Wall clock time and date at job start Fri Apr 10 2020 18:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47117 * 2 1 4 4 C 1.52999 * 109.47117 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47428 * 304.99732 * 4 3 2 6 6 O 1.42897 * 109.47461 * 64.99641 * 4 3 2 7 7 C 1.53002 * 109.47173 * 185.00172 * 4 3 2 8 8 C 1.53004 * 109.47044 * 174.99689 * 7 4 3 9 9 N 1.46502 * 109.46791 * 179.97438 * 8 7 4 10 10 C 1.34778 * 119.99570 * 180.02562 * 9 8 7 11 11 O 1.21583 * 120.00078 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99836 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00185 * 179.97438 * 12 10 9 14 14 C 1.53033 * 109.46407 * 275.02757 * 13 12 10 15 15 C 1.53191 * 109.31439 * 178.59956 * 14 13 12 16 16 N 1.46928 * 108.76587 * 54.65756 * 15 14 13 17 17 C 1.36933 * 120.63236 * 126.40498 * 16 15 14 18 18 H 1.07999 * 120.00040 * 331.83091 * 17 16 15 19 19 C 1.38810 * 120.00125 * 151.82419 * 17 16 15 20 20 N 1.31619 * 119.99986 * 343.07337 * 19 17 16 21 21 Si 1.86802 * 120.00064 * 163.06665 * 19 17 16 22 22 H 1.48497 * 109.46861 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46828 * 120.00314 * 21 19 17 24 24 H 1.48497 * 109.47170 * 240.00443 * 21 19 17 25 25 C 1.46927 * 118.73536 * 306.38325 * 16 15 14 26 26 C 1.53042 * 109.46143 * 154.97225 * 13 12 10 27 27 H 1.08999 * 109.47208 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47294 * 299.99997 * 1 2 3 29 29 H 1.09001 * 109.46731 * 60.00019 * 1 2 3 30 30 H 1.08994 * 109.47294 * 240.00003 * 2 1 3 31 31 H 1.09007 * 109.47161 * 119.99953 * 2 1 3 32 32 H 1.09003 * 109.46864 * 59.99987 * 3 2 1 33 33 H 1.09001 * 109.47304 * 299.99629 * 3 2 1 34 34 H 0.96701 * 113.99487 * 59.99889 * 6 4 3 35 35 H 1.09001 * 109.47013 * 54.99960 * 7 4 3 36 36 H 1.08998 * 109.46882 * 294.99483 * 7 4 3 37 37 H 1.09001 * 109.46995 * 60.00260 * 8 7 4 38 38 H 1.08991 * 109.47332 * 299.99992 * 8 7 4 39 39 H 0.96998 * 119.99790 * 359.72682 * 9 8 7 40 40 H 0.97008 * 119.99836 * 359.97438 * 12 10 9 41 41 H 1.09005 * 109.45839 * 35.00388 * 13 12 10 42 42 H 1.09000 * 109.50044 * 298.56452 * 14 13 12 43 43 H 1.09001 * 109.50021 * 58.66131 * 14 13 12 44 44 H 1.09001 * 109.59960 * 294.86726 * 15 14 13 45 45 H 1.09004 * 109.70059 * 174.50709 * 15 14 13 46 46 H 0.97004 * 119.99619 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.58717 * 293.81675 * 25 16 15 48 48 H 1.08999 * 109.69953 * 173.46638 * 25 16 15 49 49 H 1.09004 * 109.49801 * 301.34101 * 26 13 12 50 50 H 1.09001 * 109.49706 * 61.43622 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 8 4.0469 0.8729 -1.2200 7 6 4.0800 2.8796 0.1264 8 6 5.6048 2.8704 0.2525 9 7 6.0930 4.2464 0.3723 10 6 7.4140 4.4844 0.4952 11 8 8.2002 3.5571 0.5071 12 7 7.8632 5.7502 0.6060 13 6 9.2989 6.0089 0.7401 14 6 9.7028 5.8917 2.2115 15 6 11.2106 6.1283 2.3434 16 7 11.5418 7.4208 1.7281 17 6 12.2319 8.3719 2.4313 18 1 12.1529 8.4108 3.5077 19 6 13.0329 9.2859 1.7607 20 7 13.3996 9.0523 0.5183 21 14 13.5902 10.8474 2.6212 22 1 13.0466 10.8720 4.0029 23 1 15.0740 10.8815 2.6728 24 1 13.0936 12.0295 1.8723 25 6 11.1190 7.6732 0.3438 26 6 9.6123 7.4189 0.2344 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.7619 1.3472 -2.0131 35 1 3.6449 3.3433 1.0118 36 1 3.7920 3.4460 -0.7592 37 1 6.0398 2.4067 -0.6328 38 1 5.8927 2.3039 1.1380 39 1 5.4661 4.9864 0.3589 40 1 7.2358 6.4901 0.5969 41 1 9.8557 5.2799 0.1514 42 1 9.1648 6.6373 2.7970 43 1 9.4578 4.8948 2.5778 44 1 11.7517 5.3314 1.8333 45 1 11.4895 6.1430 3.3971 46 1 13.9591 9.6913 0.0496 47 1 11.6527 7.0023 -0.3294 48 1 11.3355 8.7074 0.0763 49 1 9.3029 7.5091 -0.8069 50 1 9.0752 8.1500 0.8387 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917313779.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:38 Heat of formation + Delta-G solvation = -112.915537 kcal Electronic energy + Delta-G solvation = -26038.623857 eV Core-core repulsion = 22292.247634 eV Total energy + Delta-G solvation = -3746.376222 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.19434 -39.40642 -38.93807 -36.24375 -35.78429 -34.98216 -33.94783 -32.41328 -31.67593 -30.95451 -28.78415 -26.86401 -24.90196 -23.92450 -23.50763 -22.48153 -21.99278 -21.73353 -21.03983 -19.39066 -18.59716 -17.49847 -17.36544 -16.96855 -16.82327 -16.41827 -16.01200 -15.67766 -15.46066 -15.34632 -15.15216 -14.79389 -14.70639 -14.53594 -14.26378 -14.13709 -14.01433 -13.20649 -13.03370 -12.99332 -12.76578 -12.62364 -12.62092 -12.51011 -12.25638 -12.18202 -12.00578 -11.98370 -11.86393 -11.61704 -11.55126 -11.49137 -11.41110 -11.24690 -10.72897 -10.56300 -10.29999 -9.71442 -8.70532 -7.87295 -5.33189 1.48193 1.50067 1.61023 1.72088 2.19053 2.52545 3.23428 3.31297 3.53826 3.67136 3.77667 3.90545 3.96910 4.07543 4.10548 4.19963 4.27594 4.35189 4.43251 4.46983 4.54967 4.65724 4.70619 4.75345 4.82401 4.85622 4.87281 4.99384 5.01361 5.04678 5.07305 5.13215 5.16675 5.19557 5.29230 5.30127 5.43772 5.47165 5.49877 5.53026 5.61669 5.65455 5.71035 6.07783 6.39529 6.92040 7.14938 7.17060 7.64030 7.84169 8.37632 9.20031 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.048324 B = 0.001834 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.284578 B =15262.647113 C =15307.171434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.143 4.143 4 C 0.110 3.890 5 H 0.089 0.911 6 O -0.579 6.579 7 C -0.148 4.148 8 C 0.142 3.858 9 N -0.732 5.732 10 C 0.696 3.304 11 O -0.641 6.641 12 N -0.726 5.726 13 C 0.180 3.820 14 C -0.123 4.123 15 C 0.144 3.856 16 N -0.608 5.608 17 C -0.263 4.263 18 H 0.068 0.932 19 C -0.049 4.049 20 N -0.936 5.936 21 Si 0.970 3.030 22 H -0.266 1.266 23 H -0.295 1.295 24 H -0.287 1.287 25 C 0.178 3.822 26 C -0.126 4.126 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.387 0.613 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.413 0.587 40 H 0.410 0.590 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.005 0.995 45 H 0.058 0.942 46 H 0.251 0.749 47 H -0.007 1.007 48 H 0.064 0.936 49 H 0.076 0.924 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.001 -10.874 -2.287 31.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.180 4.180 4 C 0.050 3.950 5 H 0.106 0.894 6 O -0.387 6.387 7 C -0.186 4.186 8 C 0.018 3.982 9 N -0.389 5.389 10 C 0.396 3.604 11 O -0.522 6.522 12 N -0.380 5.380 13 C 0.075 3.925 14 C -0.163 4.163 15 C 0.018 3.982 16 N -0.332 5.332 17 C -0.394 4.394 18 H 0.085 0.915 19 C -0.245 4.245 20 N -0.582 5.582 21 Si 0.798 3.202 22 H -0.191 1.191 23 H -0.222 1.222 24 H -0.214 1.214 25 C 0.052 3.948 26 C -0.166 4.166 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.236 0.764 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.249 0.751 40 H 0.247 0.753 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.023 0.977 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.011 0.989 48 H 0.083 0.917 49 H 0.095 0.905 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -27.938 -12.055 -1.947 30.490 hybrid contribution 0.244 1.579 -0.135 1.604 sum -27.695 -10.475 -2.081 29.683 Atomic orbital electron populations 1.21776 0.95357 1.01756 1.02056 1.21468 0.96043 0.96798 1.01874 1.22254 0.94409 0.97489 1.03873 1.21885 0.93312 0.92398 0.87404 0.89351 1.86604 1.77494 1.57998 1.16604 1.22440 0.92406 0.98669 1.05066 1.21108 0.95036 0.81256 1.00789 1.44965 1.04727 1.10088 1.79102 1.16231 0.83238 0.83358 0.77605 1.90903 1.56579 1.44535 1.60189 1.45109 1.08426 1.06204 1.78301 1.20480 0.79558 0.96650 0.95829 1.22173 0.97052 1.00553 0.96538 1.20970 0.93332 0.86973 0.96945 1.44348 1.63964 1.12725 1.12136 1.19566 1.20193 1.07991 0.91601 0.91458 1.25824 0.97616 1.03474 0.97568 1.70198 1.38730 1.36255 1.13014 0.85176 0.77036 0.79610 0.78407 1.19060 1.22183 1.21354 1.20569 0.89912 0.99773 0.84545 1.22249 0.98425 0.94841 1.01095 0.92897 0.92421 0.92430 0.92367 0.92680 0.89998 0.90404 0.76406 0.88608 0.89040 0.93202 0.93585 0.75079 0.75326 0.92940 0.91416 0.92594 0.97681 0.92380 0.94016 0.98874 0.91740 0.90505 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 71.98 0.71 -0.48 16 2 C -0.12 -1.18 5.83 30.59 0.18 -1.00 16 3 C -0.14 -0.99 4.89 30.59 0.15 -0.84 16 4 C 0.11 1.13 2.96 30.59 0.09 1.22 16 5 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 6 O -0.58 -7.95 12.41 -148.98 -1.85 -9.80 16 7 C -0.15 -1.30 5.01 30.60 0.15 -1.15 16 8 C 0.14 2.62 5.57 86.38 0.48 3.10 16 9 N -0.73 -14.03 5.56 -478.54 -2.66 -16.69 16 10 C 0.70 20.57 8.53 179.05 1.53 22.10 16 11 O -0.64 -25.93 16.01 -3.98 -0.06 -26.00 16 12 N -0.73 -19.43 5.08 -457.70 -2.33 -21.76 16 13 C 0.18 6.33 2.42 45.02 0.11 6.43 16 14 C -0.12 -4.54 5.65 30.67 0.17 -4.37 16 15 C 0.14 6.42 6.52 86.36 0.56 6.98 16 16 N -0.61 -31.10 2.99 -699.10 -2.09 -33.19 16 17 C -0.26 -14.57 9.58 84.03 0.81 -13.76 16 18 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 19 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 20 N -0.94 -55.45 11.19 21.65 0.24 -55.20 16 21 Si 0.97 44.58 29.59 68.60 2.03 46.61 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 25 C 0.18 8.60 5.30 86.36 0.46 9.06 16 26 C -0.13 -4.52 5.55 30.67 0.17 -4.35 16 27 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.67 7.82 -2.39 -0.02 0.66 16 31 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.39 2.59 9.05 -74.06 -0.67 1.92 16 35 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.05 1.15 7.82 -2.39 -0.02 1.13 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.41 4.67 8.49 -92.71 -0.79 3.88 16 40 H 0.41 7.85 8.62 -92.70 -0.80 7.05 16 41 H 0.05 2.18 7.58 -2.38 -0.02 2.16 16 42 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 45 H 0.06 2.51 7.93 -2.38 -0.02 2.49 16 46 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 47 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 48 H 0.06 3.46 6.07 -2.39 -0.01 3.44 16 49 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 50 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -74.88 396.63 -2.06 -76.94 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -1.33 Total: 18.48 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 5.99 Total: 20.61 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -6.84 Total: -126.84 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -1.91 Total: -35.80 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -74.88 -2.06 -76.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917313779.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.975 kcal (2) G-P(sol) polarization free energy of solvation -74.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds