Wall clock time and date at job start Fri Apr 10 2020 18:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47117 * 2 1 4 4 C 1.52999 * 109.47117 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47428 * 304.99732 * 4 3 2 6 6 O 1.42897 * 109.47461 * 64.99641 * 4 3 2 7 7 C 1.53002 * 109.47173 * 185.00172 * 4 3 2 8 8 C 1.53004 * 109.47044 * 174.99689 * 7 4 3 9 9 N 1.46502 * 109.46791 * 179.97438 * 8 7 4 10 10 C 1.34778 * 119.99570 * 180.02562 * 9 8 7 11 11 O 1.21583 * 120.00078 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99836 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00185 * 179.97438 * 12 10 9 14 14 C 1.53033 * 109.46407 * 275.02757 * 13 12 10 15 15 C 1.53191 * 109.31439 * 178.59956 * 14 13 12 16 16 N 1.46928 * 108.76587 * 54.65756 * 15 14 13 17 17 C 1.36933 * 120.63236 * 126.40498 * 16 15 14 18 18 H 1.07999 * 120.00040 * 331.83091 * 17 16 15 19 19 C 1.38810 * 120.00125 * 151.82419 * 17 16 15 20 20 N 1.31619 * 119.99986 * 343.07337 * 19 17 16 21 21 Si 1.86802 * 120.00064 * 163.06665 * 19 17 16 22 22 H 1.48497 * 109.46861 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46828 * 120.00314 * 21 19 17 24 24 H 1.48497 * 109.47170 * 240.00443 * 21 19 17 25 25 C 1.46927 * 118.73536 * 306.38325 * 16 15 14 26 26 C 1.53042 * 109.46143 * 154.97225 * 13 12 10 27 27 H 1.08999 * 109.47208 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47294 * 299.99997 * 1 2 3 29 29 H 1.09001 * 109.46731 * 60.00019 * 1 2 3 30 30 H 1.08994 * 109.47294 * 240.00003 * 2 1 3 31 31 H 1.09007 * 109.47161 * 119.99953 * 2 1 3 32 32 H 1.09003 * 109.46864 * 59.99987 * 3 2 1 33 33 H 1.09001 * 109.47304 * 299.99629 * 3 2 1 34 34 H 0.96701 * 113.99487 * 59.99889 * 6 4 3 35 35 H 1.09001 * 109.47013 * 54.99960 * 7 4 3 36 36 H 1.08998 * 109.46882 * 294.99483 * 7 4 3 37 37 H 1.09001 * 109.46995 * 60.00260 * 8 7 4 38 38 H 1.08991 * 109.47332 * 299.99992 * 8 7 4 39 39 H 0.96998 * 119.99790 * 359.72682 * 9 8 7 40 40 H 0.97008 * 119.99836 * 359.97438 * 12 10 9 41 41 H 1.09005 * 109.45839 * 35.00388 * 13 12 10 42 42 H 1.09000 * 109.50044 * 298.56452 * 14 13 12 43 43 H 1.09001 * 109.50021 * 58.66131 * 14 13 12 44 44 H 1.09001 * 109.59960 * 294.86726 * 15 14 13 45 45 H 1.09004 * 109.70059 * 174.50709 * 15 14 13 46 46 H 0.97004 * 119.99619 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.58717 * 293.81675 * 25 16 15 48 48 H 1.08999 * 109.69953 * 173.46638 * 25 16 15 49 49 H 1.09004 * 109.49801 * 301.34101 * 26 13 12 50 50 H 1.09001 * 109.49706 * 61.43622 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 8 4.0469 0.8729 -1.2200 7 6 4.0800 2.8796 0.1264 8 6 5.6048 2.8704 0.2525 9 7 6.0930 4.2464 0.3723 10 6 7.4140 4.4844 0.4952 11 8 8.2002 3.5571 0.5071 12 7 7.8632 5.7502 0.6060 13 6 9.2989 6.0089 0.7401 14 6 9.7028 5.8917 2.2115 15 6 11.2106 6.1283 2.3434 16 7 11.5418 7.4208 1.7281 17 6 12.2319 8.3719 2.4313 18 1 12.1529 8.4108 3.5077 19 6 13.0329 9.2859 1.7607 20 7 13.3996 9.0523 0.5183 21 14 13.5902 10.8474 2.6212 22 1 13.0466 10.8720 4.0029 23 1 15.0740 10.8815 2.6728 24 1 13.0936 12.0295 1.8723 25 6 11.1190 7.6732 0.3438 26 6 9.6123 7.4189 0.2344 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.7619 1.3472 -2.0131 35 1 3.6449 3.3433 1.0118 36 1 3.7920 3.4460 -0.7592 37 1 6.0398 2.4067 -0.6328 38 1 5.8927 2.3039 1.1380 39 1 5.4661 4.9864 0.3589 40 1 7.2358 6.4901 0.5969 41 1 9.8557 5.2799 0.1514 42 1 9.1648 6.6373 2.7970 43 1 9.4578 4.8948 2.5778 44 1 11.7517 5.3314 1.8333 45 1 11.4895 6.1430 3.3971 46 1 13.9591 9.6913 0.0496 47 1 11.6527 7.0023 -0.3294 48 1 11.3355 8.7074 0.0763 49 1 9.3029 7.5091 -0.8069 50 1 9.0752 8.1500 0.8387 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917313779.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:39 Heat of formation + Delta-G solvation = -87.891873 kcal Electronic energy + Delta-G solvation = -26037.538749 eV Core-core repulsion = 22292.247634 eV Total energy + Delta-G solvation = -3745.291115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -39.95537 -38.72726 -37.44607 -35.11981 -34.54604 -34.27548 -32.27713 -31.40609 -30.05402 -29.34132 -28.10972 -25.09853 -24.02148 -22.25118 -21.97338 -21.89209 -21.47263 -20.50816 -19.38912 -18.08331 -16.86358 -16.80927 -16.39841 -16.24072 -15.53828 -15.08149 -14.86085 -14.65212 -14.17275 -13.94763 -13.85714 -13.80258 -13.59928 -13.47847 -12.94488 -12.62270 -12.40950 -12.36913 -12.29582 -12.17656 -11.63386 -11.54573 -11.41356 -11.17024 -11.10220 -11.09844 -10.81313 -10.71596 -10.45054 -10.34856 -10.22823 -10.00623 -9.94047 -9.71368 -9.50036 -9.11653 -8.55956 -8.40844 -6.65777 -5.77665 -3.19662 2.82067 3.37731 3.43235 3.45739 3.48087 3.90551 4.17446 4.35711 4.48038 4.51084 4.55131 4.66891 4.77113 4.89065 5.00156 5.16045 5.25137 5.31996 5.36778 5.41137 5.44884 5.47727 5.54436 5.63427 5.65349 5.70586 5.82393 5.86285 5.88264 5.94314 6.12336 6.33197 6.40287 6.46971 6.53890 6.62053 6.65400 6.84378 6.95222 7.03151 7.15878 7.25747 7.34948 7.64696 7.81562 8.19928 8.46678 8.81584 9.22917 9.86246 10.43622 11.31261 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.048324 B = 0.001834 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.284578 B =15262.647113 C =15307.171434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.151 4.151 4 C 0.109 3.891 5 H 0.102 0.898 6 O -0.557 6.557 7 C -0.164 4.164 8 C 0.143 3.857 9 N -0.755 5.755 10 C 0.700 3.300 11 O -0.590 6.590 12 N -0.740 5.740 13 C 0.168 3.832 14 C -0.139 4.139 15 C 0.147 3.853 16 N -0.593 5.593 17 C -0.251 4.251 18 H 0.066 0.934 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.175 3.825 26 C -0.146 4.146 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.374 0.626 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.392 0.608 40 H 0.390 0.610 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.021 0.979 45 H 0.055 0.945 46 H 0.253 0.747 47 H 0.021 0.979 48 H 0.091 0.909 49 H 0.053 0.947 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.102 -11.996 -2.814 28.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.189 4.189 4 C 0.050 3.950 5 H 0.120 0.880 6 O -0.363 6.363 7 C -0.202 4.202 8 C 0.018 3.982 9 N -0.411 5.411 10 C 0.400 3.600 11 O -0.468 6.468 12 N -0.393 5.393 13 C 0.065 3.935 14 C -0.179 4.179 15 C 0.020 3.980 16 N -0.316 5.316 17 C -0.380 4.380 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.048 3.952 26 C -0.186 4.186 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.221 0.779 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.225 0.775 40 H 0.223 0.777 41 H 0.099 0.901 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.039 0.961 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.039 0.961 48 H 0.109 0.891 49 H 0.072 0.928 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.944 -13.197 -2.474 28.329 hybrid contribution -0.673 2.033 0.046 2.142 sum -25.617 -11.164 -2.428 28.050 Atomic orbital electron populations 1.21789 0.95973 1.01675 1.01653 1.21471 0.95515 0.96301 1.02723 1.22333 0.95780 0.97912 1.02852 1.21891 0.92363 0.92633 0.88158 0.88029 1.86632 1.76970 1.57091 1.15561 1.22539 0.95904 0.98405 1.03344 1.21058 0.92256 0.82287 1.02577 1.45167 1.06189 1.08850 1.80919 1.16032 0.82154 0.83949 0.77874 1.90926 1.54824 1.42992 1.58012 1.45547 1.09654 1.05594 1.78538 1.20902 0.77728 0.97874 0.97036 1.22384 0.99601 1.00272 0.95680 1.20884 0.91154 0.88647 0.97296 1.44098 1.63760 1.11949 1.11747 1.19239 1.20163 1.07425 0.91205 0.91617 1.25052 0.97226 1.00601 0.96837 1.70041 1.37847 1.35346 1.11542 0.86231 0.78046 0.83558 0.78998 1.20284 1.21737 1.21612 1.20736 0.86652 1.02166 0.85653 1.22540 1.02424 0.94345 0.99266 0.92727 0.92855 0.92865 0.91278 0.91980 0.90984 0.91582 0.77927 0.90367 0.90961 0.91082 0.91844 0.77503 0.77720 0.90103 0.92514 0.92730 0.96142 0.92610 0.93682 0.96085 0.89068 0.92813 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.65 5.83 -26.73 -0.16 -0.81 16 3 C -0.15 -0.70 4.89 -26.73 -0.13 -0.83 16 4 C 0.11 0.65 2.96 -26.73 -0.08 0.57 16 5 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 6 O -0.56 -4.08 12.41 -35.23 -0.44 -4.52 16 7 C -0.16 -0.95 5.01 -26.73 -0.13 -1.08 16 8 C 0.14 1.41 5.57 -4.04 -0.02 1.38 16 9 N -0.75 -8.12 5.56 -65.23 -0.36 -8.49 16 10 C 0.70 10.86 8.53 -86.92 -0.74 10.12 16 11 O -0.59 -11.91 16.01 5.29 0.08 -11.83 16 12 N -0.74 -10.75 5.08 -58.64 -0.30 -11.05 16 13 C 0.17 3.04 2.42 -67.89 -0.16 2.87 16 14 C -0.14 -2.63 5.65 -26.62 -0.15 -2.78 16 15 C 0.15 3.25 6.52 -3.71 -0.02 3.22 16 16 N -0.59 -14.99 2.99 -172.32 -0.52 -15.51 16 17 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 18 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 19 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 20 N -0.90 -26.21 11.19 55.49 0.62 -25.59 16 21 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 25 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 26 C -0.15 -2.71 5.55 -26.61 -0.15 -2.85 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.42 7.82 -51.93 -0.41 0.01 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.37 1.53 9.05 45.56 0.41 1.94 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.83 7.82 -51.93 -0.41 0.43 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.39 2.97 8.49 -40.82 -0.35 2.62 16 40 H 0.39 4.45 8.62 -40.82 -0.35 4.10 16 41 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 46 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.09 2.39 6.07 -51.93 -0.31 2.08 16 49 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 396.63 15.07 5.98 5.98 Total: -1.00 -33.66 396.63 -10.12 -43.78 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -8.53 Total: 4.14 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -1.63 Total: 6.48 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.56 Total: -60.63 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.35 Total: -16.35 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.66 -10.12 -43.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917313779.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.112 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds