Wall clock time and date at job start Fri Apr 10 2020 18:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99918 * 2 1 4 4 C 1.53007 * 109.46862 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47233 * 65.00029 * 4 3 2 6 6 C 1.46502 * 119.99779 * 269.99549 * 5 4 3 7 7 C 1.50692 * 109.47238 * 270.00414 * 6 5 4 8 8 H 1.08001 * 120.00066 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00291 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99881 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00407 * 179.97438 * 9 7 6 12 12 H 1.48491 * 109.47084 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46957 * 120.00108 * 11 9 7 14 14 H 1.48494 * 109.47197 * 239.99798 * 11 9 7 15 15 C 1.34774 * 120.00209 * 90.00213 * 5 4 3 16 16 O 1.21289 * 119.99735 * 359.97438 * 15 5 4 17 17 C 1.50693 * 119.99942 * 180.02562 * 15 5 4 18 18 N 1.46509 * 109.47014 * 179.97438 * 17 15 5 19 19 C 1.34779 * 119.99795 * 180.02562 * 18 17 15 20 20 O 1.21578 * 120.00186 * 359.97438 * 19 18 17 21 21 N 1.34780 * 119.99572 * 179.97438 * 19 18 17 22 22 C 1.47024 * 125.64847 * 359.68614 * 21 19 18 23 23 C 1.54327 * 107.26851 * 181.32598 * 22 21 19 24 24 C 1.55154 * 102.94372 * 22.19158 * 23 22 21 25 25 C 1.47426 * 125.64645 * 179.97438 * 21 19 18 26 26 H 1.08992 * 109.47419 * 300.00130 * 1 2 3 27 27 H 1.09001 * 109.46974 * 60.00410 * 1 2 3 28 28 H 1.09002 * 109.46883 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47156 * 59.99837 * 3 2 1 30 30 H 1.09003 * 109.47000 * 299.99350 * 3 2 1 31 31 H 1.08997 * 109.46927 * 304.99803 * 4 3 2 32 32 H 1.09005 * 109.46486 * 184.99805 * 4 3 2 33 33 H 1.08995 * 109.46931 * 30.00394 * 6 5 4 34 34 H 1.08999 * 109.47020 * 149.99995 * 6 5 4 35 35 H 0.96991 * 120.00534 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.47855 * 59.99748 * 17 15 5 37 37 H 1.08995 * 109.46982 * 299.99024 * 17 15 5 38 38 H 0.97004 * 119.99661 * 359.97438 * 18 17 15 39 39 H 1.08997 * 109.88062 * 300.74548 * 22 21 19 40 40 H 1.09000 * 109.88248 * 61.90735 * 22 21 19 41 41 H 1.09005 * 110.71834 * 263.82776 * 23 22 21 42 42 H 1.08999 * 110.71553 * 140.55738 * 23 22 21 43 43 H 1.09000 * 111.00849 * 206.42090 * 24 23 22 44 44 H 1.09001 * 111.00585 * 82.56882 * 24 23 22 45 45 H 1.09004 * 110.36499 * 274.44757 * 25 21 19 46 46 H 1.08998 * 110.36482 * 36.65820 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1053 -0.8922 -1.3427 7 6 5.5010 -1.2978 -0.9448 8 1 6.2198 -0.5459 -0.6544 9 6 5.8607 -2.6288 -0.9525 10 7 4.9855 -3.5445 -1.3066 11 14 7.5909 -3.1317 -0.4599 12 1 8.3763 -1.9220 -0.1067 13 1 7.5274 -4.0401 0.7132 14 1 8.2444 -3.8329 -1.5941 15 6 4.2616 1.3336 -2.3218 16 8 4.1540 2.5394 -2.2474 17 6 4.7139 0.6955 -3.6099 18 7 4.9588 1.7368 -4.6110 19 6 5.3736 1.3982 -5.8479 20 8 5.5448 0.2287 -6.1327 21 7 5.5984 2.3561 -6.7690 22 6 5.4257 3.8014 -6.5619 23 6 5.7661 4.4992 -7.8956 24 6 5.5648 3.3696 -8.9401 25 6 6.0526 2.1277 -8.1528 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8901 31 1 3.8514 0.5682 0.8409 32 1 3.9785 2.1765 0.0889 33 1 3.3853 -1.3630 -0.6734 34 1 3.9121 -1.2115 -2.3668 35 1 5.2386 -4.4808 -1.3124 36 1 3.9396 0.0190 -3.9718 37 1 5.6327 0.1359 -3.4350 38 1 4.8218 2.6698 -4.3838 39 1 4.3936 4.0153 -6.2843 40 1 6.1014 4.1471 -5.7796 41 1 6.7996 4.8457 -7.8968 42 1 5.0809 5.3256 -8.0843 43 1 6.1812 3.5393 -9.8229 44 1 4.5138 3.2719 -9.2123 45 1 7.1398 2.0584 -8.1887 46 1 5.6019 1.2204 -8.5551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900562001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:21 Heat of formation + Delta-G solvation = -104.372248 kcal Electronic energy + Delta-G solvation = -26947.260691 eV Core-core repulsion = 23065.421839 eV Total energy + Delta-G solvation = -3881.838852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.16296 -39.22884 -37.57741 -37.22928 -35.05257 -34.03659 -32.58213 -31.62784 -30.13423 -29.12246 -27.27429 -26.88985 -25.72065 -23.49980 -22.88613 -22.21612 -21.31076 -19.75591 -18.91464 -17.87332 -16.65472 -16.61096 -16.45387 -16.07432 -15.71705 -15.34428 -15.08011 -15.04507 -14.63369 -14.33761 -14.11569 -13.78264 -13.68303 -13.18522 -13.01075 -12.66115 -12.51207 -12.36161 -12.06687 -11.91943 -11.60317 -11.55127 -11.52904 -11.40872 -11.37906 -10.97047 -10.90225 -10.85691 -10.55561 -10.11379 -9.94260 -9.68906 -9.44620 -9.19603 -8.87373 -8.47878 -8.39957 -7.78235 -6.09670 -4.17178 2.69429 3.20242 3.29049 3.37574 3.40873 3.45768 3.77876 4.12746 4.21304 4.39741 4.41963 4.54332 4.70088 5.09502 5.19830 5.20559 5.25351 5.36336 5.45287 5.47800 5.49970 5.62492 5.62960 5.63250 5.66090 5.71107 5.79237 5.84891 5.94981 5.97556 6.02030 6.20104 6.29538 6.33746 6.70803 6.79377 7.20282 7.32376 7.45943 7.55476 7.84647 8.12620 8.18633 8.27212 8.73873 8.85600 8.93815 9.50128 10.97385 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.010358 B = 0.004079 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.459015 B = 6863.422792 C = 8749.758467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.048 3.952 4 C 0.122 3.878 5 N -0.579 5.579 6 C 0.235 3.765 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.067 3.933 10 N -0.886 5.886 11 Si 0.895 3.105 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.512 3.488 16 O -0.582 6.582 17 C 0.124 3.876 18 N -0.730 5.730 19 C 0.722 3.278 20 O -0.584 6.584 21 N -0.641 5.641 22 C 0.098 3.902 23 C -0.129 4.129 24 C -0.134 4.134 25 C 0.125 3.875 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.037 0.963 35 H 0.264 0.736 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.402 0.598 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.911 14.675 -7.938 17.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.030 4.030 4 C -0.002 4.002 5 N -0.308 5.308 6 C 0.116 3.884 7 C -0.581 4.581 8 H 0.079 0.921 9 C -0.136 4.136 10 N -0.524 5.524 11 Si 0.723 3.277 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.300 3.700 16 O -0.465 6.465 17 C -0.003 4.003 18 N -0.388 5.388 19 C 0.423 3.577 20 O -0.462 6.462 21 N -0.381 5.381 22 C -0.026 4.026 23 C -0.167 4.167 24 C -0.172 4.172 25 C 0.002 3.998 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.128 0.872 38 H 0.239 0.761 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.780 13.928 -8.005 16.503 hybrid contribution 0.609 0.198 0.502 0.814 sum -3.171 14.126 -7.504 16.307 Atomic orbital electron populations 1.22683 0.82116 1.02464 0.99135 1.88065 1.18702 1.27346 1.95196 1.23013 0.95189 0.85006 0.99771 1.21370 0.91126 0.99643 0.88042 1.48115 1.62633 1.10218 1.09801 1.19591 0.97638 0.72209 0.98976 1.21507 0.97177 0.92517 1.46923 0.92138 1.24916 0.97490 0.96360 0.94837 1.69935 1.34283 1.01185 1.47004 0.86481 0.84353 0.78636 0.78236 1.19751 1.20906 1.20780 1.20344 0.77179 0.86671 0.85854 1.90554 1.56756 1.14636 1.84593 1.20974 1.04265 0.89488 0.85543 1.44848 1.72406 1.11120 1.10433 1.15334 0.78415 0.83932 0.79987 1.90961 1.59303 1.16318 1.79584 1.47532 1.72317 1.05591 1.12643 1.21993 1.01284 0.80882 0.98415 1.22600 1.02517 0.97867 0.93726 1.22806 1.02253 0.94408 0.97766 1.22039 0.99076 0.98640 0.80092 0.94714 0.94670 0.89807 0.93150 0.93425 0.89202 0.89383 0.92859 0.94496 0.92589 0.88773 0.87173 0.76073 0.91624 0.91537 0.90515 0.90070 0.89817 0.90596 0.91784 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.61 9.53 -35.23 -0.34 -6.94 16 3 C 0.05 0.76 6.28 37.16 0.23 1.00 16 4 C 0.12 2.19 5.81 -4.04 -0.02 2.17 16 5 N -0.58 -12.11 2.42 -175.06 -0.42 -12.53 16 6 C 0.24 5.71 4.78 -5.20 -0.02 5.69 16 7 C -0.54 -14.41 9.28 -34.44 -0.32 -14.72 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 10 N -0.89 -25.27 13.29 55.43 0.74 -24.54 16 11 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 C 0.51 10.46 7.74 -10.99 -0.09 10.38 16 16 O -0.58 -12.02 15.25 5.55 0.08 -11.94 16 17 C 0.12 2.49 4.71 -5.19 -0.02 2.47 16 18 N -0.73 -12.97 5.49 -66.41 -0.36 -13.33 16 19 C 0.72 13.19 8.49 -86.91 -0.74 12.45 16 20 O -0.58 -13.05 16.59 5.30 0.09 -12.96 16 21 N -0.64 -8.92 3.33 -176.22 -0.59 -9.50 16 22 C 0.10 1.00 6.15 -3.06 -0.02 0.98 16 23 C -0.13 -0.93 6.95 -24.90 -0.17 -1.10 16 24 C -0.13 -1.02 7.09 -24.57 -0.17 -1.19 16 25 C 0.12 1.41 6.91 -2.52 -0.02 1.40 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.64 8.07 -51.93 -0.42 1.22 16 32 H 0.09 1.49 7.42 -51.93 -0.39 1.11 16 33 H 0.05 1.39 7.11 -51.93 -0.37 1.02 16 34 H 0.04 0.95 6.44 -51.93 -0.33 0.61 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.09 1.94 7.40 -51.93 -0.38 1.55 16 37 H 0.11 2.45 8.00 -51.93 -0.42 2.03 16 38 H 0.40 6.55 6.42 -40.82 -0.26 6.29 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.08 0.98 8.03 -51.93 -0.42 0.56 16 LS Contribution 380.13 15.07 5.73 5.73 Total: -1.00 -32.83 380.13 -8.05 -40.88 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -7.61 Total: 6.09 kcal Atomic # 6 Polarization: 23.15 SS G_CDS: -0.35 Total: 22.80 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.64 Total: -59.90 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.16 Total: -31.84 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.83 -8.05 -40.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900562001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.494 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds