Wall clock time and date at job start Fri Apr 10 2020 18:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47294 * 2 1 4 4 C 1.45748 * 117.94750 * 269.97992 * 3 2 1 5 5 C 1.52921 * 110.48513 * 199.09668 * 4 3 2 6 6 C 1.53329 * 108.68901 * 309.25592 * 5 4 3 7 7 C 1.53076 * 108.42446 * 67.51880 * 6 5 4 8 8 H 1.09005 * 109.32965 * 71.18541 * 7 6 5 9 9 N 1.46893 * 109.40279 * 190.96664 * 7 6 5 10 10 C 1.46899 * 111.00167 * 205.42830 * 9 7 6 11 11 C 1.53003 * 109.46954 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.47166 * 304.99913 * 11 10 9 13 13 O 1.42896 * 109.46971 * 65.00557 * 11 10 9 14 14 C 1.53003 * 109.46872 * 185.00574 * 11 10 9 15 15 N 1.46900 * 109.46868 * 178.46800 * 14 11 10 16 16 C 1.46906 * 110.99736 * 164.06917 * 15 14 11 17 17 C 1.46900 * 110.99907 * 288.01287 * 15 14 11 18 18 C 1.50694 * 109.47223 * 170.00205 * 17 15 14 19 19 H 1.08007 * 120.00040 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00389 * 180.02562 * 18 17 15 21 21 N 1.31508 * 120.00059 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99555 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47113 * 90.00957 * 22 20 18 24 24 H 1.48507 * 109.47173 * 210.00373 * 22 20 18 25 25 H 1.48500 * 109.47515 * 330.00740 * 22 20 18 26 26 C 1.33358 * 117.94359 * 89.99793 * 3 2 1 27 27 O 1.21280 * 118.24819 * 357.75686 * 26 3 2 28 28 H 1.08997 * 109.47624 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47379 * 300.00205 * 1 2 3 30 30 H 1.09000 * 109.46976 * 60.00124 * 1 2 3 31 31 H 1.08997 * 109.47379 * 239.99795 * 2 1 3 32 32 H 1.09000 * 109.46976 * 119.99876 * 2 1 3 33 33 H 1.08998 * 109.30133 * 319.40634 * 4 3 2 34 34 H 1.08991 * 109.30426 * 78.78637 * 4 3 2 35 35 H 1.09000 * 109.60463 * 69.00731 * 5 4 3 36 36 H 1.09002 * 109.60167 * 189.48911 * 5 4 3 37 37 H 1.09002 * 109.67770 * 307.78882 * 6 5 4 38 38 H 1.08994 * 109.67637 * 187.25144 * 6 5 4 39 39 H 1.00903 * 111.00080 * 81.47522 * 9 7 6 40 40 H 1.09003 * 109.46522 * 60.00501 * 10 9 7 41 41 H 1.08991 * 109.47064 * 300.00348 * 10 9 7 42 42 H 0.96696 * 114.00637 * 59.99764 * 13 11 10 43 43 H 1.08997 * 109.47382 * 58.46236 * 14 11 10 44 44 H 1.09007 * 109.46950 * 298.46510 * 14 11 10 45 45 H 1.09000 * 109.47208 * 65.42105 * 16 15 14 46 46 H 1.09003 * 109.46711 * 185.42510 * 16 15 14 47 47 H 1.08998 * 109.46795 * 305.41992 * 16 15 14 48 48 H 1.08996 * 109.47651 * 290.01020 * 17 15 14 49 49 H 1.09006 * 109.46675 * 50.00723 * 17 15 14 50 50 H 0.97008 * 120.00072 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2465 2.0250 -1.2875 5 6 3.1705 3.2327 -1.1257 6 6 2.6276 4.1192 0.0014 7 6 2.7713 3.3622 1.3241 8 1 3.8251 3.3118 1.5984 9 7 2.0272 4.0698 2.3746 10 6 2.5853 3.7791 3.7020 11 6 1.7855 4.5315 4.7674 12 1 1.7689 5.5944 4.5262 13 8 0.4479 4.0297 4.8017 14 6 2.4413 4.3292 6.1349 15 7 1.6946 5.0814 7.1521 16 6 2.0443 4.6273 8.5047 17 6 1.9177 6.5261 7.0077 18 6 0.9574 7.2740 7.8963 19 1 0.2521 6.7303 8.5075 20 6 0.9791 8.6522 7.9290 21 7 0.1414 9.3047 8.7048 22 14 2.1994 9.5924 6.8725 23 1 1.5893 9.8812 5.5497 24 1 2.5543 10.8689 7.5431 25 1 3.4246 8.7746 6.6846 26 6 2.2266 1.9704 1.1781 27 8 1.9625 1.3488 2.1854 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.7041 1.3104 -1.9716 34 1 1.2927 2.3540 -1.6999 35 1 4.1749 2.8934 -0.8722 36 1 3.1976 3.7997 -2.0562 37 1 1.5765 4.3425 -0.1812 38 1 3.1981 5.0469 0.0458 39 1 1.0448 3.8422 2.3377 40 1 3.6269 4.0985 3.7360 41 1 2.5273 2.7077 3.8938 42 1 0.3864 3.0877 5.0110 43 1 3.4703 4.6869 6.1009 44 1 2.4334 3.2690 6.3884 45 1 3.0887 4.8634 8.7086 46 1 1.4089 5.1317 9.2328 47 1 1.8945 3.5501 8.5764 48 1 2.9412 6.7663 7.2954 49 1 1.7542 6.8171 5.9700 50 1 0.1569 10.2744 8.7282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905553963.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:23 Heat of formation + Delta-G solvation = -76.172303 kcal Electronic energy + Delta-G solvation = -27304.661270 eV Core-core repulsion = 23559.878354 eV Total energy + Delta-G solvation = -3744.782916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.03596 -38.19554 -36.84431 -36.37642 -35.31862 -33.39732 -32.35931 -30.58712 -30.05297 -28.52531 -27.79238 -25.52809 -24.51880 -23.49978 -22.72796 -22.23891 -21.41420 -19.87970 -18.94949 -17.43042 -16.96935 -16.88364 -16.18286 -16.00131 -15.62529 -15.05288 -14.81500 -14.57675 -14.34403 -14.27308 -14.11415 -13.80792 -13.70341 -13.31490 -13.08444 -12.87997 -12.66436 -12.34254 -12.29987 -12.20298 -12.09771 -11.65086 -11.59266 -11.46344 -11.38547 -11.24592 -11.17154 -11.00943 -10.67460 -10.43540 -10.21792 -10.08636 -9.82049 -9.52776 -9.13351 -9.09414 -8.48934 -8.45725 -7.25317 -5.96958 -3.93143 2.31862 2.63652 3.34877 3.41233 3.43255 3.85310 4.15033 4.30450 4.44358 4.49276 4.50677 4.70523 4.74547 4.85388 4.95873 5.00582 5.02159 5.04066 5.15053 5.30628 5.32134 5.35328 5.36712 5.40717 5.45914 5.59514 5.61834 5.68229 5.79298 5.80595 5.85338 5.87451 6.01820 6.10969 6.12298 6.31404 6.50522 6.72091 6.81469 6.93723 7.05425 7.08102 7.23669 7.68498 7.86127 7.95970 8.12218 8.18758 8.75227 9.12446 9.65078 11.16437 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.019686 B = 0.002880 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.022168 B = 9719.893857 C =10487.523415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 N -0.602 5.602 4 C 0.112 3.888 5 C -0.136 4.136 6 C -0.112 4.112 7 C 0.077 3.923 8 H 0.106 0.894 9 N -0.654 5.654 10 C 0.021 3.979 11 C 0.116 3.884 12 H 0.107 0.893 13 O -0.541 6.541 14 C 0.025 3.975 15 N -0.521 5.521 16 C 0.039 3.961 17 C 0.161 3.839 18 C -0.504 4.504 19 H 0.080 0.920 20 C 0.067 3.933 21 N -0.902 5.902 22 Si 0.874 3.126 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.269 1.269 26 C 0.487 3.513 27 O -0.546 6.546 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.353 0.647 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.363 0.637 43 H 0.030 0.970 44 H 0.064 0.936 45 H 0.010 0.990 46 H 0.079 0.921 47 H 0.045 0.955 48 H -0.015 1.015 49 H 0.026 0.974 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.669 -18.045 -23.692 30.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.021 4.021 3 N -0.336 5.336 4 C -0.011 4.011 5 C -0.175 4.175 6 C -0.150 4.150 7 C -0.037 4.037 8 H 0.123 0.877 9 N -0.286 5.286 10 C -0.109 4.109 11 C 0.056 3.944 12 H 0.124 0.876 13 O -0.344 6.344 14 C -0.105 4.105 15 N -0.245 5.245 16 C -0.109 4.109 17 C 0.035 3.965 18 C -0.542 4.542 19 H 0.098 0.902 20 C -0.134 4.134 21 N -0.542 5.542 22 Si 0.701 3.299 23 H -0.200 1.200 24 H -0.213 1.213 25 H -0.194 1.194 26 C 0.273 3.727 27 O -0.423 6.423 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.172 0.828 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.209 0.791 43 H 0.048 0.952 44 H 0.082 0.918 45 H 0.029 0.971 46 H 0.098 0.902 47 H 0.064 0.936 48 H 0.003 0.997 49 H 0.044 0.956 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.195 -17.024 -23.371 29.796 hybrid contribution 1.395 -0.712 -0.261 1.588 sum 8.591 -17.735 -23.632 30.770 Atomic orbital electron populations 1.22080 0.95625 1.02258 1.02436 1.21501 0.94846 0.82696 1.03033 1.47535 1.65383 1.14546 1.06163 1.21440 0.99813 0.95264 0.84543 1.21906 0.99290 0.95977 1.00281 1.21660 1.02937 0.98859 0.91544 1.21669 0.99910 0.87597 0.94535 0.87652 1.60748 1.07947 1.57200 1.02657 1.22869 0.99319 0.99861 0.88862 1.21938 0.82056 0.99205 0.91229 0.87569 1.86660 1.26139 1.28530 1.93077 1.22711 0.95413 0.98510 0.93892 1.61854 1.55093 1.05954 1.01572 1.22230 0.98318 0.98540 0.91832 1.20234 0.95105 0.83772 0.97412 1.21031 1.18082 0.90925 1.24155 0.90171 1.24897 0.95578 0.97550 0.95405 1.69898 1.37231 1.07771 1.39280 0.86879 0.82310 0.79572 0.81118 1.20018 1.21296 1.19372 1.21552 0.78266 0.89967 0.82904 1.90702 1.51929 1.64076 1.35594 0.91646 0.91976 0.92711 0.90811 0.89732 0.90738 0.91612 0.90950 0.89345 0.90714 0.89717 0.82767 0.90717 0.92690 0.79094 0.95158 0.91751 0.97140 0.90244 0.93587 0.99690 0.95623 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.23 37.16 0.38 -0.87 16 2 C 0.10 0.78 5.92 -4.04 -0.02 0.76 16 3 N -0.60 -5.03 2.81 -174.97 -0.49 -5.52 16 4 C 0.11 0.59 6.39 -4.49 -0.03 0.56 16 5 C -0.14 -0.67 6.02 -26.60 -0.16 -0.83 16 6 C -0.11 -0.83 5.64 -26.52 -0.15 -0.98 16 7 C 0.08 0.77 2.73 -69.08 -0.19 0.58 16 8 H 0.11 1.02 7.79 -51.93 -0.40 0.61 16 9 N -0.65 -8.26 6.15 -108.19 -0.67 -8.92 16 10 C 0.02 0.28 5.03 -3.82 -0.02 0.26 16 11 C 0.12 1.94 3.23 -26.73 -0.09 1.85 16 12 H 0.11 2.06 6.55 -51.93 -0.34 1.72 16 13 O -0.54 -9.58 12.75 -35.23 -0.45 -10.03 16 14 C 0.02 0.43 4.63 -3.82 -0.02 0.41 16 15 N -0.52 -11.46 4.60 -244.36 -1.12 -12.58 16 16 C 0.04 0.79 9.33 60.07 0.56 1.35 16 17 C 0.16 4.09 3.64 -4.98 -0.02 4.07 16 18 C -0.50 -14.90 9.09 -34.44 -0.31 -15.22 16 19 H 0.08 2.58 7.34 -52.48 -0.39 2.20 16 20 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 21 N -0.90 -28.46 13.96 55.43 0.77 -27.68 16 22 Si 0.87 22.18 27.47 -169.99 -4.67 17.52 16 23 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 25 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 26 C 0.49 5.39 6.92 -11.87 -0.08 5.31 16 27 O -0.55 -7.89 14.14 5.56 0.08 -7.81 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.38 7.86 -51.93 -0.41 -0.03 16 32 H 0.08 0.80 7.20 -51.93 -0.37 0.43 16 33 H 0.07 0.27 7.92 -51.93 -0.41 -0.14 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 36 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.35 4.84 8.02 -39.29 -0.31 4.52 16 40 H 0.07 0.95 8.05 -51.93 -0.42 0.54 16 41 H 0.05 0.78 6.47 -51.93 -0.34 0.44 16 42 H 0.36 5.32 9.05 45.56 0.41 5.73 16 43 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 44 H 0.06 1.01 7.88 -51.93 -0.41 0.60 16 45 H 0.01 0.20 8.13 -51.93 -0.42 -0.23 16 46 H 0.08 1.76 6.90 -51.93 -0.36 1.40 16 47 H 0.05 0.78 7.97 -51.93 -0.41 0.37 16 48 H -0.01 -0.37 7.17 -51.93 -0.37 -0.74 16 49 H 0.03 0.66 5.81 -51.93 -0.30 0.36 16 50 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 388.46 15.07 5.85 5.85 Total: -1.00 -34.81 388.46 -9.16 -43.97 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -8.22 Total: 6.05 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -0.24 Total: -0.84 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -1.51 Total: -54.71 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.37 Total: -17.84 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.81 -9.16 -43.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905553963.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.199 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds