Wall clock time and date at job start Fri Apr 10 2020 18:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47294 * 2 1 4 4 C 1.45748 * 117.94750 * 269.97992 * 3 2 1 5 5 C 1.52921 * 110.48513 * 199.09668 * 4 3 2 6 6 C 1.53329 * 108.68901 * 309.25592 * 5 4 3 7 7 C 1.53076 * 108.42446 * 67.51880 * 6 5 4 8 8 H 1.09005 * 109.32965 * 71.18541 * 7 6 5 9 9 N 1.46893 * 109.40279 * 190.96664 * 7 6 5 10 10 C 1.46899 * 111.00167 * 205.42830 * 9 7 6 11 11 C 1.53003 * 109.46954 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.47166 * 304.99913 * 11 10 9 13 13 O 1.42896 * 109.46971 * 65.00557 * 11 10 9 14 14 C 1.53003 * 109.46872 * 185.00574 * 11 10 9 15 15 N 1.46900 * 109.46868 * 178.46800 * 14 11 10 16 16 C 1.46906 * 110.99736 * 164.06917 * 15 14 11 17 17 C 1.46900 * 110.99907 * 288.01287 * 15 14 11 18 18 C 1.50694 * 109.47223 * 170.00205 * 17 15 14 19 19 H 1.08007 * 120.00040 * 0.02562 * 18 17 15 20 20 C 1.37878 * 120.00389 * 180.02562 * 18 17 15 21 21 N 1.31508 * 120.00059 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99555 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47113 * 90.00957 * 22 20 18 24 24 H 1.48507 * 109.47173 * 210.00373 * 22 20 18 25 25 H 1.48500 * 109.47515 * 330.00740 * 22 20 18 26 26 C 1.33358 * 117.94359 * 89.99793 * 3 2 1 27 27 O 1.21280 * 118.24819 * 357.75686 * 26 3 2 28 28 H 1.08997 * 109.47624 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47379 * 300.00205 * 1 2 3 30 30 H 1.09000 * 109.46976 * 60.00124 * 1 2 3 31 31 H 1.08997 * 109.47379 * 239.99795 * 2 1 3 32 32 H 1.09000 * 109.46976 * 119.99876 * 2 1 3 33 33 H 1.08998 * 109.30133 * 319.40634 * 4 3 2 34 34 H 1.08991 * 109.30426 * 78.78637 * 4 3 2 35 35 H 1.09000 * 109.60463 * 69.00731 * 5 4 3 36 36 H 1.09002 * 109.60167 * 189.48911 * 5 4 3 37 37 H 1.09002 * 109.67770 * 307.78882 * 6 5 4 38 38 H 1.08994 * 109.67637 * 187.25144 * 6 5 4 39 39 H 1.00903 * 111.00080 * 81.47522 * 9 7 6 40 40 H 1.09003 * 109.46522 * 60.00501 * 10 9 7 41 41 H 1.08991 * 109.47064 * 300.00348 * 10 9 7 42 42 H 0.96696 * 114.00637 * 59.99764 * 13 11 10 43 43 H 1.08997 * 109.47382 * 58.46236 * 14 11 10 44 44 H 1.09007 * 109.46950 * 298.46510 * 14 11 10 45 45 H 1.09000 * 109.47208 * 65.42105 * 16 15 14 46 46 H 1.09003 * 109.46711 * 185.42510 * 16 15 14 47 47 H 1.08998 * 109.46795 * 305.41992 * 16 15 14 48 48 H 1.08996 * 109.47651 * 290.01020 * 17 15 14 49 49 H 1.09006 * 109.46675 * 50.00723 * 17 15 14 50 50 H 0.97008 * 120.00072 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2465 2.0250 -1.2875 5 6 3.1705 3.2327 -1.1257 6 6 2.6276 4.1192 0.0014 7 6 2.7713 3.3622 1.3241 8 1 3.8251 3.3118 1.5984 9 7 2.0272 4.0698 2.3746 10 6 2.5853 3.7791 3.7020 11 6 1.7855 4.5315 4.7674 12 1 1.7689 5.5944 4.5262 13 8 0.4479 4.0297 4.8017 14 6 2.4413 4.3292 6.1349 15 7 1.6946 5.0814 7.1521 16 6 2.0443 4.6273 8.5047 17 6 1.9177 6.5261 7.0077 18 6 0.9574 7.2740 7.8963 19 1 0.2521 6.7303 8.5075 20 6 0.9791 8.6522 7.9290 21 7 0.1414 9.3047 8.7048 22 14 2.1994 9.5924 6.8725 23 1 1.5893 9.8812 5.5497 24 1 2.5543 10.8689 7.5431 25 1 3.4246 8.7746 6.6846 26 6 2.2266 1.9704 1.1781 27 8 1.9625 1.3488 2.1854 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.7041 1.3104 -1.9716 34 1 1.2927 2.3540 -1.6999 35 1 4.1749 2.8934 -0.8722 36 1 3.1976 3.7997 -2.0562 37 1 1.5765 4.3425 -0.1812 38 1 3.1981 5.0469 0.0458 39 1 1.0448 3.8422 2.3377 40 1 3.6269 4.0985 3.7360 41 1 2.5273 2.7077 3.8938 42 1 0.3864 3.0877 5.0110 43 1 3.4703 4.6869 6.1009 44 1 2.4334 3.2690 6.3884 45 1 3.0887 4.8634 8.7086 46 1 1.4089 5.1317 9.2328 47 1 1.8945 3.5501 8.5764 48 1 2.9412 6.7663 7.2954 49 1 1.7542 6.8171 5.9700 50 1 0.1569 10.2744 8.7282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905553963.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:22 Heat of formation + Delta-G solvation = -105.408174 kcal Electronic energy + Delta-G solvation = -27305.929032 eV Core-core repulsion = 23559.878354 eV Total energy + Delta-G solvation = -3746.050679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.78265 -39.57257 -37.65719 -37.51434 -36.57439 -34.59368 -34.20701 -31.57726 -30.87772 -30.07962 -29.22508 -26.77651 -25.35662 -24.87391 -23.75672 -22.98703 -22.62709 -21.61663 -19.63840 -19.05598 -18.17810 -17.68988 -17.43807 -17.04268 -16.75691 -16.35206 -16.21764 -15.88228 -15.50232 -15.36532 -15.10646 -14.77974 -14.73204 -14.46403 -14.36481 -14.14328 -14.06258 -13.50870 -13.37032 -13.23044 -12.97971 -12.92633 -12.77531 -12.63870 -12.39833 -12.27741 -12.26521 -12.16764 -12.02309 -11.86204 -11.75502 -11.67030 -11.44226 -11.02709 -10.77384 -10.76113 -9.74635 -9.42150 -8.97216 -8.27779 -6.30686 1.33740 1.36172 1.46144 1.50718 2.01096 2.34779 2.85250 3.05305 3.31417 3.48881 3.67614 3.80886 3.87607 3.95749 4.04493 4.14505 4.16698 4.23326 4.28275 4.38486 4.43222 4.45533 4.52894 4.57815 4.61659 4.65226 4.69256 4.75343 4.83198 4.84364 4.89201 4.97966 4.99758 5.06750 5.16042 5.17325 5.20824 5.23952 5.33184 5.52195 5.55407 5.85401 5.98963 6.14175 6.36945 6.43419 6.64765 6.74848 6.94505 7.09768 7.32356 8.89223 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.019686 B = 0.002880 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.022168 B = 9719.893857 C =10487.523415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.598 5.598 4 C 0.105 3.895 5 C -0.128 4.128 6 C -0.108 4.108 7 C 0.076 3.924 8 H 0.111 0.889 9 N -0.661 5.661 10 C 0.037 3.963 11 C 0.121 3.879 12 H 0.078 0.922 13 O -0.561 6.561 14 C 0.027 3.973 15 N -0.542 5.542 16 C 0.042 3.958 17 C 0.174 3.826 18 C -0.515 4.515 19 H 0.035 0.965 20 C 0.005 3.995 21 N -0.949 5.949 22 Si 0.948 3.052 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.250 1.250 26 C 0.480 3.520 27 O -0.589 6.589 28 H 0.078 0.922 29 H 0.028 0.972 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.343 0.657 40 H 0.087 0.913 41 H 0.051 0.949 42 H 0.376 0.624 43 H 0.042 0.958 44 H 0.089 0.911 45 H 0.019 0.981 46 H 0.046 0.954 47 H 0.079 0.921 48 H -0.013 1.013 49 H 0.026 0.974 50 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.948 -18.871 -27.059 34.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.330 5.330 4 C -0.017 4.017 5 C -0.166 4.166 6 C -0.146 4.146 7 C -0.037 4.037 8 H 0.128 0.872 9 N -0.291 5.291 10 C -0.093 4.093 11 C 0.061 3.939 12 H 0.096 0.904 13 O -0.367 6.367 14 C -0.102 4.102 15 N -0.266 5.266 16 C -0.106 4.106 17 C 0.047 3.953 18 C -0.553 4.553 19 H 0.053 0.947 20 C -0.192 4.192 21 N -0.590 5.590 22 Si 0.771 3.229 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.174 1.174 26 C 0.267 3.733 27 O -0.470 6.470 28 H 0.097 0.903 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.131 0.869 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.162 0.838 40 H 0.105 0.895 41 H 0.069 0.931 42 H 0.223 0.777 43 H 0.060 0.940 44 H 0.107 0.893 45 H 0.038 0.962 46 H 0.065 0.935 47 H 0.097 0.903 48 H 0.004 0.996 49 H 0.044 0.956 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.488 -17.884 -26.784 33.574 hybrid contribution 0.586 -0.562 0.793 1.135 sum 10.074 -18.446 -25.991 33.425 Atomic orbital electron populations 1.22028 0.95672 1.02817 1.01315 1.21596 0.94775 0.82457 1.03492 1.47653 1.63965 1.14771 1.06569 1.21740 1.00705 0.95999 0.83251 1.21907 0.99086 0.95464 1.00193 1.21653 1.02742 0.99201 0.90996 1.21788 0.99565 0.87357 0.94966 0.87166 1.60797 1.07624 1.57862 1.02807 1.22632 0.99180 0.98892 0.88575 1.21818 0.82075 0.98091 0.91893 0.90359 1.86614 1.27044 1.29738 1.93260 1.22794 0.95380 0.99167 0.92863 1.61728 1.56974 1.04495 1.03424 1.22189 0.97978 1.00122 0.90278 1.19950 0.93608 0.85748 0.96041 1.21263 1.18165 0.91521 1.24362 0.94707 1.25876 0.97776 0.98644 0.96855 1.70056 1.39399 1.08367 1.41208 0.85710 0.79995 0.78124 0.79107 1.19026 1.20409 1.17423 1.21717 0.78157 0.90189 0.83229 1.90678 1.54040 1.65077 1.37196 0.90346 0.95251 0.91493 0.87485 0.92047 0.88069 0.90790 0.90502 0.86874 0.91494 0.89462 0.83810 0.89499 0.93109 0.77681 0.94002 0.89297 0.96223 0.93531 0.90254 0.99556 0.95629 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 10.23 71.98 0.74 -1.53 16 2 C 0.10 1.36 5.92 86.38 0.51 1.88 16 3 N -0.60 -8.89 2.81 -826.67 -2.32 -11.22 16 4 C 0.10 0.75 6.39 86.49 0.55 1.30 16 5 C -0.13 -0.82 6.02 30.68 0.18 -0.64 16 6 C -0.11 -1.38 5.64 30.73 0.17 -1.20 16 7 C 0.08 1.44 2.73 44.03 0.12 1.56 16 8 H 0.11 1.95 7.79 -2.38 -0.02 1.93 16 9 N -0.66 -16.33 6.15 -496.19 -3.05 -19.38 16 10 C 0.04 0.98 5.03 86.30 0.43 1.41 16 11 C 0.12 4.00 3.23 30.60 0.10 4.10 16 12 H 0.08 3.04 6.55 -2.38 -0.02 3.03 16 13 O -0.56 -20.03 12.75 -148.98 -1.90 -21.93 16 14 C 0.03 0.90 4.63 86.30 0.40 1.30 16 15 N -0.54 -23.75 4.60 -927.03 -4.27 -28.02 16 16 C 0.04 1.70 9.33 127.69 1.19 2.89 16 17 C 0.17 8.82 3.64 85.55 0.31 9.13 16 18 C -0.51 -31.45 9.09 25.60 0.23 -31.22 16 19 H 0.03 2.37 7.34 -2.91 -0.02 2.35 16 20 C 0.01 0.33 5.47 84.66 0.46 0.79 16 21 N -0.95 -61.60 13.96 21.45 0.30 -61.30 16 22 Si 0.95 45.81 27.47 68.60 1.88 47.70 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 26 C 0.48 10.29 6.92 87.71 0.61 10.89 16 27 O -0.59 -17.22 14.14 -3.03 -0.04 -17.26 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.11 0.76 7.86 -2.39 -0.02 0.74 16 32 H 0.06 1.15 7.20 -2.39 -0.02 1.13 16 33 H 0.10 0.26 7.92 -2.39 -0.02 0.24 16 34 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.08 0.47 8.12 -2.39 -0.02 0.45 16 36 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.07 0.97 8.13 -2.39 -0.02 0.95 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.34 9.53 8.02 -89.69 -0.72 8.81 16 40 H 0.09 2.06 8.05 -2.39 -0.02 2.04 16 41 H 0.05 1.40 6.47 -2.39 -0.02 1.39 16 42 H 0.38 11.04 9.05 -74.06 -0.67 10.37 16 43 H 0.04 1.34 8.05 -2.39 -0.02 1.32 16 44 H 0.09 2.57 7.88 -2.38 -0.02 2.55 16 45 H 0.02 0.73 8.13 -2.39 -0.02 0.71 16 46 H 0.05 2.13 6.90 -2.39 -0.02 2.12 16 47 H 0.08 2.59 7.97 -2.39 -0.02 2.58 16 48 H -0.01 -0.66 7.17 -2.39 -0.02 -0.67 16 49 H 0.03 1.31 5.81 -2.38 -0.01 1.29 16 50 H 0.27 16.06 8.31 -92.70 -0.77 15.29 16 Total: -1.00 -78.90 388.46 -3.91 -82.81 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: -0.52 Total: 27.92 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 6.02 Total: 0.67 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -9.34 Total: -119.90 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -1.94 Total: -39.19 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.88 Total: 47.70 kcal Total: -78.90 -3.91 -82.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905553963.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.599 kcal (2) G-P(sol) polarization free energy of solvation -78.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds