Wall clock time and date at job start Fri Apr 10 2020 18:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 110.99998 * 2 1 4 4 C 1.50693 * 109.47349 * 66.04631 * 3 2 1 5 5 H 1.08001 * 120.00204 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00161 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99729 * 179.97438 * 6 4 3 8 8 Si 1.86797 * 120.00017 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47020 * 90.00007 * 8 6 4 10 10 H 1.48502 * 109.47211 * 210.00172 * 8 6 4 11 11 H 1.48498 * 109.47394 * 330.00106 * 8 6 4 12 12 C 1.46897 * 110.99950 * 236.04393 * 2 1 3 13 13 C 1.53001 * 109.47485 * 293.95179 * 12 2 1 14 14 H 1.09003 * 109.46548 * 59.99677 * 13 12 2 15 15 O 1.42898 * 109.47209 * 300.00164 * 13 12 2 16 16 C 1.52995 * 109.47271 * 179.97438 * 13 12 2 17 17 N 1.46906 * 109.46978 * 185.00310 * 16 13 12 18 18 C 1.46901 * 110.99793 * 180.02562 * 17 16 13 19 19 C 1.53000 * 109.46769 * 180.02562 * 18 17 16 20 20 N 1.46901 * 109.46769 * 180.02562 * 19 18 17 21 21 C 1.48529 * 111.00334 * 52.60118 * 20 19 18 22 22 C 1.54939 * 103.22773 * 159.72019 * 21 20 19 23 23 C 1.54592 * 102.92065 * 322.58285 * 22 21 20 24 24 C 1.52997 * 110.31133 * 263.04052 * 23 22 21 25 25 C 1.53009 * 110.38923 * 140.91529 * 23 22 21 26 26 C 1.47907 * 110.99770 * 169.99935 * 20 19 18 27 27 H 1.09002 * 109.47184 * 183.95292 * 1 2 3 28 28 H 1.09004 * 109.47058 * 303.95538 * 1 2 3 29 29 H 1.08995 * 109.47346 * 63.95772 * 1 2 3 30 30 H 1.08998 * 109.47267 * 186.04799 * 3 2 1 31 31 H 1.09000 * 109.46947 * 306.04101 * 3 2 1 32 32 H 0.97007 * 119.99751 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47032 * 173.95165 * 12 2 1 34 34 H 1.09001 * 109.47160 * 53.95777 * 12 2 1 35 35 H 0.96694 * 114.00116 * 300.00232 * 15 13 12 36 36 H 1.08995 * 109.46859 * 65.00602 * 16 13 12 37 37 H 1.09002 * 109.47639 * 305.00270 * 16 13 12 38 38 H 1.00899 * 110.99995 * 56.04730 * 17 16 13 39 39 H 1.09002 * 109.47401 * 59.99808 * 18 17 16 40 40 H 1.09001 * 109.46874 * 299.99821 * 18 17 16 41 41 H 1.09001 * 109.47194 * 299.99524 * 19 18 17 42 42 H 1.08992 * 109.47399 * 59.99697 * 19 18 17 43 43 H 1.09002 * 110.66801 * 278.15661 * 21 20 19 44 44 H 1.09002 * 110.66763 * 41.28631 * 21 20 19 45 45 H 1.09000 * 110.72440 * 204.22727 * 22 21 20 46 46 H 1.08995 * 110.87785 * 81.01904 * 22 21 20 47 47 H 1.09005 * 109.47188 * 175.71977 * 24 23 22 48 48 H 1.08995 * 109.47193 * 295.71533 * 24 23 22 49 49 H 1.08991 * 109.46984 * 55.72209 * 24 23 22 50 50 H 1.08996 * 109.46966 * 304.23411 * 25 23 22 51 51 H 1.09005 * 109.46730 * 64.24046 * 25 23 22 52 52 H 1.08997 * 109.47213 * 184.23554 * 25 23 22 53 53 H 1.09001 * 109.91438 * 333.50218 * 26 20 19 54 54 H 1.09000 * 109.91768 * 94.60586 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0739 1.5116 2.0484 6 6 2.0268 3.3495 1.5284 7 7 1.7134 3.9393 2.6614 8 14 2.9999 4.2761 0.2308 9 1 2.0633 4.9797 -0.6818 10 1 3.8863 5.2679 0.8912 11 1 3.8239 3.3175 -0.5485 12 6 1.9954 -0.7660 -1.1375 13 6 1.6315 -2.2427 -0.9703 14 1 0.5472 -2.3475 -0.9322 15 8 2.2009 -2.7392 0.2427 16 6 2.1792 -3.0403 -2.1554 17 7 1.7287 -4.4351 -2.0570 18 6 2.2372 -5.2331 -3.1806 19 6 1.7477 -6.6762 -3.0439 20 7 2.2567 -7.4744 -4.1673 21 6 3.7296 -7.3325 -4.2968 22 6 4.1351 -8.5816 -5.1190 23 6 3.1939 -9.6779 -4.5691 24 6 3.9105 -10.5060 -3.5007 25 6 2.7087 -10.5822 -5.7040 26 6 2.0081 -8.9159 -3.9488 27 1 -0.3634 -1.0252 0.0708 28 1 -0.3633 0.5740 0.8524 29 1 -0.3634 0.4512 -0.9233 30 1 3.0797 1.3444 -0.1083 31 1 1.5611 1.9273 -0.8310 32 1 1.9880 4.8555 2.8234 33 1 3.0797 -0.6611 -1.1756 34 1 1.5611 -0.3873 -2.0628 35 1 3.1652 -2.6771 0.2787 36 1 3.2686 -3.0086 -2.1422 37 1 1.8143 -2.6055 -3.0859 38 1 0.7225 -4.4871 -2.0022 39 1 3.3271 -5.2166 -3.1742 40 1 1.8730 -4.8135 -4.1184 41 1 2.1116 -7.0961 -2.1061 42 1 0.6579 -6.6924 -3.0506 43 1 3.9822 -6.4190 -4.8351 44 1 4.2051 -7.3465 -3.3161 45 1 5.1778 -8.8415 -4.9367 46 1 3.9596 -8.4203 -6.1826 47 1 3.2129 -11.2239 -3.0690 48 1 4.7462 -11.0390 -3.9540 49 1 4.2825 -9.8452 -2.7179 50 1 2.2336 -9.9751 -6.4745 51 1 3.5579 -11.1144 -6.1328 52 1 1.9891 -11.3015 -5.3130 53 1 1.9504 -9.1250 -2.8806 54 1 1.0783 -9.2103 -4.4355 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905678183.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:35 Heat of formation + Delta-G solvation = -71.208473 kcal Electronic energy + Delta-G solvation = -26259.906125 eV Core-core repulsion = 22651.171551 eV Total energy + Delta-G solvation = -3608.734574 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 313.247 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.59674 -39.58492 -37.65506 -36.60028 -34.87093 -34.59355 -31.71281 -30.81025 -29.90324 -28.83205 -28.20325 -27.14911 -25.61730 -24.50716 -23.60962 -22.56686 -21.78423 -21.42290 -19.88605 -19.02756 -17.71441 -17.16437 -16.90339 -16.62486 -16.57185 -16.10655 -15.98144 -15.71888 -15.38101 -15.19336 -14.85650 -14.68227 -14.49334 -14.33375 -14.10579 -14.06595 -13.75584 -13.47547 -13.37578 -13.21101 -12.94582 -12.74578 -12.59007 -12.49362 -12.46330 -12.38273 -12.28227 -12.13316 -11.95931 -11.82217 -11.61414 -11.59338 -11.51078 -11.48620 -11.36419 -10.79599 -10.66588 -9.43450 -9.35830 -8.96968 -8.28166 -6.31906 1.33770 1.36032 1.46890 2.34166 2.69003 3.04221 3.13960 3.46983 3.58683 3.70548 3.74116 3.89664 3.93901 4.04335 4.12801 4.20744 4.31033 4.33244 4.35087 4.42864 4.45762 4.51453 4.57261 4.62686 4.63901 4.66167 4.74794 4.76317 4.81145 4.82900 4.89495 4.90087 4.93433 4.96013 5.00919 5.06483 5.09249 5.12622 5.17019 5.24469 5.30319 5.33509 5.46505 5.53199 5.86151 5.95361 5.99094 6.07651 6.35673 6.39193 6.66623 6.74787 7.05532 7.31591 8.88717 Molecular weight = 313.25amu Principal moments of inertia in cm(-1) A = 0.036565 B = 0.001763 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.569181 B =15879.354350 C =16117.883933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.539 5.539 3 C 0.172 3.828 4 C -0.518 4.518 5 H 0.034 0.966 6 C 0.005 3.995 7 N -0.949 5.949 8 Si 0.951 3.049 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.247 1.247 12 C 0.021 3.979 13 C 0.126 3.874 14 H 0.089 0.911 15 O -0.556 6.556 16 C 0.041 3.959 17 N -0.688 5.688 18 C 0.069 3.931 19 C 0.055 3.945 20 N -0.525 5.525 21 C 0.032 3.968 22 C -0.113 4.113 23 C -0.077 4.077 24 C -0.137 4.137 25 C -0.132 4.132 26 C 0.043 3.957 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.021 0.979 30 H 0.031 0.969 31 H -0.014 1.014 32 H 0.267 0.733 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.378 0.622 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.344 0.656 39 H 0.070 0.930 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.046 0.954 50 H 0.054 0.946 51 H 0.062 0.938 52 H 0.058 0.942 53 H 0.042 0.958 54 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.491 -29.292 -20.859 36.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.263 5.263 3 C 0.044 3.956 4 C -0.556 4.556 5 H 0.053 0.947 6 C -0.192 4.192 7 N -0.590 5.590 8 Si 0.774 3.226 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.171 1.171 12 C -0.108 4.108 13 C 0.066 3.934 14 H 0.106 0.894 15 O -0.361 6.361 16 C -0.089 4.089 17 N -0.320 5.320 18 C -0.061 4.061 19 C -0.073 4.073 20 N -0.249 5.249 21 C -0.096 4.096 22 C -0.151 4.151 23 C -0.078 4.078 24 C -0.194 4.194 25 C -0.190 4.190 26 C -0.085 4.085 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.003 0.997 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.226 0.774 36 H 0.099 0.901 37 H 0.065 0.935 38 H 0.162 0.838 39 H 0.089 0.911 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.060 0.940 45 H 0.099 0.901 46 H 0.094 0.906 47 H 0.078 0.922 48 H 0.085 0.915 49 H 0.066 0.934 50 H 0.074 0.926 51 H 0.081 0.919 52 H 0.077 0.923 53 H 0.061 0.939 54 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.270 -29.478 -20.226 36.004 hybrid contribution 0.204 1.554 -0.653 1.698 sum 4.474 -27.925 -20.879 35.153 Atomic orbital electron populations 1.22197 0.87845 1.01040 0.99639 1.61723 1.08005 1.14352 1.42227 1.19960 0.95279 0.85906 0.94408 1.21287 1.34859 0.97533 1.01956 0.94749 1.25899 0.97029 0.98420 0.97832 1.70067 1.48604 1.13860 1.26451 0.85661 0.79171 0.78667 0.79073 1.19351 1.20648 1.17070 1.22893 1.00854 0.95093 0.91922 1.21760 0.98115 0.89207 0.84298 0.89355 1.86571 1.25960 1.85006 1.38589 1.22517 1.01292 0.88116 0.96974 1.60281 1.16874 1.10161 1.44652 1.21881 1.00160 0.92485 0.91544 1.22138 1.00406 0.93049 0.91756 1.64798 1.13133 1.06874 1.40144 1.23258 0.87695 0.99554 0.99047 1.22633 0.99253 0.93246 0.99942 1.21439 0.94586 0.95504 0.96253 1.21886 1.00457 0.99391 0.97699 1.21818 1.01257 0.98848 0.97047 1.23063 0.99087 0.87188 0.99125 0.90733 0.93696 0.96058 0.95100 0.99671 0.92440 0.90403 0.94022 0.77410 0.90076 0.93523 0.83781 0.91133 0.94649 0.94625 0.90716 0.90004 0.94020 0.90147 0.90634 0.92223 0.91529 0.93449 0.92644 0.91877 0.92264 0.93940 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 9.14 127.69 1.17 2.77 16 2 N -0.54 -22.35 4.62 -927.07 -4.28 -26.63 16 3 C 0.17 8.27 3.79 85.55 0.32 8.60 16 4 C -0.52 -30.61 9.01 25.60 0.23 -30.38 16 5 H 0.03 2.29 7.37 -2.91 -0.02 2.27 16 6 C 0.01 0.31 5.47 84.65 0.46 0.77 16 7 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 8 Si 0.95 44.17 27.47 68.60 1.88 46.06 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.25 -10.55 6.54 99.48 0.65 -9.90 16 12 C 0.02 0.65 4.62 86.30 0.40 1.05 16 13 C 0.13 3.24 3.01 30.59 0.09 3.34 16 14 H 0.09 2.34 6.55 -2.39 -0.02 2.33 16 15 O -0.56 -16.77 13.15 -148.98 -1.96 -18.73 16 16 C 0.04 0.80 5.32 86.30 0.46 1.26 16 17 N -0.69 -13.10 6.45 -513.88 -3.31 -16.41 16 18 C 0.07 1.14 5.34 86.30 0.46 1.60 16 19 C 0.06 0.90 5.29 86.30 0.46 1.35 16 20 N -0.52 -8.14 5.40 -883.00 -4.76 -12.90 16 21 C 0.03 0.44 5.10 86.65 0.44 0.88 16 22 C -0.11 -1.24 6.16 31.80 0.20 -1.05 16 23 C -0.08 -0.83 0.97 -51.30 -0.05 -0.88 16 24 C -0.14 -1.33 8.21 71.98 0.59 -0.74 16 25 C -0.13 -1.19 8.24 71.99 0.59 -0.60 16 26 C 0.04 0.59 6.02 86.45 0.52 1.11 16 27 H 0.07 2.51 6.47 -2.39 -0.02 2.49 16 28 H 0.04 2.05 6.76 -2.39 -0.02 2.03 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.03 1.46 6.99 -2.39 -0.02 1.45 16 31 H -0.01 -0.68 7.55 -2.39 -0.02 -0.69 16 32 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 33 H 0.08 2.25 7.93 -2.39 -0.02 2.23 16 34 H 0.04 1.18 8.12 -2.39 -0.02 1.16 16 35 H 0.38 9.44 9.05 -74.06 -0.67 8.77 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.34 6.25 8.73 -89.69 -0.78 5.47 16 39 H 0.07 1.19 6.79 -2.39 -0.02 1.17 16 40 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.04 0.65 7.81 -2.39 -0.02 0.64 16 42 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.08 1.10 7.66 -2.39 -0.02 1.08 16 44 H 0.04 0.61 8.00 -2.39 -0.02 0.59 16 45 H 0.08 0.75 7.85 -2.39 -0.02 0.73 16 46 H 0.07 0.84 7.85 -2.39 -0.02 0.82 16 47 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 48 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 50 H 0.05 0.55 8.11 -2.39 -0.02 0.54 16 51 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 52 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 53 H 0.04 0.61 7.11 -2.39 -0.02 0.59 16 54 H 0.08 1.06 7.69 -2.39 -0.02 1.04 16 Total: -1.00 -69.31 411.62 -6.45 -75.76 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: -0.66 Total: 23.70 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 6.35 Total: -10.93 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -12.06 Total: -115.86 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -1.96 Total: -18.73 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.06 kcal Total: -69.31 -6.45 -75.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905678183.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.551 kcal (2) G-P(sol) polarization free energy of solvation -69.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds