H 0.96697 * 113.99665 * 305.16322 * 10 9 7 29 29 H 1.08999 * 110.32245 * 359.97438 * 11 9 7 30 30 H 1.09000 * 110.32694 * 122.10426 * 11 9 7 31 31 H 1.09000 * 110.41297 * 142.62960 * 12 11 9 32 32 H 1.09008 * 110.40711 * 265.06974 * 12 11 9 33 33 H 1.08996 * 109.46993 * 50.13230 * 14 13 12 34 34 H 1.08997 * 109.46852 * 170.13081 * 14 13 12 35 35 H 0.96701 * 114.00403 * 300.00620 * 17 15 14 36 36 H 1.09004 * 109.47299 * 305.45130 * 18 15 14 37 37 H 1.09002 * 109.47372 * 65.45181 * 18 15 14 38 38 H 0.96703 * 113.99986 * 180.02562 * 20 19 18 39 39 H 1.09002 * 109.46646 * 300.00175 * 21 19 18 40 40 H 1.08993 * 109.46947 * 60.00109 * 21 19 18 41 41 H 1.09000 * 109.47167 * 300.00035 * 22 21 19 42 42 H 1.09006 * 109.47232 * 180.02562 * 22 21 19 43 43 H 1.08993 * 109.47167 * 179.97438 * 23 22 21 44 44 H 1.09000 * 109.46805 * 59.99886 * 23 22 21 45 45 H 1.09000 * 109.47352 * 299.99588 * 24 23 22 46 46 H 1.09004 * 109.46756 * 179.97438 * 24 23 22 47 47 H 1.08998 * 109.47435 * 179.97438 * 25 24 23 48 48 H 1.09000 * 109.47201 * 59.99563 * 25 24 23 49 49 H 1.09006 * 110.40750 * 280.70757 * 26 13 12 50 50 H 1.08993 * 110.41540 * 158.26150 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6024 1.9854 -1.3947 5 1 1.3976 2.6810 0.5916 6 1 3.4898 1.4731 0.8032 7 6 2.0045 -1.1940 0.0005 8 1 3.0808 -1.1961 0.0907 9 6 1.2563 -2.4961 -0.1246 10 8 0.5101 -2.5236 -1.3430 11 6 0.3173 -2.6927 1.0833 12 6 0.8107 -3.9852 1.7687 13 7 2.2328 -4.1078 1.3569 14 6 2.7042 -5.4920 1.4981 15 6 2.8104 -5.8457 2.9828 16 1 1.8312 -5.7459 3.4510 17 8 3.7348 -4.9605 3.6184 18 6 3.3021 -7.2870 3.1298 19 6 3.2789 -7.6857 4.6067 20 8 4.1275 -6.8087 5.3502 21 6 3.7776 -9.1246 4.7545 22 6 3.7538 -9.5235 6.2313 23 6 2.3230 -9.4224 6.7640 24 6 1.8244 -7.9835 6.6163 25 6 1.8481 -7.5846 5.1394 26 6 2.2380 -3.6862 -0.0676 27 1 -0.4850 0.8401 -0.0004 28 1 -0.0902 -1.7736 -1.4535 29 1 0.3979 -1.8477 1.7670 30 1 -0.7128 -2.8103 0.7470 31 1 0.7352 -3.8935 2.8522 32 1 0.2380 -4.8438 1.4181 33 1 1.9992 -6.1671 1.0132 34 1 3.6834 -5.5918 1.0298 35 1 4.6290 -4.9961 3.2519 36 1 2.6506 -7.9527 2.5635 37 1 4.3203 -7.3643 2.7485 38 1 4.1617 -7.0034 6.2968 39 1 3.1303 -9.7935 4.1873 40 1 4.7967 -9.1967 4.3747 41 1 4.4008 -8.8546 6.7988 42 1 4.1095 -10.5484 6.3367 43 1 2.3061 -9.7069 7.8160 44 1 1.6760 -10.0913 6.1966 45 1 2.4714 -7.3146 7.1837 46 1 0.8049 -7.9116 6.9954 47 1 1.4924 -6.5597 5.0341 48 1 1.2011 -8.2535 4.5719 49 1 1.8887 -4.4981 -0.7055 50 1 3.2371 -3.3695 -0.3667 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878761565.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:56 Heat of formation + Delta-G solvation = -165.035245 kcal Electronic energy + Delta-G solvation = -28007.840418 eV Core-core repulsion = 24226.911365 eV Total energy + Delta-G solvation = -3780.929053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.209 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.15833 -38.47988 -36.75208 -34.81920 -34.42965 -32.20678 -32.02661 -31.12937 -30.28616 -28.19424 -27.69062 -25.46135 -23.97559 -23.16944 -21.99484 -20.97570 -20.06471 -19.65157 -19.25648 -17.31548 -16.99394 -16.24103 -15.76588 -15.13514 -14.99496 -14.83533 -14.74589 -14.45448 -14.09862 -13.84806 -13.75466 -13.69302 -13.07012 -13.00917 -12.51776 -12.44302 -12.14901 -11.92373 -11.68357 -11.65017 -11.61920 -11.41458 -11.27632 -11.14467 -10.95877 -10.90369 -10.85814 -10.50787 -10.47884 -10.37055 -10.27608 -10.22611 -9.92155 -9.70747 -9.29346 -8.90312 -8.53402 -8.05098 -7.68849 -6.09480 -4.15055 3.31843 3.37784 3.42766 4.13762 4.21633 4.40054 4.41724 4.49578 4.56042 4.80618 4.84222 4.97228 5.02076 5.12797 5.18443 5.20022 5.27334 5.33249 5.36957 5.44873 5.54858 5.59917 5.69775 5.72816 5.76163 5.78704 5.81255 5.91437 5.93780 5.99460 6.02908 6.10241 6.16005 6.19843 6.26913 6.39887 6.44602 6.60052 6.95522 7.16354 7.31467 7.66069 7.68654 7.77773 7.80370 7.93472 8.20538 8.27251 8.87366 9.49176 9.54798 10.97046 Molecular weight = 313.21amu Principal moments of inertia in cm(-1) A = 0.025824 B = 0.002870 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.002753 B = 9755.092966 C = 9916.038230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.064 3.936 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.062 0.938 9 C 0.249 3.751 10 O -0.596 6.596 11 C -0.118 4.118 12 C 0.033 3.967 13 N -0.486 5.486 14 C 0.009 3.991 15 C 0.121 3.879 16 H 0.093 0.907 17 O -0.526 6.526 18 C -0.141 4.141 19 C 0.143 3.857 20 O -0.536 6.536 21 C -0.146 4.146 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.150 4.150 26 C 0.052 3.948 27 H 0.265 0.735 28 H 0.382 0.618 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.024 0.976 33 H 0.032 0.968 34 H 0.069 0.931 35 H 0.365 0.635 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.364 0.636 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.067 0.933 49 H 0.027 0.973 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.509 -19.269 11.436 22.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.137 4.137 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.209 3.791 10 O -0.405 6.405 11 C -0.157 4.157 12 C -0.095 4.095 13 N -0.210 5.210 14 C -0.120 4.120 15 C 0.061 3.939 16 H 0.111 0.889 17 O -0.329 6.329 18 C -0.179 4.179 19 C 0.102 3.898 20 O -0.342 6.342 21 C -0.184 4.184 22 C -0.160 4.160 23 C -0.160 4.160 24 C -0.161 4.161 25 C -0.187 4.187 26 C -0.076 4.076 27 H 0.075 0.925 28 H 0.232 0.768 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.211 0.789 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.211 0.789 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.096 0.904 48 H 0.086 0.914 49 H 0.045 0.955 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.612 -18.959 11.441 22.618 hybrid contribution -0.149 0.295 -0.232 0.404 sum 4.463 -18.664 11.208 22.223 Atomic orbital electron populations 1.69763 1.05840 1.27194 1.51259 1.25020 0.94998 0.99420 0.94257 0.86499 0.79900 0.82752 0.78203 1.20607 1.21317 1.19777 1.21641 0.94026 0.90460 1.49459 0.91934 1.19244 0.86973 0.91773 0.81145 1.86072 1.60219 1.51478 1.42710 1.22812 0.98233 0.94904 0.99713 1.23165 0.88235 0.98299 0.99827 1.65289 1.19295 1.18188 1.18188 1.23047 1.00549 0.91203 0.97203 1.21746 0.94023 0.86766 0.91413 0.88882 1.86652 1.22079 1.63177 1.61011 1.22353 1.02652 0.98775 0.94112 1.20986 0.89086 0.88045 0.91676 1.86734 1.67925 1.56840 1.22658 1.22244 1.02050 0.97218 0.96886 1.21547 0.96954 1.01488 0.96046 1.21594 0.96441 0.97138 1.00840 1.21548 1.01614 0.96194 0.96706 1.22296 0.97414 1.02837 0.96178 1.23000 1.00442 0.96957 0.87203 0.92549 0.76821 0.90514 0.93250 0.91604 0.95825 0.94974 0.91207 0.78946 0.90291 0.90959 0.78904 0.91329 0.91326 0.91854 0.91816 0.92006 0.91952 0.91764 0.91645 0.90366 0.91434 0.95470 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.72 10.79 55.43 0.60 -24.13 16 2 C 0.06 1.75 5.02 -17.82 -0.09 1.66 16 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.38 8.07 -34.45 -0.28 -14.66 16 8 H 0.06 1.76 7.55 -52.48 -0.40 1.36 16 9 C 0.25 6.39 1.07 -90.39 -0.10 6.30 16 10 O -0.60 -15.91 12.97 -35.23 -0.46 -16.36 16 11 C -0.12 -2.87 5.53 -25.35 -0.14 -3.01 16 12 C 0.03 0.67 5.74 -2.18 -0.01 0.66 16 13 N -0.49 -9.81 5.24 -229.97 -1.20 -11.01 16 14 C 0.01 0.15 4.47 -3.82 -0.02 0.13 16 15 C 0.12 1.67 2.75 -26.73 -0.07 1.60 16 16 H 0.09 1.38 5.27 -51.93 -0.27 1.11 16 17 O -0.53 -8.35 11.48 -56.09 -0.64 -8.99 16 18 C -0.14 -1.50 4.24 -26.73 -0.11 -1.61 16 19 C 0.14 1.38 0.79 -90.62 -0.07 1.31 16 20 O -0.54 -5.98 11.11 -56.09 -0.62 -6.60 16 21 C -0.15 -1.16 4.94 -26.73 -0.13 -1.29 16 22 C -0.12 -0.83 5.67 -26.73 -0.15 -0.98 16 23 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 24 C -0.12 -0.97 5.67 -26.73 -0.15 -1.12 16 25 C -0.15 -1.42 4.61 -26.73 -0.12 -1.55 16 26 C 0.05 1.16 5.76 -2.18 -0.01 1.15 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.38 10.29 7.28 45.56 0.33 10.62 16 29 H 0.08 2.05 7.22 -51.93 -0.38 1.68 16 30 H 0.05 1.20 7.98 -51.93 -0.41 0.79 16 31 H 0.07 1.30 7.76 -51.93 -0.40 0.89 16 32 H 0.02 0.45 7.82 -51.92 -0.41 0.04 16 33 H 0.03 0.49 7.88 -51.93 -0.41 0.08 16 34 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 35 H 0.36 4.96 9.05 45.56 0.41 5.37 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.36 3.17 5.70 45.56 0.26 3.43 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.41 6.78 -51.93 -0.35 0.06 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.50 6.78 -51.93 -0.35 0.15 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.90 6.32 -51.93 -0.33 0.58 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.03 0.59 7.94 -51.93 -0.41 0.18 16 50 H 0.07 1.70 7.68 -51.93 -0.40 1.30 16 LS Contribution 371.44 15.07 5.60 5.60 Total: -1.00 -30.02 371.44 -10.26 -40.27 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -6.88 Total: 17.20 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -1.62 Total: -12.39 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: -0.61 Total: -35.14 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -1.72 Total: -31.95 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.02 -10.26 -40.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878761565.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.763 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds