Wall clock time and date at job start Fri Apr 10 2020 18:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47278 * 2 1 4 4 C 1.45756 * 117.94924 * 270.02452 * 3 2 1 5 5 C 1.52916 * 110.49280 * 160.92204 * 4 3 2 6 6 C 1.53369 * 108.66209 * 50.76025 * 5 4 3 7 7 C 1.53064 * 108.41405 * 292.45042 * 6 5 4 8 8 H 1.09004 * 109.33386 * 288.82076 * 7 6 5 9 9 N 1.46900 * 109.40394 * 169.03620 * 7 6 5 10 10 C 1.46900 * 110.99956 * 154.56791 * 9 7 6 11 11 C 1.53006 * 109.46944 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47222 * 305.00213 * 11 10 9 13 13 O 1.42900 * 109.47016 * 64.99881 * 11 10 9 14 14 C 1.52998 * 109.47210 * 185.00066 * 11 10 9 15 15 N 1.46903 * 109.47073 * 179.97438 * 14 11 10 16 16 C 1.46901 * 110.99788 * 293.95231 * 15 14 11 17 17 C 1.46901 * 110.99790 * 170.00177 * 15 14 11 18 18 C 1.50701 * 109.46921 * 189.99765 * 17 15 14 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 15 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47294 * 60.00559 * 22 20 18 24 24 H 1.48503 * 109.46954 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47431 * 300.00157 * 22 20 18 26 26 C 1.33356 * 117.94693 * 90.00022 * 3 2 1 27 27 O 1.21276 * 118.24791 * 2.22204 * 26 3 2 28 28 H 1.08997 * 109.47381 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47338 * 299.99804 * 1 2 3 30 30 H 1.09003 * 109.47530 * 60.00026 * 1 2 3 31 31 H 1.08999 * 109.47338 * 240.00196 * 2 1 3 32 32 H 1.09003 * 109.47530 * 119.99974 * 2 1 3 33 33 H 1.09007 * 109.29619 * 281.23615 * 4 3 2 34 34 H 1.09000 * 109.29863 * 40.81092 * 4 3 2 35 35 H 1.08997 * 109.60499 * 170.50480 * 5 4 3 36 36 H 1.08994 * 109.60425 * 290.83696 * 5 4 3 37 37 H 1.08994 * 109.67308 * 172.72126 * 6 5 4 38 38 H 1.09001 * 109.68482 * 52.17757 * 6 5 4 39 39 H 1.00903 * 110.99529 * 30.61853 * 9 7 6 40 40 H 1.08995 * 109.47482 * 60.00579 * 10 9 7 41 41 H 1.08996 * 109.47270 * 300.00045 * 10 9 7 42 42 H 0.96701 * 114.00146 * 60.00491 * 13 11 10 43 43 H 1.09003 * 109.47179 * 59.99837 * 14 11 10 44 44 H 1.08993 * 109.47094 * 299.99998 * 14 11 10 45 45 H 1.09001 * 109.47121 * 296.04690 * 16 15 14 46 46 H 1.09005 * 109.47342 * 56.04784 * 16 15 14 47 47 H 1.08999 * 109.46894 * 176.04703 * 16 15 14 48 48 H 1.09002 * 109.47401 * 69.99793 * 17 15 14 49 49 H 1.09001 * 109.46874 * 309.99805 * 17 15 14 50 50 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2455 2.0255 -1.2876 5 6 2.2864 3.5455 -1.1258 6 6 3.2670 3.8928 0.0012 7 6 2.6793 3.3949 1.3239 8 1 1.8286 4.0188 1.5984 9 7 3.7031 3.4764 2.3742 10 6 3.0866 3.6018 3.7017 11 6 4.1819 3.6843 4.7669 12 1 4.8441 2.8234 4.6747 13 8 4.9342 4.8855 4.5844 14 6 3.5424 3.6893 6.1568 15 7 4.5940 3.7680 7.1795 16 6 5.4204 2.5534 7.1793 17 6 4.0185 4.0129 8.5086 18 6 5.1229 4.3306 9.4835 19 1 6.1496 4.3491 9.1490 20 6 4.8225 4.5987 10.8022 21 7 3.5722 4.5766 11.2093 22 14 6.1915 4.9931 12.0103 23 1 6.9198 6.2046 11.5550 24 1 5.6097 5.2407 13.3540 25 1 7.1334 3.8473 12.0827 26 6 2.2266 1.9704 1.1780 27 8 2.0410 1.3211 2.1854 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.1940 1.6813 -1.7001 34 1 1.4383 1.7604 -1.9704 35 1 2.6219 4.0034 -2.0563 36 1 1.2917 3.9135 -0.8749 37 1 3.4075 4.9728 0.0455 38 1 4.2243 3.4049 -0.1817 39 1 4.3414 4.2379 2.1986 40 1 2.4575 2.7327 3.8938 41 1 2.4782 4.5054 3.7359 42 1 4.4077 5.6937 4.6534 43 1 2.9685 2.7730 6.2960 44 1 2.8803 4.5501 6.2490 45 1 4.8069 1.6965 7.4579 46 1 5.8341 2.3955 6.1833 47 1 6.2332 2.6669 7.8966 48 1 3.4837 3.1237 8.8426 49 1 3.3273 4.8541 8.4558 50 1 3.3609 4.7648 12.1372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905553965.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:25 Heat of formation + Delta-G solvation = -78.986103 kcal Electronic energy + Delta-G solvation = -26915.395971 eV Core-core repulsion = 23170.491039 eV Total energy + Delta-G solvation = -3744.904932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.87582 -38.21491 -36.74140 -36.37253 -35.27132 -33.40482 -32.45287 -30.57087 -29.99047 -28.39691 -26.94797 -25.67842 -24.78574 -23.75430 -22.72363 -22.17804 -21.13111 -20.06826 -18.94854 -17.07368 -16.94720 -16.46030 -16.28301 -15.86837 -15.65273 -15.01391 -14.82822 -14.70755 -14.44723 -14.16407 -14.05063 -13.89862 -13.61247 -13.46823 -13.23728 -12.76747 -12.64311 -12.37720 -12.28258 -11.97254 -11.81931 -11.73100 -11.64197 -11.35699 -11.22512 -11.16743 -11.01986 -10.81343 -10.68203 -10.59292 -10.23531 -10.00786 -9.80464 -9.51168 -9.05104 -8.97781 -8.53050 -8.37353 -7.10022 -5.96650 -3.97398 2.49202 2.69305 3.38489 3.41505 3.45396 3.85987 4.16352 4.25288 4.40354 4.45079 4.51794 4.74875 4.78952 4.85891 4.90379 4.98975 5.02886 5.06979 5.14567 5.26005 5.29586 5.33449 5.37904 5.41245 5.45149 5.49251 5.59602 5.67774 5.72674 5.81803 5.86263 5.99854 6.18960 6.21407 6.32251 6.44005 6.52849 6.78031 6.87541 7.16825 7.32543 7.35139 7.41791 7.86912 8.03818 8.06767 8.17884 8.29560 8.63563 9.10552 9.66383 11.14369 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.027846 B = 0.002310 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.279423 B =12120.832545 C =12659.824143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 N -0.607 5.607 4 C 0.114 3.886 5 C -0.133 4.133 6 C -0.127 4.127 7 C 0.077 3.923 8 H 0.074 0.926 9 N -0.666 5.666 10 C 0.027 3.973 11 C 0.115 3.885 12 H 0.103 0.897 13 O -0.548 6.548 14 C 0.026 3.974 15 N -0.529 5.529 16 C 0.038 3.962 17 C 0.192 3.808 18 C -0.504 4.504 19 H 0.063 0.937 20 C 0.053 3.947 21 N -0.901 5.901 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.289 1.289 25 H -0.277 1.277 26 C 0.526 3.474 27 O -0.532 6.532 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.354 0.646 40 H 0.096 0.904 41 H 0.030 0.970 42 H 0.366 0.634 43 H 0.030 0.970 44 H 0.067 0.933 45 H 0.009 0.991 46 H 0.047 0.953 47 H 0.072 0.928 48 H -0.011 1.011 49 H 0.027 0.973 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.716 -3.778 -30.444 31.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.020 4.020 3 N -0.342 5.342 4 C -0.009 4.009 5 C -0.171 4.171 6 C -0.165 4.165 7 C -0.036 4.036 8 H 0.091 0.909 9 N -0.300 5.300 10 C -0.103 4.103 11 C 0.056 3.944 12 H 0.121 0.879 13 O -0.351 6.351 14 C -0.104 4.104 15 N -0.253 5.253 16 C -0.111 4.111 17 C 0.067 3.933 18 C -0.543 4.543 19 H 0.081 0.919 20 C -0.148 4.148 21 N -0.541 5.541 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.203 1.203 26 C 0.313 3.687 27 O -0.408 6.408 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.174 0.826 40 H 0.114 0.886 41 H 0.048 0.952 42 H 0.212 0.788 43 H 0.048 0.952 44 H 0.086 0.914 45 H 0.028 0.972 46 H 0.066 0.934 47 H 0.091 0.909 48 H 0.007 0.993 49 H 0.045 0.955 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.036 -4.776 -29.855 30.652 hybrid contribution -0.857 0.795 0.918 1.486 sum -5.893 -3.981 -28.938 29.799 Atomic orbital electron populations 1.22092 0.95913 1.02254 1.02119 1.21453 0.94395 0.82728 1.03389 1.47384 1.66489 1.14527 1.05834 1.21383 1.01584 0.93017 0.84932 1.21854 1.00543 0.94894 0.99851 1.21876 0.99819 1.02021 0.92773 1.21355 0.95962 0.92975 0.93324 0.90856 1.60033 1.17391 1.51860 1.00699 1.22892 0.97248 1.01546 0.88619 1.21967 0.92499 0.88640 0.91338 0.87884 1.86588 1.39055 1.15157 1.94349 1.22674 0.94511 1.00407 0.92841 1.62036 1.20960 1.35394 1.06938 1.22236 0.98165 0.90359 1.00342 1.19744 0.95015 0.95451 0.83066 1.21143 0.93765 1.46514 0.92831 0.91857 1.25000 0.95607 0.95771 0.98384 1.69956 1.17366 1.50070 1.16713 0.86545 0.81947 0.78946 0.79870 1.20154 1.21430 1.20291 1.20089 0.76726 0.89216 0.82709 1.90679 1.50698 1.63813 1.35581 0.91576 0.92225 0.92837 0.90788 0.89339 0.91621 0.90779 0.89390 0.90930 0.90409 0.89907 0.82555 0.88561 0.95220 0.78815 0.95167 0.91430 0.97234 0.93407 0.90924 0.99300 0.95461 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.23 37.15 0.38 -0.83 16 2 C 0.10 0.84 5.94 -4.05 -0.02 0.82 16 3 N -0.61 -5.35 2.81 -174.96 -0.49 -5.84 16 4 C 0.11 0.59 6.32 -4.49 -0.03 0.57 16 5 C -0.13 -0.59 6.02 -26.58 -0.16 -0.75 16 6 C -0.13 -0.80 5.29 -26.51 -0.14 -0.94 16 7 C 0.08 0.75 2.76 -69.08 -0.19 0.56 16 8 H 0.07 0.70 7.79 -51.93 -0.40 0.30 16 9 N -0.67 -7.87 6.20 -108.18 -0.67 -8.54 16 10 C 0.03 0.36 5.03 -3.82 -0.02 0.34 16 11 C 0.12 1.83 3.08 -26.73 -0.08 1.75 16 12 H 0.10 1.80 6.47 -51.93 -0.34 1.46 16 13 O -0.55 -8.63 12.72 -35.23 -0.45 -9.08 16 14 C 0.03 0.48 4.62 -3.82 -0.02 0.46 16 15 N -0.53 -12.13 4.62 -244.36 -1.13 -13.26 16 16 C 0.04 0.80 9.16 60.07 0.55 1.35 16 17 C 0.19 5.25 4.72 -4.97 -0.02 5.23 16 18 C -0.50 -14.72 8.51 -34.44 -0.29 -15.02 16 19 H 0.06 1.84 7.10 -52.49 -0.37 1.47 16 20 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 22 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.53 6.26 7.19 -11.87 -0.09 6.18 16 27 O -0.53 -8.53 14.11 5.56 0.08 -8.45 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.43 8.01 -51.93 -0.42 0.01 16 32 H 0.09 0.94 7.13 -51.93 -0.37 0.56 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.27 8.11 -51.93 -0.42 -0.15 16 35 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.57 8.13 -51.93 -0.42 0.15 16 39 H 0.35 3.77 7.91 -39.29 -0.31 3.45 16 40 H 0.10 1.52 6.47 -51.93 -0.34 1.18 16 41 H 0.03 0.36 8.05 -51.93 -0.42 -0.06 16 42 H 0.37 4.68 9.05 45.56 0.41 5.09 16 43 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 44 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 45 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 46 H 0.05 0.91 6.30 -51.93 -0.33 0.58 16 47 H 0.07 1.64 6.86 -51.93 -0.36 1.28 16 48 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 49 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 50 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 391.87 15.07 5.91 5.91 Total: -1.00 -34.90 391.87 -9.53 -44.44 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -8.26 Total: 3.17 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -0.23 Total: 1.18 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -1.56 Total: -54.44 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.37 Total: -17.53 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.90 -9.53 -44.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905553965.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.548 kcal (2) G-P(sol) polarization free energy of solvation -34.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds