Wall clock time and date at job start Fri Apr 10 2020 18:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47014 * 110.99650 * 2 1 4 4 C 1.53096 * 109.25557 * 182.39199 * 3 2 1 5 5 O 1.43019 * 109.26047 * 303.14856 * 4 3 2 6 6 C 1.43112 * 113.75673 * 58.67223 * 5 4 3 7 7 H 1.08994 * 109.50187 * 61.26050 * 6 5 4 8 8 C 1.50703 * 109.55860 * 181.41804 * 6 5 4 9 9 O 1.21281 * 120.00470 * 4.75643 * 8 6 5 10 10 N 1.34785 * 119.99493 * 184.75770 * 8 6 5 11 11 C 1.46498 * 119.99533 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.46872 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.51118 * 304.89827 * 12 11 10 14 14 C 1.53293 * 109.51209 * 184.74206 * 12 11 10 15 15 N 1.47153 * 108.38640 * 187.77224 * 14 12 11 16 16 C 1.36932 * 120.98630 * 230.56106 * 15 14 12 17 17 H 1.08000 * 120.00272 * 26.21624 * 16 15 14 18 18 C 1.38812 * 120.00022 * 206.21897 * 16 15 14 19 19 N 1.31621 * 120.00350 * 16.90763 * 18 16 15 20 20 Si 1.86811 * 119.99961 * 196.91088 * 18 16 15 21 21 H 1.48499 * 109.46802 * 59.99698 * 20 18 16 22 22 H 1.48497 * 109.47000 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46768 * 299.99943 * 20 18 16 24 24 C 1.47153 * 118.03409 * 50.53798 * 15 14 12 25 25 C 1.53302 * 108.38390 * 309.46731 * 24 15 14 26 26 O 1.42957 * 109.22414 * 52.30120 * 25 24 15 27 27 C 1.47012 * 110.99964 * 123.63134 * 2 1 3 28 28 H 1.08997 * 109.46906 * 296.36547 * 1 2 3 29 29 H 1.08997 * 109.47074 * 56.36872 * 1 2 3 30 30 H 1.09000 * 109.47102 * 176.37026 * 1 2 3 31 31 H 1.09002 * 109.50788 * 302.31907 * 3 2 1 32 32 H 1.08994 * 109.50995 * 62.45533 * 3 2 1 33 33 H 1.09009 * 109.50619 * 63.08331 * 4 3 2 34 34 H 1.09001 * 109.51031 * 183.16871 * 4 3 2 35 35 H 0.96998 * 120.00207 * 359.97438 * 10 8 6 36 36 H 1.09003 * 109.47424 * 299.99467 * 11 10 8 37 37 H 1.08997 * 109.47822 * 59.99811 * 11 10 8 38 38 H 1.08995 * 109.68419 * 307.49716 * 14 12 11 39 39 H 1.08998 * 109.68096 * 68.05559 * 14 12 11 40 40 H 0.96996 * 119.99986 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.68683 * 189.74188 * 24 15 14 42 42 H 1.09008 * 109.68204 * 69.18540 * 24 15 14 43 43 H 1.09004 * 109.50907 * 292.37430 * 25 24 15 44 44 H 1.08996 * 109.51022 * 172.22404 * 25 24 15 45 45 H 1.09007 * 109.50708 * 297.54148 * 27 2 1 46 46 H 1.08998 * 109.50994 * 57.63072 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3265 -0.0603 5 8 4.0175 0.5575 1.0404 6 6 3.5250 -0.7858 1.0714 7 1 3.8385 -1.3093 0.1683 8 6 4.0733 -1.4963 2.2820 9 8 4.7429 -0.8887 3.0904 10 7 3.8197 -2.8072 2.4664 11 6 4.3523 -3.4978 3.6435 12 6 3.9210 -4.9654 3.6123 13 1 2.8357 -5.0242 3.5301 14 6 4.3765 -5.6605 4.9004 15 7 4.1183 -7.1029 4.7658 16 6 3.4450 -7.7923 5.7387 17 1 2.7457 -7.2768 6.3802 18 6 3.6614 -9.1539 5.9004 19 7 4.7256 -9.7187 5.3704 20 14 2.4421 -10.1848 6.8702 21 1 1.1064 -10.1077 6.2261 22 1 2.8983 -11.5977 6.8954 23 1 2.3522 -9.6682 8.2596 24 6 4.6045 -7.7825 3.5546 25 6 4.1379 -6.9840 2.3319 26 8 4.5208 -5.6157 2.4892 27 6 1.9959 -0.7601 1.1427 28 1 -0.3633 0.4564 0.9207 29 1 -0.3633 0.5692 -0.8556 30 1 -0.3633 -1.0256 -0.0651 31 1 1.6134 1.9092 -0.8683 32 1 1.6827 1.8826 0.9109 33 1 3.8385 0.8643 -0.9965 34 1 3.9221 2.3399 -0.0038 35 1 3.2839 -3.2931 1.8201 36 1 5.4407 -3.4385 3.6381 37 1 3.9672 -3.0255 4.5472 38 1 5.4425 -5.4909 5.0518 39 1 3.8173 -5.2651 5.7484 40 1 4.8766 -10.6702 5.4832 41 1 4.1963 -8.7922 3.5111 42 1 5.6935 -7.8265 3.5704 43 1 3.0534 -7.0510 2.2456 44 1 4.6012 -7.3907 1.4331 45 1 1.6828 -0.2841 2.0720 46 1 1.6128 -1.7800 1.1092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035326273.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:56 Heat of formation + Delta-G solvation = -111.630748 kcal Electronic energy + Delta-G solvation = -26836.047837 eV Core-core repulsion = 22953.894233 eV Total energy + Delta-G solvation = -3882.153604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.46269 -40.29776 -39.57023 -36.80757 -36.46523 -35.78380 -33.49692 -32.96456 -31.92464 -29.89207 -29.14443 -27.36581 -25.78389 -25.10702 -24.91162 -23.36771 -22.05715 -21.57880 -21.10255 -18.95564 -18.56727 -17.89278 -17.51931 -17.06065 -16.94330 -16.58540 -16.50650 -16.11529 -16.01636 -15.82134 -15.48414 -15.30368 -15.05392 -14.93759 -14.67675 -14.52657 -14.11968 -13.70211 -13.30925 -13.22781 -13.01138 -12.91621 -12.80401 -12.66091 -12.53453 -12.43248 -12.19100 -12.09535 -11.87676 -11.78997 -11.33761 -10.92286 -10.80275 -10.76816 -10.53366 -10.19767 -9.51457 -8.75970 -7.91396 -5.38934 1.44230 1.47491 1.49150 1.56370 1.73397 2.47531 2.69669 2.76822 3.01472 3.23712 3.48303 3.61149 3.69692 3.89594 3.96610 3.97936 4.06806 4.14242 4.25397 4.30340 4.47303 4.48885 4.52423 4.56641 4.61586 4.61857 4.65412 4.72075 4.76682 4.79136 4.90646 4.91206 5.02104 5.05960 5.24611 5.29494 5.55569 5.61373 5.78176 5.88213 5.98479 6.25517 6.33068 6.46629 7.05954 7.12111 7.74079 8.27565 9.14534 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.025099 B = 0.002579 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.297341 B =10853.162744 C =11225.222888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.544 5.544 3 C 0.015 3.985 4 C 0.056 3.944 5 O -0.390 6.390 6 C 0.084 3.916 7 H 0.111 0.889 8 C 0.519 3.481 9 O -0.570 6.570 10 N -0.703 5.703 11 C 0.141 3.859 12 C 0.081 3.919 13 H 0.074 0.926 14 C 0.116 3.884 15 N -0.613 5.613 16 C -0.268 4.268 17 H 0.073 0.927 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.972 3.028 21 H -0.274 1.274 22 H -0.295 1.295 23 H -0.277 1.277 24 C 0.142 3.858 25 C 0.055 3.945 26 O -0.389 6.389 27 C 0.034 3.966 28 H 0.026 0.974 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.417 0.583 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.016 0.984 39 H 0.073 0.927 40 H 0.252 0.748 41 H 0.068 0.932 42 H -0.003 1.003 43 H 0.054 0.946 44 H 0.109 0.891 45 H 0.035 0.965 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.451 19.134 -14.925 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.269 5.269 3 C -0.113 4.113 4 C -0.020 4.020 5 O -0.309 6.309 6 C 0.023 3.977 7 H 0.129 0.871 8 C 0.304 3.696 9 O -0.448 6.448 10 N -0.356 5.356 11 C 0.017 3.983 12 C 0.021 3.979 13 H 0.092 0.908 14 C -0.011 4.011 15 N -0.337 5.337 16 C -0.397 4.397 17 H 0.091 0.909 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.800 3.200 21 H -0.200 1.200 22 H -0.221 1.221 23 H -0.202 1.202 24 C 0.016 3.984 25 C -0.023 4.023 26 O -0.309 6.309 27 C -0.095 4.095 28 H 0.044 0.956 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.131 0.869 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.137 0.863 35 H 0.254 0.746 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.034 0.966 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.015 0.985 43 H 0.072 0.928 44 H 0.127 0.873 45 H 0.054 0.946 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.522 19.337 -14.735 25.761 hybrid contribution -0.823 -1.010 1.332 1.863 sum -9.344 18.327 -13.403 24.553 Atomic orbital electron populations 1.22476 0.85069 1.03564 1.01372 1.62268 1.09749 1.13933 1.40999 1.22909 0.96105 0.89670 1.02657 1.23004 0.92785 0.97017 0.89185 1.88105 1.70224 1.22427 1.50097 1.21931 0.93983 0.85323 0.96511 0.87106 1.20541 0.79957 0.82138 0.86920 1.90708 1.40387 1.67050 1.46702 1.45686 1.54436 1.08924 1.26575 1.21216 0.99368 0.88947 0.88784 1.22635 0.97302 0.90467 0.87481 0.90791 1.21605 0.97916 0.85014 0.96538 1.44346 1.66102 1.04099 1.19189 1.19525 1.16337 0.91859 1.12010 0.90898 1.25839 0.98330 0.99400 1.00995 1.70187 1.26854 1.11036 1.50134 0.85277 0.78854 0.77230 0.78686 1.19969 1.22097 1.20226 1.21332 0.95168 0.96647 0.85232 1.23162 0.99379 0.81285 0.98478 1.87809 1.71193 1.24843 1.47022 1.22636 0.92618 1.01414 0.92814 0.95570 0.89483 0.90153 0.86899 0.94574 0.90950 0.86331 0.74610 0.91977 0.89267 0.96580 0.90904 0.93918 0.91394 0.98460 0.92811 0.87298 0.94624 0.87130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.60 127.69 1.23 1.46 16 2 N -0.54 -7.63 4.99 -921.44 -4.59 -12.23 16 3 C 0.01 0.19 5.66 86.31 0.49 0.67 16 4 C 0.06 0.84 7.01 72.01 0.50 1.34 16 5 O -0.39 -9.50 10.02 -130.06 -1.30 -10.80 16 6 C 0.08 1.76 3.22 29.88 0.10 1.85 16 7 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 8 C 0.52 14.15 7.18 87.66 0.63 14.78 16 9 O -0.57 -21.11 16.51 15.89 0.26 -20.85 16 10 N -0.70 -16.71 5.47 -463.05 -2.53 -19.24 16 11 C 0.14 4.00 5.35 86.38 0.46 4.46 16 12 C 0.08 2.58 2.81 30.69 0.09 2.67 16 13 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 14 C 0.12 4.69 6.02 86.35 0.52 5.21 16 15 N -0.61 -30.29 3.05 -697.53 -2.13 -32.42 16 16 C -0.27 -14.36 9.65 84.03 0.81 -13.55 16 17 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 18 C -0.05 -2.74 4.95 84.86 0.42 -2.32 16 19 N -0.94 -54.59 11.14 21.65 0.24 -54.35 16 20 Si 0.97 43.65 29.59 68.60 2.03 45.68 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 23 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 24 C 0.14 6.71 5.45 86.36 0.47 7.18 16 25 C 0.05 1.94 6.98 72.08 0.50 2.44 16 26 O -0.39 -13.36 10.33 -148.98 -1.54 -14.90 16 27 C 0.03 0.57 4.90 86.31 0.42 0.99 16 28 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.04 0.53 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.42 7.73 8.34 -92.71 -0.77 6.96 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.07 2.78 7.96 -2.39 -0.02 2.76 16 40 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 41 H 0.07 3.56 6.14 -2.39 -0.01 3.55 16 42 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.11 3.29 8.14 -2.39 -0.02 3.28 16 45 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 46 H 0.11 1.42 8.01 -2.39 -0.02 1.40 16 Total: -1.00 -72.45 368.09 -2.73 -75.18 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.19 Total: 16.72 kcal Atomic # 6 Polarization: 20.56 SS G_CDS: 6.64 Total: 27.21 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -9.01 Total: -118.24 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -2.58 Total: -46.55 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -72.45 -2.73 -75.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035326273.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.449 kcal (2) G-P(sol) polarization free energy of solvation -72.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds