Wall clock time and date at job start Fri Apr 10 2020 18:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 111.00184 * 2 1 4 4 C 1.50701 * 109.47005 * 293.95511 * 3 2 1 5 5 H 1.07997 * 119.99964 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00340 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99510 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00251 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.46822 * 60.00287 * 8 6 4 10 10 H 1.48502 * 109.46889 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47185 * 300.00562 * 8 6 4 12 12 C 1.46904 * 111.00127 * 123.95228 * 2 1 3 13 13 C 1.52995 * 109.47082 * 66.04793 * 12 2 1 14 14 H 1.09003 * 109.47005 * 304.99539 * 13 12 2 15 15 O 1.42894 * 109.47279 * 64.99679 * 13 12 2 16 16 C 1.53000 * 109.47133 * 185.00170 * 13 12 2 17 17 N 1.46898 * 109.47005 * 179.97438 * 16 13 12 18 18 C 1.46904 * 110.99933 * 179.97438 * 17 16 13 19 19 C 1.52994 * 109.47115 * 179.97438 * 18 17 16 20 20 N 1.46899 * 109.47163 * 185.13486 * 19 18 17 21 21 C 1.48530 * 111.00168 * 184.26092 * 20 19 18 22 22 C 1.54939 * 103.38049 * 159.64105 * 21 20 19 23 23 C 1.54787 * 102.83176 * 322.80181 * 22 21 20 24 24 C 1.53000 * 110.15243 * 262.84659 * 23 22 21 25 25 C 1.53003 * 110.47796 * 140.76725 * 23 22 21 26 26 C 1.47900 * 111.00524 * 301.66251 * 20 19 18 27 27 H 1.09003 * 109.46858 * 296.04681 * 1 2 3 28 28 H 1.08997 * 109.47322 * 56.04700 * 1 2 3 29 29 H 1.08996 * 109.47050 * 176.05001 * 1 2 3 30 30 H 1.09006 * 109.47051 * 53.94989 * 3 2 1 31 31 H 1.09001 * 109.47705 * 173.95349 * 3 2 1 32 32 H 0.96998 * 119.99540 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.47139 * 306.04206 * 12 2 1 34 34 H 1.09007 * 109.46868 * 186.04560 * 12 2 1 35 35 H 0.96700 * 114.00077 * 60.00285 * 15 13 12 36 36 H 1.08997 * 109.47096 * 59.99535 * 16 13 12 37 37 H 1.09003 * 109.46659 * 299.99580 * 16 13 12 38 38 H 1.00901 * 111.00206 * 56.04984 * 17 16 13 39 39 H 1.09005 * 109.46691 * 60.00322 * 18 17 16 40 40 H 1.09000 * 109.47498 * 300.00183 * 18 17 16 41 41 H 1.09000 * 109.47170 * 65.14049 * 19 18 17 42 42 H 1.09003 * 109.47538 * 305.13798 * 19 18 17 43 43 H 1.09000 * 110.67244 * 278.15585 * 21 20 19 44 44 H 1.08998 * 110.66946 * 41.12302 * 21 20 19 45 45 H 1.09000 * 110.72574 * 81.02735 * 22 21 20 46 46 H 1.08994 * 110.72955 * 204.31755 * 22 21 20 47 47 H 1.08998 * 109.46764 * 175.71508 * 24 23 22 48 48 H 1.08999 * 109.46783 * 295.70970 * 24 23 22 49 49 H 1.08997 * 109.46990 * 55.71261 * 24 23 22 50 50 H 1.08998 * 109.47209 * 304.09758 * 25 23 22 51 51 H 1.09004 * 109.47158 * 64.09495 * 25 23 22 52 52 H 1.09000 * 109.47010 * 184.09369 * 25 23 22 53 53 H 1.09008 * 109.91496 * 333.50416 * 26 20 19 54 54 H 1.09002 * 109.92058 * 94.59814 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5112 -2.0488 6 6 2.0267 3.3495 -1.5286 7 7 2.7120 4.0019 -0.6150 8 14 1.5829 4.1868 -3.1384 9 1 0.1058 4.2230 -3.2866 10 1 2.1150 5.5732 -3.1383 11 1 2.1755 3.4295 -4.2700 12 6 1.9954 -0.7660 1.1376 13 6 1.6315 -2.2426 0.9704 14 1 0.5532 -2.3389 0.8434 15 8 2.2955 -2.7695 -0.1799 16 6 2.0700 -3.0198 2.2132 17 7 1.7200 -4.4375 2.0529 18 6 2.1275 -5.2167 3.2297 19 6 1.7467 -6.6844 3.0263 20 7 2.0418 -7.4410 4.2504 21 6 1.7803 -8.8902 4.0565 22 6 2.6112 -9.5580 5.1809 23 6 3.8833 -8.6780 5.2373 24 6 5.0074 -9.3237 4.4247 25 6 4.3278 -8.4719 6.6867 26 6 3.4729 -7.3338 4.6079 27 1 -0.3633 0.4513 0.9233 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3633 -1.0252 -0.0708 30 1 1.5610 1.9274 0.8309 31 1 3.0797 1.3445 0.1082 32 1 2.9865 4.9180 -0.7771 33 1 1.5612 -0.3872 2.0628 34 1 3.0798 -0.6610 1.1756 35 1 3.2601 -2.7166 -0.1359 36 1 1.5634 -2.6178 3.0906 37 1 3.1483 -2.9235 2.3402 38 1 2.1252 -4.8169 1.2103 39 1 1.6219 -4.8297 4.1144 40 1 3.2063 -5.1359 3.3632 41 1 2.3209 -7.0972 2.1968 42 1 0.6823 -6.7561 2.8025 43 1 0.7198 -9.1097 4.1799 44 1 2.1277 -9.2161 3.0762 45 1 2.0760 -9.5213 6.1298 46 1 2.8612 -10.5856 4.9174 47 1 5.8717 -8.6598 4.4087 48 1 5.2869 -10.2730 4.8817 49 1 4.6644 -9.4984 3.4049 50 1 3.5057 -8.0459 7.2618 51 1 4.6149 -9.4306 7.1186 52 1 5.1796 -7.7922 6.7123 53 1 4.0662 -7.1465 3.7128 54 1 3.6171 -6.5253 5.3246 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905678180.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:32 Heat of formation + Delta-G solvation = -76.271529 kcal Electronic energy + Delta-G solvation = -26275.258929 eV Core-core repulsion = 22666.304805 eV Total energy + Delta-G solvation = -3608.954124 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 313.247 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.59584 -39.62952 -37.64186 -36.57310 -34.86511 -34.62741 -31.88497 -30.72730 -29.26216 -28.53342 -28.20622 -27.25891 -26.20176 -24.72212 -22.91970 -22.68844 -21.92262 -21.68548 -19.95027 -18.57638 -17.59325 -17.30361 -16.95964 -16.71487 -16.68623 -16.21523 -15.86334 -15.69308 -15.24126 -15.18829 -14.83054 -14.76421 -14.46903 -14.24879 -13.96330 -13.89176 -13.78475 -13.47348 -13.35897 -13.16387 -12.81662 -12.70480 -12.57651 -12.57183 -12.52354 -12.39975 -12.36986 -12.13346 -12.03148 -11.96361 -11.63293 -11.60317 -11.51996 -11.42819 -11.38924 -10.73892 -10.61852 -9.44419 -9.39563 -8.97328 -8.21128 -6.31151 1.40841 1.44266 1.52230 2.39884 2.69507 3.10818 3.16861 3.48281 3.56477 3.66619 3.71587 3.88644 3.97120 4.03114 4.15312 4.17619 4.25891 4.32216 4.36331 4.42515 4.45604 4.53061 4.55148 4.60592 4.67164 4.72509 4.73671 4.78597 4.79501 4.84644 4.88782 4.93813 4.95603 5.05450 5.05795 5.09160 5.15202 5.16773 5.16977 5.29440 5.31510 5.33103 5.45750 5.64047 5.89174 5.95440 6.04286 6.07727 6.31210 6.40268 6.62580 6.84448 6.93527 7.38446 8.89614 Molecular weight = 313.25amu Principal moments of inertia in cm(-1) A = 0.035552 B = 0.001741 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.384060 B =16077.672221 C =16321.971960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.540 5.540 3 C 0.207 3.793 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.971 3.029 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.024 3.976 13 C 0.129 3.871 14 H 0.095 0.905 15 O -0.560 6.560 16 C 0.041 3.959 17 N -0.688 5.688 18 C 0.070 3.930 19 C 0.057 3.943 20 N -0.526 5.526 21 C 0.033 3.967 22 C -0.111 4.111 23 C -0.079 4.079 24 C -0.136 4.136 25 C -0.133 4.133 26 C 0.043 3.957 27 H 0.011 0.989 28 H 0.055 0.945 29 H 0.076 0.924 30 H -0.039 1.039 31 H 0.004 0.996 32 H 0.265 0.735 33 H 0.033 0.967 34 H 0.068 0.932 35 H 0.379 0.621 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.348 0.652 39 H 0.071 0.929 40 H 0.029 0.971 41 H 0.034 0.966 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.045 0.955 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.055 0.945 48 H 0.067 0.933 49 H 0.049 0.951 50 H 0.054 0.946 51 H 0.064 0.936 52 H 0.055 0.945 53 H 0.040 0.960 54 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.474 -29.288 13.398 32.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.264 5.264 3 C 0.081 3.919 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.795 3.205 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.194 1.194 12 C -0.105 4.105 13 C 0.069 3.931 14 H 0.113 0.887 15 O -0.365 6.365 16 C -0.089 4.089 17 N -0.321 5.321 18 C -0.060 4.060 19 C -0.072 4.072 20 N -0.251 5.251 21 C -0.094 4.094 22 C -0.148 4.148 23 C -0.079 4.079 24 C -0.194 4.194 25 C -0.191 4.191 26 C -0.085 4.085 27 H 0.030 0.970 28 H 0.074 0.926 29 H 0.095 0.905 30 H -0.021 1.021 31 H 0.022 0.978 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.227 0.773 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.167 0.833 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.063 0.937 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.074 0.926 48 H 0.086 0.914 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.083 0.917 52 H 0.074 0.926 53 H 0.059 0.941 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.122 -29.147 13.434 32.114 hybrid contribution 1.679 1.278 -0.457 2.159 sum 2.800 -27.869 12.978 30.870 Atomic orbital electron populations 1.22234 0.87854 1.01102 0.99672 1.61945 1.07976 1.14893 1.41598 1.19399 0.93644 0.83921 0.94937 1.21445 1.34957 0.97521 1.02410 0.92073 1.25928 0.95006 0.98021 1.00779 1.70078 1.39302 1.11904 1.36199 0.85419 0.78825 0.77147 0.79122 1.19268 1.20711 1.19387 1.22826 1.00244 0.95313 0.92094 1.21779 0.97772 0.88793 0.84733 0.88708 1.86571 1.24059 1.83667 1.42218 1.22470 0.99020 0.88943 0.98475 1.60256 1.64560 1.01797 1.05465 1.21852 0.97653 0.92863 0.93618 1.22112 1.01828 0.92789 0.90452 1.64739 1.19270 1.09076 1.31978 1.23264 1.01175 0.86966 0.98024 1.22652 0.94667 0.98719 0.98807 1.21488 0.95783 0.94160 0.96487 1.21885 0.97352 1.00924 0.99222 1.21820 1.01082 1.02032 0.94128 1.23041 0.88138 0.98019 0.99278 0.97042 0.92602 0.90545 1.02133 0.97768 0.92668 0.94904 0.91341 0.77333 0.90052 0.94083 0.83310 0.91048 0.95260 0.94778 0.90237 0.89775 0.93671 0.90686 0.89760 0.92553 0.91407 0.93188 0.92727 0.91722 0.92566 0.94140 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 9.14 127.69 1.17 2.76 16 2 N -0.54 -23.88 4.70 -927.05 -4.36 -28.24 16 3 C 0.21 11.29 4.72 85.56 0.40 11.69 16 4 C -0.53 -30.49 8.46 25.60 0.22 -30.28 16 5 H 0.06 3.51 7.12 -2.91 -0.02 3.49 16 6 C 0.00 0.03 5.46 84.65 0.46 0.50 16 7 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 8 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 C 0.02 0.85 4.60 86.30 0.40 1.25 16 13 C 0.13 3.60 3.19 30.59 0.10 3.70 16 14 H 0.10 2.86 6.34 -2.39 -0.02 2.84 16 15 O -0.56 -16.23 12.62 -148.98 -1.88 -18.11 16 16 C 0.04 0.91 5.39 86.30 0.47 1.37 16 17 N -0.69 -14.25 6.50 -513.89 -3.34 -17.59 16 18 C 0.07 1.27 5.44 86.30 0.47 1.74 16 19 C 0.06 0.96 5.08 86.30 0.44 1.40 16 20 N -0.53 -8.50 5.36 -883.03 -4.73 -13.23 16 21 C 0.03 0.44 6.55 86.65 0.57 1.00 16 22 C -0.11 -1.18 6.18 31.87 0.20 -0.98 16 23 C -0.08 -0.89 0.97 -51.24 -0.05 -0.94 16 24 C -0.14 -1.34 8.20 71.98 0.59 -0.75 16 25 C -0.13 -1.36 8.24 71.98 0.59 -0.76 16 26 C 0.04 0.63 4.79 86.45 0.41 1.04 16 27 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.06 2.43 6.76 -2.39 -0.02 2.42 16 29 H 0.08 2.63 6.37 -2.39 -0.02 2.61 16 30 H -0.04 -2.30 8.12 -2.38 -0.02 -2.31 16 31 H 0.00 0.25 7.93 -2.39 -0.02 0.23 16 32 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 33 H 0.03 1.12 8.12 -2.39 -0.02 1.10 16 34 H 0.07 2.35 7.93 -2.38 -0.02 2.33 16 35 H 0.38 8.73 9.05 -74.06 -0.67 8.06 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.35 7.08 8.12 -89.69 -0.73 6.35 16 39 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.03 0.52 7.14 -2.39 -0.02 0.50 16 41 H 0.03 0.57 8.00 -2.39 -0.02 0.55 16 42 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.04 0.58 7.94 -2.39 -0.02 0.57 16 45 H 0.07 0.83 7.85 -2.39 -0.02 0.81 16 46 H 0.08 0.70 7.85 -2.39 -0.02 0.68 16 47 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 50 H 0.05 0.62 8.12 -2.39 -0.02 0.60 16 51 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 52 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 53 H 0.04 0.62 6.98 -2.38 -0.02 0.60 16 54 H 0.07 1.13 7.69 -2.39 -0.02 1.12 16 Total: -1.00 -65.97 415.05 -6.12 -72.09 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -0.55 Total: 21.89 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 6.43 Total: -7.26 kcal Atomic # 7 Polarization: -103.46 SS G_CDS: -12.14 Total: -115.60 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -1.88 Total: -18.11 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -65.97 -6.12 -72.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905678180.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.181 kcal (2) G-P(sol) polarization free energy of solvation -65.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds