Wall clock time and date at job start Fri Apr 10 2020 18:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99871 * 2 1 4 4 H 1.08998 * 109.51210 * 309.89500 * 3 2 1 5 5 C 1.52885 * 109.62368 * 189.90795 * 3 2 1 6 6 N 1.47141 * 108.60602 * 187.89878 * 5 3 2 7 7 C 1.34776 * 120.98464 * 230.49921 * 6 5 3 8 8 O 1.21590 * 119.99534 * 4.59760 * 7 6 5 9 9 N 1.34779 * 120.00848 * 184.59814 * 7 6 5 10 10 C 1.46488 * 120.00340 * 175.03203 * 9 7 6 11 11 C 1.53045 * 109.45935 * 204.99784 * 10 9 7 12 12 C 1.53190 * 109.31386 * 178.60939 * 11 10 9 13 13 N 1.46930 * 108.77230 * 54.63748 * 12 11 10 14 14 C 1.36936 * 120.62933 * 126.36560 * 13 12 11 15 15 H 1.08006 * 120.00230 * 327.83136 * 14 13 12 16 16 C 1.38817 * 120.00177 * 147.82733 * 14 13 12 17 17 N 1.31621 * 119.99397 * 336.28108 * 16 14 13 18 18 Si 1.86793 * 120.00013 * 156.00058 * 16 14 13 19 19 H 1.48498 * 109.47430 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47184 * 120.00530 * 18 16 14 21 21 H 1.48501 * 109.47135 * 239.99872 * 18 16 14 22 22 C 1.46924 * 118.74158 * 306.64203 * 13 12 11 23 23 C 1.52767 * 109.00627 * 53.30655 * 22 13 12 24 24 C 1.47158 * 118.04022 * 50.22597 * 6 5 3 25 25 C 1.53296 * 108.37904 * 309.71909 * 24 6 5 26 26 O 1.42953 * 109.50938 * 70.00069 * 3 2 1 27 27 H 1.09000 * 109.46614 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47298 * 299.99800 * 1 2 3 29 29 H 1.08999 * 109.46985 * 59.99964 * 1 2 3 30 30 H 1.08995 * 109.61777 * 68.07398 * 5 3 2 31 31 H 1.09001 * 109.52153 * 307.66280 * 5 3 2 32 32 H 0.97001 * 119.99065 * 355.03202 * 9 7 6 33 33 H 1.09004 * 109.46024 * 324.96761 * 10 9 7 34 34 H 1.09004 * 109.49694 * 58.66619 * 11 10 9 35 35 H 1.08994 * 109.49931 * 298.56585 * 11 10 9 36 36 H 1.09003 * 109.59249 * 294.85080 * 12 11 10 37 37 H 1.08999 * 109.70374 * 174.49437 * 12 11 10 38 38 H 0.96994 * 120.00693 * 353.92793 * 17 16 14 39 39 H 1.08997 * 109.58946 * 173.14311 * 22 13 12 40 40 H 1.08999 * 109.58371 * 293.57444 * 22 13 12 41 41 H 1.08997 * 109.56045 * 185.55612 * 23 22 13 42 42 H 1.08997 * 109.35384 * 65.50089 * 23 22 13 43 43 H 1.08998 * 109.68030 * 69.43441 * 24 6 5 44 44 H 1.08994 * 109.68625 * 189.95809 * 24 6 5 45 45 H 1.09001 * 109.50928 * 172.22840 * 25 24 6 46 46 H 1.08999 * 109.51033 * 292.37014 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.5563 1.9061 -0.7882 5 6 3.5150 1.1976 -0.2478 6 7 4.1189 2.5255 -0.0553 7 6 4.9365 3.0574 -0.9854 8 8 5.1187 2.4768 -2.0380 9 7 5.5521 4.2328 -0.7489 10 6 6.5238 4.7575 -1.7114 11 6 7.4987 5.6933 -0.9930 12 6 8.5341 6.2128 -1.9954 13 7 7.8286 6.8296 -3.1271 14 6 8.1199 8.1095 -3.5169 15 1 8.4289 8.8402 -2.7840 16 6 8.0183 8.4680 -4.8541 17 7 8.1074 7.5476 -5.7907 18 14 7.7472 10.2555 -5.3239 19 1 7.6770 11.0853 -4.0944 20 1 8.8744 10.7211 -6.1711 21 1 6.4752 10.3812 -6.0798 22 6 6.8003 6.0492 -3.8287 23 6 5.7883 5.5295 -2.8091 24 6 3.7990 3.2585 1.1801 25 6 2.2762 3.2681 1.3558 26 8 1.7834 1.9291 1.2662 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.6945 0.8570 -1.2675 31 1 3.9506 0.4904 0.4581 32 1 5.3517 4.7312 0.0588 33 1 7.0763 3.9303 -2.1572 34 1 8.0053 5.1488 -0.1961 35 1 6.9500 6.5338 -0.5682 36 1 9.1443 5.3836 -2.3534 37 1 9.1716 6.9544 -1.5142 38 1 8.3315 6.6342 -5.5534 39 1 6.2923 6.6835 -4.5550 40 1 7.2662 5.2063 -4.3391 41 1 5.0774 4.8684 -3.3049 42 1 5.2557 6.3716 -2.3673 43 1 4.2636 2.7623 2.0321 44 1 4.1670 4.2817 1.1056 45 1 2.0249 3.6841 2.3314 46 1 1.8232 3.8759 0.5725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892879093.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:12 Heat of formation + Delta-G solvation = -110.576866 kcal Electronic energy + Delta-G solvation = -27236.580721 eV Core-core repulsion = 23354.472817 eV Total energy + Delta-G solvation = -3882.107904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.83661 -40.35528 -39.21516 -38.00477 -36.29326 -35.91645 -34.00612 -32.13604 -31.83619 -31.02301 -29.03601 -27.37643 -26.49705 -25.00183 -24.17975 -23.87763 -22.94986 -21.30771 -20.79173 -19.68801 -19.18122 -18.39613 -17.84038 -17.59642 -17.12056 -16.45938 -16.39783 -16.04692 -15.78970 -15.47592 -15.34920 -15.31342 -15.17235 -15.03205 -14.75474 -14.48270 -14.27221 -13.96606 -13.49896 -13.29782 -12.98516 -12.82646 -12.60047 -12.45428 -12.34252 -12.14769 -12.08843 -11.91850 -11.81448 -11.68312 -11.56923 -11.31143 -11.18108 -11.02947 -10.49509 -10.25734 -9.64081 -8.94850 -8.23654 -5.46610 1.26264 1.59137 1.67322 1.82928 1.94433 2.17110 2.65727 2.70607 2.99101 3.21993 3.52097 3.60114 3.63898 3.75084 3.88329 3.95005 4.05580 4.13807 4.21691 4.31612 4.34090 4.42509 4.50229 4.50823 4.57820 4.62174 4.65509 4.73229 4.78919 4.81140 4.89849 4.97719 5.01066 5.13277 5.14860 5.18872 5.38458 5.45879 5.73036 5.78260 5.88327 6.04142 6.38073 6.81296 7.05306 7.40436 7.75367 8.22743 8.99168 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.026298 B = 0.002700 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.464076 B =10366.673667 C =10532.934048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.384 6.384 3 C 0.250 3.750 4 H 0.057 0.943 5 C 0.114 3.886 6 N -0.629 5.629 7 C 0.706 3.294 8 O -0.630 6.630 9 N -0.720 5.720 10 C 0.182 3.818 11 C -0.119 4.119 12 C 0.142 3.858 13 N -0.616 5.616 14 C -0.354 4.354 15 H 0.056 0.944 16 C -0.078 4.078 17 N -0.944 5.944 18 Si 1.120 2.880 19 H -0.268 1.268 20 H -0.292 1.292 21 H -0.290 1.290 22 C 0.165 3.835 23 C -0.126 4.126 24 C 0.069 3.931 25 C 0.057 3.943 26 O -0.412 6.412 27 H 0.108 0.892 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.410 0.590 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.012 0.988 37 H 0.065 0.935 38 H 0.252 0.748 39 H 0.041 0.959 40 H -0.005 1.005 41 H 0.048 0.952 42 H 0.064 0.936 43 H 0.098 0.902 44 H 0.112 0.888 45 H 0.145 0.855 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.525 -9.637 20.159 26.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.302 6.302 3 C 0.153 3.847 4 H 0.074 0.926 5 C -0.010 4.010 6 N -0.368 5.368 7 C 0.407 3.593 8 O -0.510 6.510 9 N -0.377 5.377 10 C 0.076 3.924 11 C -0.159 4.159 12 C 0.017 3.983 13 N -0.340 5.340 14 C -0.483 4.483 15 H 0.074 0.926 16 C -0.274 4.274 17 N -0.586 5.586 18 Si 0.945 3.055 19 H -0.192 1.192 20 H -0.219 1.219 21 H -0.216 1.216 22 C 0.039 3.961 23 C -0.166 4.166 24 C -0.053 4.053 25 C -0.020 4.020 26 O -0.333 6.333 27 H 0.126 0.874 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.249 0.751 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.030 0.970 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.013 0.987 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.116 0.884 44 H 0.130 0.870 45 H 0.162 0.838 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.613 -9.283 18.320 25.206 hybrid contribution 0.321 -0.795 0.732 1.127 sum -14.292 -10.077 19.052 25.861 Atomic orbital electron populations 1.22997 0.78241 1.04519 1.01149 1.87945 1.22812 1.25391 1.94101 1.23026 0.92508 0.83333 0.85816 0.92594 1.21585 0.91327 0.83905 1.04224 1.47214 1.49601 1.19427 1.20603 1.15967 0.79119 0.81354 0.82832 1.90921 1.68726 1.64357 1.27011 1.45195 1.45087 1.21253 1.26182 1.20511 0.88343 0.94959 0.88572 1.22117 0.96988 0.98591 0.98176 1.21049 0.93290 0.95671 0.88324 1.44368 1.40126 1.13309 1.36244 1.20245 1.47321 0.87302 0.93456 0.92648 1.27359 0.98573 1.09058 0.92420 1.70838 1.48600 1.04009 1.35127 0.82803 0.76456 0.70635 0.75641 1.19227 1.21885 1.21643 1.20552 0.89310 0.92744 0.93508 1.22151 0.98050 0.98931 0.97486 1.22713 0.97546 0.98656 0.86362 1.23193 0.91865 0.81628 1.05284 1.87814 1.80765 1.29542 1.35221 0.87369 0.92685 0.93143 0.89239 0.89351 0.75081 0.92525 0.88810 0.90471 0.97035 0.91630 0.93787 0.94084 0.98672 0.93356 0.91700 0.88430 0.87012 0.83766 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.88 113.37 1.23 1.60 16 2 O -0.38 -7.95 10.62 -126.22 -1.34 -9.29 16 3 C 0.25 5.02 3.28 71.94 0.24 5.26 16 4 H 0.06 1.15 8.09 -2.39 -0.02 1.13 16 5 C 0.11 2.54 6.28 86.22 0.54 3.08 16 6 N -0.63 -13.56 3.03 -836.16 -2.53 -16.09 16 7 C 0.71 20.72 8.27 179.05 1.48 22.20 16 8 O -0.63 -24.97 15.47 -4.00 -0.06 -25.03 16 9 N -0.72 -18.28 4.99 -457.70 -2.28 -20.56 16 10 C 0.18 5.99 2.38 45.02 0.11 6.09 16 11 C -0.12 -3.54 5.55 30.67 0.17 -3.37 16 12 C 0.14 5.69 6.52 86.36 0.56 6.25 16 13 N -0.62 -30.80 2.79 -699.91 -1.95 -32.75 16 14 C -0.35 -19.56 9.44 84.03 0.79 -18.77 16 15 H 0.06 3.01 7.94 -2.91 -0.02 2.99 16 16 C -0.08 -4.44 4.69 84.86 0.40 -4.05 16 17 N -0.94 -58.94 12.58 21.65 0.27 -58.67 16 18 Si 1.12 50.92 29.98 68.60 2.06 52.98 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 21 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 22 C 0.17 8.18 4.72 86.22 0.41 8.58 16 23 C -0.13 -4.94 5.63 30.53 0.17 -4.77 16 24 C 0.07 0.84 6.58 86.35 0.57 1.41 16 25 C 0.06 0.63 6.98 72.08 0.50 1.14 16 26 O -0.41 -7.28 10.23 -126.22 -1.29 -8.57 16 27 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.05 0.73 7.89 -2.39 -0.02 0.71 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.09 2.41 7.06 -2.39 -0.02 2.40 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.41 7.15 6.15 -92.71 -0.57 6.58 16 33 H 0.06 2.20 7.65 -2.38 -0.02 2.18 16 34 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.07 2.54 7.93 -2.39 -0.02 2.52 16 38 H 0.25 16.24 6.84 -92.71 -0.63 15.60 16 39 H 0.04 2.28 6.62 -2.39 -0.02 2.27 16 40 H 0.00 -0.25 7.86 -2.39 -0.02 -0.27 16 41 H 0.05 1.97 8.09 -2.39 -0.02 1.96 16 42 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.11 0.90 5.77 -2.39 -0.01 0.88 16 45 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -77.07 361.51 0.58 -76.49 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.54 Total: 16.84 kcal Atomic # 6 Polarization: 17.48 SS G_CDS: 7.17 Total: 24.65 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -6.49 Total: -128.07 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -2.69 Total: -42.89 kcal Atomic # 14 Polarization: 50.92 SS G_CDS: 2.06 Total: 52.98 kcal Total: -77.07 0.58 -76.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892879093.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.091 kcal (2) G-P(sol) polarization free energy of solvation -77.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds