Wall clock time and date at job start Fri Apr 10 2020 18:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47278 * 2 1 4 4 C 1.45756 * 117.94924 * 270.02452 * 3 2 1 5 5 C 1.52916 * 110.49280 * 160.92204 * 4 3 2 6 6 C 1.53369 * 108.66209 * 50.76025 * 5 4 3 7 7 C 1.53064 * 108.41405 * 292.45042 * 6 5 4 8 8 H 1.09004 * 109.33386 * 288.82076 * 7 6 5 9 9 N 1.46900 * 109.40394 * 169.03620 * 7 6 5 10 10 C 1.46900 * 110.99956 * 154.56791 * 9 7 6 11 11 C 1.53006 * 109.46944 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47222 * 305.00213 * 11 10 9 13 13 O 1.42900 * 109.47016 * 64.99881 * 11 10 9 14 14 C 1.52998 * 109.47210 * 185.00066 * 11 10 9 15 15 N 1.46903 * 109.47073 * 179.97438 * 14 11 10 16 16 C 1.46901 * 110.99788 * 293.95231 * 15 14 11 17 17 C 1.46901 * 110.99790 * 170.00177 * 15 14 11 18 18 C 1.50701 * 109.46921 * 189.99765 * 17 15 14 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 15 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47294 * 60.00559 * 22 20 18 24 24 H 1.48503 * 109.46954 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47431 * 300.00157 * 22 20 18 26 26 C 1.33356 * 117.94693 * 90.00022 * 3 2 1 27 27 O 1.21276 * 118.24791 * 2.22204 * 26 3 2 28 28 H 1.08997 * 109.47381 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47338 * 299.99804 * 1 2 3 30 30 H 1.09003 * 109.47530 * 60.00026 * 1 2 3 31 31 H 1.08999 * 109.47338 * 240.00196 * 2 1 3 32 32 H 1.09003 * 109.47530 * 119.99974 * 2 1 3 33 33 H 1.09007 * 109.29619 * 281.23615 * 4 3 2 34 34 H 1.09000 * 109.29863 * 40.81092 * 4 3 2 35 35 H 1.08997 * 109.60499 * 170.50480 * 5 4 3 36 36 H 1.08994 * 109.60425 * 290.83696 * 5 4 3 37 37 H 1.08994 * 109.67308 * 172.72126 * 6 5 4 38 38 H 1.09001 * 109.68482 * 52.17757 * 6 5 4 39 39 H 1.00903 * 110.99529 * 30.61853 * 9 7 6 40 40 H 1.08995 * 109.47482 * 60.00579 * 10 9 7 41 41 H 1.08996 * 109.47270 * 300.00045 * 10 9 7 42 42 H 0.96701 * 114.00146 * 60.00491 * 13 11 10 43 43 H 1.09003 * 109.47179 * 59.99837 * 14 11 10 44 44 H 1.08993 * 109.47094 * 299.99998 * 14 11 10 45 45 H 1.09001 * 109.47121 * 296.04690 * 16 15 14 46 46 H 1.09005 * 109.47342 * 56.04784 * 16 15 14 47 47 H 1.08999 * 109.46894 * 176.04703 * 16 15 14 48 48 H 1.09002 * 109.47401 * 69.99793 * 17 15 14 49 49 H 1.09001 * 109.46874 * 309.99805 * 17 15 14 50 50 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2455 2.0255 -1.2876 5 6 2.2864 3.5455 -1.1258 6 6 3.2670 3.8928 0.0012 7 6 2.6793 3.3949 1.3239 8 1 1.8286 4.0188 1.5984 9 7 3.7031 3.4764 2.3742 10 6 3.0866 3.6018 3.7017 11 6 4.1819 3.6843 4.7669 12 1 4.8441 2.8234 4.6747 13 8 4.9342 4.8855 4.5844 14 6 3.5424 3.6893 6.1568 15 7 4.5940 3.7680 7.1795 16 6 5.4204 2.5534 7.1793 17 6 4.0185 4.0129 8.5086 18 6 5.1229 4.3306 9.4835 19 1 6.1496 4.3491 9.1490 20 6 4.8225 4.5987 10.8022 21 7 3.5722 4.5766 11.2093 22 14 6.1915 4.9931 12.0103 23 1 6.9198 6.2046 11.5550 24 1 5.6097 5.2407 13.3540 25 1 7.1334 3.8473 12.0827 26 6 2.2266 1.9704 1.1780 27 8 2.0410 1.3211 2.1854 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.1940 1.6813 -1.7001 34 1 1.4383 1.7604 -1.9704 35 1 2.6219 4.0034 -2.0563 36 1 1.2917 3.9135 -0.8749 37 1 3.4075 4.9728 0.0455 38 1 4.2243 3.4049 -0.1817 39 1 4.3414 4.2379 2.1986 40 1 2.4575 2.7327 3.8938 41 1 2.4782 4.5054 3.7359 42 1 4.4077 5.6937 4.6534 43 1 2.9685 2.7730 6.2960 44 1 2.8803 4.5501 6.2490 45 1 4.8069 1.6965 7.4579 46 1 5.8341 2.3955 6.1833 47 1 6.2332 2.6669 7.8966 48 1 3.4837 3.1237 8.8426 49 1 3.3273 4.8541 8.4558 50 1 3.3609 4.7648 12.1372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905553965.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:25 Heat of formation + Delta-G solvation = -107.647928 kcal Electronic energy + Delta-G solvation = -26916.638841 eV Core-core repulsion = 23170.491039 eV Total energy + Delta-G solvation = -3746.147802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.64277 -39.60006 -37.63885 -37.49422 -36.59147 -34.63258 -34.18829 -31.55610 -30.83538 -29.65777 -28.78367 -27.18754 -25.54119 -25.15907 -23.68165 -22.95076 -22.44339 -21.80807 -19.60103 -18.58989 -17.89034 -17.66693 -17.28877 -17.14964 -16.88907 -16.69066 -16.02998 -15.71015 -15.50515 -15.39961 -15.25759 -14.84255 -14.69897 -14.58656 -14.25552 -14.03026 -13.80105 -13.55471 -13.33757 -13.25328 -12.96947 -12.85499 -12.70641 -12.59370 -12.57036 -12.42556 -12.28207 -12.15925 -12.02665 -11.92950 -11.77059 -11.65327 -11.43879 -10.85765 -10.62729 -10.61697 -9.67302 -9.45183 -9.01958 -8.21569 -6.32002 1.40236 1.44244 1.52182 1.63014 2.03069 2.39693 2.89724 3.10563 3.37316 3.54427 3.67640 3.77379 3.83713 3.93259 4.08347 4.09328 4.17065 4.20728 4.23400 4.35051 4.38960 4.47000 4.51475 4.56583 4.64419 4.67642 4.69264 4.82644 4.86558 4.86888 5.00131 5.01690 5.04081 5.06238 5.11255 5.14108 5.23641 5.27561 5.30961 5.57029 5.63126 5.84179 6.02317 6.28362 6.36330 6.55331 6.58779 6.83371 6.93950 7.24649 7.37561 8.89596 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.027846 B = 0.002310 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.279423 B =12120.832545 C =12659.824143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.099 3.901 3 N -0.603 5.603 4 C 0.105 3.895 5 C -0.127 4.127 6 C -0.120 4.120 7 C 0.077 3.923 8 H 0.076 0.924 9 N -0.675 5.675 10 C 0.042 3.958 11 C 0.135 3.865 12 H 0.089 0.911 13 O -0.555 6.555 14 C 0.025 3.975 15 N -0.534 5.534 16 C 0.042 3.958 17 C 0.207 3.793 18 C -0.524 4.524 19 H 0.062 0.938 20 C 0.000 4.000 21 N -0.936 5.936 22 Si 0.973 3.027 23 H -0.266 1.266 24 H -0.281 1.281 25 H -0.268 1.268 26 C 0.513 3.487 27 O -0.588 6.588 28 H 0.077 0.923 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.362 0.638 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.381 0.619 43 H 0.022 0.978 44 H 0.071 0.929 45 H 0.005 0.995 46 H 0.074 0.926 47 H 0.059 0.941 48 H -0.043 1.043 49 H 0.006 0.994 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.762 -2.787 -33.101 33.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.024 4.024 3 N -0.335 5.335 4 C -0.017 4.017 5 C -0.165 4.165 6 C -0.158 4.158 7 C -0.036 4.036 8 H 0.093 0.907 9 N -0.310 5.310 10 C -0.088 4.088 11 C 0.074 3.926 12 H 0.106 0.894 13 O -0.360 6.360 14 C -0.104 4.104 15 N -0.258 5.258 16 C -0.107 4.107 17 C 0.080 3.920 18 C -0.562 4.562 19 H 0.080 0.920 20 C -0.198 4.198 21 N -0.576 5.576 22 Si 0.797 3.203 23 H -0.191 1.191 24 H -0.207 1.207 25 H -0.193 1.193 26 C 0.301 3.699 27 O -0.468 6.468 28 H 0.096 0.904 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.135 0.865 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.184 0.816 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.229 0.771 43 H 0.040 0.960 44 H 0.090 0.910 45 H 0.023 0.977 46 H 0.092 0.908 47 H 0.078 0.922 48 H -0.025 1.025 49 H 0.024 0.976 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.079 -3.773 -32.593 33.063 hybrid contribution -1.205 0.449 1.640 2.084 sum -5.284 -3.324 -30.952 31.576 Atomic orbital electron populations 1.22025 0.95215 1.02875 1.01488 1.21537 0.94976 0.82636 1.03257 1.47540 1.64915 1.14684 1.06410 1.21729 1.03154 0.93541 0.83260 1.21883 1.00084 0.94296 1.00286 1.21876 0.99827 1.02873 0.91187 1.21446 0.95752 0.91874 0.94532 0.90668 1.59901 1.18297 1.52414 1.00346 1.22564 0.96032 1.01131 0.89054 1.21643 0.92500 0.88444 0.89974 0.89357 1.86553 1.39622 1.15678 1.94196 1.22791 0.93870 1.00179 0.93570 1.61976 1.21920 1.36373 1.05524 1.22210 0.97417 0.89535 1.01490 1.19423 0.94124 0.93101 0.85309 1.21426 0.94010 1.47012 0.93781 0.91952 1.25961 0.98288 0.95212 1.00362 1.70086 1.19593 1.50574 1.17385 0.85389 0.78628 0.79126 0.77188 1.19128 1.20672 1.19314 1.20596 0.76380 0.89988 0.82942 1.90656 1.53317 1.65216 1.37584 0.90430 0.95235 0.90874 0.87692 0.92606 0.90373 0.88457 0.86454 0.90923 0.88675 0.90270 0.81620 0.91058 0.93621 0.77129 0.95976 0.91050 0.97677 0.90762 0.92247 1.02501 0.97628 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 10.23 71.98 0.74 -1.48 16 2 C 0.10 1.56 5.94 86.38 0.51 2.07 16 3 N -0.60 -9.96 2.81 -826.64 -2.32 -12.28 16 4 C 0.10 0.76 6.32 86.49 0.55 1.31 16 5 C -0.13 -0.68 6.02 30.69 0.18 -0.50 16 6 C -0.12 -1.19 5.29 30.74 0.16 -1.03 16 7 C 0.08 1.43 2.76 44.03 0.12 1.55 16 8 H 0.08 1.37 7.79 -2.38 -0.02 1.35 16 9 N -0.67 -15.53 6.20 -496.18 -3.08 -18.61 16 10 C 0.04 1.14 5.03 86.31 0.43 1.58 16 11 C 0.13 4.25 3.08 30.60 0.09 4.35 16 12 H 0.09 3.09 6.47 -2.39 -0.02 3.07 16 13 O -0.55 -16.85 12.72 -148.98 -1.90 -18.74 16 14 C 0.03 0.98 4.62 86.30 0.40 1.38 16 15 N -0.53 -25.03 4.62 -927.03 -4.28 -29.31 16 16 C 0.04 1.82 9.16 127.69 1.17 2.99 16 17 C 0.21 11.72 4.72 85.56 0.40 12.12 16 18 C -0.52 -31.17 8.51 25.60 0.22 -30.95 16 19 H 0.06 3.65 7.10 -2.91 -0.02 3.63 16 20 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 21 N -0.94 -58.18 13.29 21.45 0.28 -57.90 16 22 Si 0.97 45.76 29.54 68.60 2.03 47.79 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 26 C 0.51 12.32 7.19 87.71 0.63 12.95 16 27 O -0.59 -19.98 14.11 -3.02 -0.04 -20.03 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.10 0.99 8.01 -2.39 -0.02 0.97 16 32 H 0.06 1.26 7.13 -2.39 -0.02 1.24 16 33 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 34 H 0.10 0.32 8.11 -2.39 -0.02 0.30 16 35 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 36 H 0.07 0.44 8.13 -2.39 -0.02 0.42 16 37 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.88 8.13 -2.39 -0.02 0.86 16 39 H 0.36 7.15 7.91 -89.69 -0.71 6.44 16 40 H 0.07 2.35 6.47 -2.39 -0.02 2.34 16 41 H 0.05 1.08 8.05 -2.39 -0.02 1.06 16 42 H 0.38 9.16 9.05 -74.06 -0.67 8.49 16 43 H 0.02 0.89 8.12 -2.39 -0.02 0.87 16 44 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 45 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 46 H 0.07 2.82 6.30 -2.38 -0.02 2.80 16 47 H 0.06 2.71 6.86 -2.39 -0.02 2.69 16 48 H -0.04 -2.64 8.12 -2.39 -0.02 -2.66 16 49 H 0.01 0.34 7.93 -2.39 -0.02 0.32 16 50 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -78.64 391.87 -3.69 -82.33 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -0.46 Total: 19.98 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 6.08 Total: 6.77 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -9.40 Total: -118.11 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -1.94 Total: -38.77 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -78.64 -3.69 -82.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905553965.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.319 kcal (2) G-P(sol) polarization free energy of solvation -78.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds