Wall clock time and date at job start Fri Apr 10 2020 18:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99918 * 2 1 4 4 C 1.53007 * 109.46862 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47233 * 65.00029 * 4 3 2 6 6 C 1.46502 * 119.99779 * 269.99549 * 5 4 3 7 7 C 1.50692 * 109.47238 * 270.00414 * 6 5 4 8 8 H 1.08001 * 120.00066 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00291 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99881 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00407 * 179.97438 * 9 7 6 12 12 H 1.48491 * 109.47084 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46957 * 120.00108 * 11 9 7 14 14 H 1.48494 * 109.47197 * 239.99798 * 11 9 7 15 15 C 1.34774 * 120.00209 * 90.00213 * 5 4 3 16 16 O 1.21289 * 119.99735 * 359.97438 * 15 5 4 17 17 C 1.50693 * 119.99942 * 180.02562 * 15 5 4 18 18 N 1.46509 * 109.47014 * 179.97438 * 17 15 5 19 19 C 1.34779 * 119.99795 * 180.02562 * 18 17 15 20 20 O 1.21578 * 120.00186 * 359.97438 * 19 18 17 21 21 N 1.34780 * 119.99572 * 179.97438 * 19 18 17 22 22 C 1.47024 * 125.64847 * 359.68614 * 21 19 18 23 23 C 1.54327 * 107.26851 * 181.32598 * 22 21 19 24 24 C 1.55154 * 102.94372 * 22.19158 * 23 22 21 25 25 C 1.47426 * 125.64645 * 179.97438 * 21 19 18 26 26 H 1.08992 * 109.47419 * 300.00130 * 1 2 3 27 27 H 1.09001 * 109.46974 * 60.00410 * 1 2 3 28 28 H 1.09002 * 109.46883 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47156 * 59.99837 * 3 2 1 30 30 H 1.09003 * 109.47000 * 299.99350 * 3 2 1 31 31 H 1.08997 * 109.46927 * 304.99803 * 4 3 2 32 32 H 1.09005 * 109.46486 * 184.99805 * 4 3 2 33 33 H 1.08995 * 109.46931 * 30.00394 * 6 5 4 34 34 H 1.08999 * 109.47020 * 149.99995 * 6 5 4 35 35 H 0.96991 * 120.00534 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.47855 * 59.99748 * 17 15 5 37 37 H 1.08995 * 109.46982 * 299.99024 * 17 15 5 38 38 H 0.97004 * 119.99661 * 359.97438 * 18 17 15 39 39 H 1.08997 * 109.88062 * 300.74548 * 22 21 19 40 40 H 1.09000 * 109.88248 * 61.90735 * 22 21 19 41 41 H 1.09005 * 110.71834 * 263.82776 * 23 22 21 42 42 H 1.08999 * 110.71553 * 140.55738 * 23 22 21 43 43 H 1.09000 * 111.00849 * 206.42090 * 24 23 22 44 44 H 1.09001 * 111.00585 * 82.56882 * 24 23 22 45 45 H 1.09004 * 110.36499 * 274.44757 * 25 21 19 46 46 H 1.08998 * 110.36482 * 36.65820 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1053 -0.8922 -1.3427 7 6 5.5010 -1.2978 -0.9448 8 1 6.2198 -0.5459 -0.6544 9 6 5.8607 -2.6288 -0.9525 10 7 4.9855 -3.5445 -1.3066 11 14 7.5909 -3.1317 -0.4599 12 1 8.3763 -1.9220 -0.1067 13 1 7.5274 -4.0401 0.7132 14 1 8.2444 -3.8329 -1.5941 15 6 4.2616 1.3336 -2.3218 16 8 4.1540 2.5394 -2.2474 17 6 4.7139 0.6955 -3.6099 18 7 4.9588 1.7368 -4.6110 19 6 5.3736 1.3982 -5.8479 20 8 5.5448 0.2287 -6.1327 21 7 5.5984 2.3561 -6.7690 22 6 5.4257 3.8014 -6.5619 23 6 5.7661 4.4992 -7.8956 24 6 5.5648 3.3696 -8.9401 25 6 6.0526 2.1277 -8.1528 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8901 31 1 3.8514 0.5682 0.8409 32 1 3.9785 2.1765 0.0889 33 1 3.3853 -1.3630 -0.6734 34 1 3.9121 -1.2115 -2.3668 35 1 5.2386 -4.4808 -1.3124 36 1 3.9396 0.0190 -3.9718 37 1 5.6327 0.1359 -3.4350 38 1 4.8218 2.6698 -4.3838 39 1 4.3936 4.0153 -6.2843 40 1 6.1014 4.1471 -5.7796 41 1 6.7996 4.8457 -7.8968 42 1 5.0809 5.3256 -8.0843 43 1 6.1812 3.5393 -9.8229 44 1 4.5138 3.2719 -9.2123 45 1 7.1398 2.0584 -8.1887 46 1 5.6019 1.2204 -8.5551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900562001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:19 Heat of formation + Delta-G solvation = -127.270552 kcal Electronic energy + Delta-G solvation = -26948.253636 eV Core-core repulsion = 23065.421839 eV Total energy + Delta-G solvation = -3882.831797 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.56025 -40.73702 -38.80532 -38.43077 -36.76669 -35.61581 -34.58271 -32.70178 -31.56570 -29.99029 -29.11397 -28.32206 -26.97925 -24.90848 -24.56875 -23.56208 -22.03147 -21.14913 -20.36921 -19.28473 -18.62120 -17.99486 -17.71592 -17.42227 -17.14579 -16.91383 -16.50971 -16.38382 -16.24665 -15.84846 -15.46962 -15.13318 -14.53656 -14.42180 -14.25297 -14.16047 -13.87859 -13.73074 -13.61666 -13.34585 -13.21620 -13.01291 -12.78161 -12.73577 -12.62239 -12.20161 -12.14454 -12.13194 -11.93095 -11.67237 -11.57702 -11.46961 -10.99791 -10.62904 -10.51907 -10.39579 -9.58980 -9.52356 -8.19358 -6.33951 1.38208 1.39910 1.42489 1.50935 1.54697 2.01515 2.23030 2.42721 2.94459 2.98077 3.12022 3.53717 3.69005 3.72732 4.08436 4.13750 4.22910 4.29167 4.30998 4.39443 4.48595 4.49657 4.53162 4.56141 4.61322 4.64407 4.85245 4.87293 4.89575 4.93517 4.98048 5.00383 5.12684 5.17686 5.27142 5.32806 5.38388 5.62635 5.79412 5.96330 6.05582 6.28341 6.48252 6.78181 6.85902 7.11309 7.37818 7.43558 8.87071 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.010358 B = 0.004079 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.459015 B = 6863.422792 C = 8749.758467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.055 3.945 4 C 0.116 3.884 5 N -0.582 5.582 6 C 0.257 3.743 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.020 3.980 10 N -0.919 5.919 11 Si 0.957 3.043 12 H -0.268 1.268 13 H -0.274 1.274 14 H -0.283 1.283 15 C 0.516 3.484 16 O -0.579 6.579 17 C 0.134 3.866 18 N -0.722 5.722 19 C 0.714 3.286 20 O -0.634 6.634 21 N -0.638 5.638 22 C 0.087 3.913 23 C -0.118 4.118 24 C -0.121 4.121 25 C 0.112 3.888 26 H 0.059 0.941 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.035 0.965 34 H 0.018 0.982 35 H 0.267 0.733 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.411 0.589 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.704 17.126 -8.170 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C -0.023 4.023 4 C -0.007 4.007 5 N -0.311 5.311 6 C 0.136 3.864 7 C -0.588 4.588 8 H 0.075 0.925 9 C -0.181 4.181 10 N -0.558 5.558 11 Si 0.782 3.218 12 H -0.192 1.192 13 H -0.200 1.200 14 H -0.209 1.209 15 C 0.304 3.696 16 O -0.462 6.462 17 C 0.006 3.994 18 N -0.380 5.380 19 C 0.416 3.584 20 O -0.516 6.516 21 N -0.376 5.376 22 C -0.035 4.035 23 C -0.156 4.156 24 C -0.159 4.159 25 C -0.010 4.010 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.053 0.947 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.250 0.750 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.583 16.469 -8.246 18.763 hybrid contribution 0.505 -0.505 0.549 0.901 sum -3.078 15.963 -7.697 17.987 Atomic orbital electron populations 1.22865 0.79997 1.03291 1.00660 1.88012 1.21167 1.28410 1.95496 1.22957 0.93402 0.84764 1.01157 1.21602 0.93053 0.99740 0.86291 1.48044 1.62938 1.08953 1.11126 1.19093 0.96124 0.74120 0.97095 1.21740 0.97986 0.92602 1.46465 0.92539 1.25682 1.01068 0.96468 0.94870 1.70035 1.36113 1.01526 1.48098 0.85524 0.79946 0.78375 0.77948 1.19189 1.19962 1.20890 1.20258 0.77064 0.86614 0.85709 1.90542 1.56800 1.14293 1.84601 1.20662 1.02573 0.89923 0.86200 1.44656 1.72443 1.10883 1.10047 1.15570 0.78323 0.84083 0.80459 1.90915 1.61443 1.18737 1.80480 1.47669 1.70675 1.06616 1.12679 1.22325 1.01818 0.78643 1.00751 1.22628 1.03982 0.97828 0.91134 1.22793 1.02775 0.92162 0.98167 1.22331 0.99363 1.00105 0.79236 0.92232 0.93983 0.89477 0.89645 0.93907 0.89805 0.88076 0.94707 0.96448 0.92421 0.89919 0.89727 0.75024 0.91128 0.91257 0.89219 0.87630 0.87104 0.90385 0.91337 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.95 16 2 O -0.41 -14.32 9.53 -148.98 -1.42 -15.74 16 3 C 0.05 1.66 6.28 71.98 0.45 2.12 16 4 C 0.12 4.09 5.81 86.38 0.50 4.59 16 5 N -0.58 -24.68 2.42 -826.16 -2.00 -26.68 16 6 C 0.26 12.90 4.78 85.63 0.41 13.31 16 7 C -0.55 -29.79 9.28 25.60 0.24 -29.55 16 8 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 9 C 0.02 1.08 5.46 84.65 0.46 1.55 16 10 N -0.92 -53.56 13.29 21.45 0.28 -53.28 16 11 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 14 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 15 C 0.52 21.31 7.74 87.66 0.68 21.98 16 16 O -0.58 -23.43 15.25 -3.06 -0.05 -23.48 16 17 C 0.13 5.62 4.71 85.63 0.40 6.03 16 18 N -0.72 -26.16 5.49 -482.30 -2.65 -28.81 16 19 C 0.71 26.84 8.49 179.05 1.52 28.36 16 20 O -0.63 -29.74 16.59 -3.96 -0.07 -29.81 16 21 N -0.64 -17.54 3.33 -829.71 -2.76 -20.30 16 22 C 0.09 1.60 6.15 86.73 0.53 2.14 16 23 C -0.12 -1.28 6.95 31.78 0.22 -1.06 16 24 C -0.12 -1.49 7.09 31.99 0.23 -1.27 16 25 C 0.11 2.47 6.91 86.86 0.60 3.07 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.09 2.09 8.14 -2.39 -0.02 2.08 16 29 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 3.05 8.07 -2.39 -0.02 3.03 16 32 H 0.10 3.28 7.42 -2.38 -0.02 3.26 16 33 H 0.03 1.88 7.11 -2.39 -0.02 1.87 16 34 H 0.02 0.94 6.44 -2.39 -0.02 0.93 16 35 H 0.27 14.71 8.31 -92.72 -0.77 13.94 16 36 H 0.08 3.63 7.40 -2.39 -0.02 3.61 16 37 H 0.08 3.98 8.00 -2.39 -0.02 3.96 16 38 H 0.41 13.27 6.42 -92.71 -0.60 12.68 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.06 1.52 8.03 -2.39 -0.02 1.51 16 Total: -1.00 -72.64 380.13 1.24 -71.40 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.37 Total: 27.46 kcal Atomic # 6 Polarization: 45.70 SS G_CDS: 7.49 Total: 53.20 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -7.12 Total: -129.06 kcal Atomic # 8 Polarization: -67.50 SS G_CDS: -1.53 Total: -69.03 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -72.64 1.24 -71.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900562001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.872 kcal (2) G-P(sol) polarization free energy of solvation -72.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds