Wall clock time and date at job start Fri Apr 10 2020 18:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47018 * 110.99681 * 2 1 4 4 C 1.53100 * 109.25914 * 182.39303 * 3 2 1 5 5 O 1.43021 * 109.25507 * 303.15275 * 4 3 2 6 6 C 1.43013 * 113.73895 * 58.66663 * 5 4 3 7 7 C 1.47012 * 111.00243 * 123.63091 * 2 1 3 8 8 H 1.09005 * 109.50936 * 297.54849 * 7 2 1 9 9 C 1.50704 * 109.50228 * 57.63206 * 7 2 1 10 10 O 1.21278 * 120.00220 * 29.01564 * 9 7 2 11 11 N 1.34776 * 119.99859 * 209.01668 * 9 7 2 12 12 C 1.46494 * 119.99797 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.47073 * 179.97438 * 12 11 9 14 14 H 1.08992 * 109.51099 * 59.89592 * 13 12 11 15 15 C 1.53297 * 109.51315 * 179.97438 * 13 12 11 16 16 N 1.47151 * 108.38514 * 172.22443 * 15 13 12 17 17 C 1.36943 * 120.98310 * 129.43964 * 16 15 13 18 18 H 1.07998 * 119.99620 * 332.26159 * 17 16 15 19 19 C 1.38813 * 119.99834 * 152.25509 * 17 16 15 20 20 N 1.31620 * 119.99881 * 159.54180 * 19 17 16 21 21 Si 1.86803 * 120.00116 * 339.53663 * 19 17 16 22 22 H 1.48498 * 109.46808 * 91.77391 * 21 19 17 23 23 H 1.48497 * 109.46974 * 211.77410 * 21 19 17 24 24 H 1.48503 * 109.47199 * 331.77645 * 21 19 17 25 25 C 1.47154 * 118.03883 * 309.46350 * 16 15 13 26 26 C 1.53302 * 108.38300 * 50.53534 * 25 16 15 27 27 O 1.42968 * 109.22023 * 307.69779 * 26 25 16 28 28 H 1.08998 * 109.47707 * 289.91350 * 1 2 3 29 29 H 1.09001 * 109.46720 * 169.91086 * 1 2 3 30 30 H 1.09003 * 109.47196 * 49.91546 * 1 2 3 31 31 H 1.09003 * 109.50968 * 302.32674 * 3 2 1 32 32 H 1.09005 * 109.50950 * 62.45486 * 3 2 1 33 33 H 1.08996 * 109.51033 * 183.21882 * 4 3 2 34 34 H 1.08999 * 109.50666 * 63.08344 * 4 3 2 35 35 H 1.09000 * 109.50430 * 181.39459 * 6 5 4 36 36 H 1.09004 * 109.54062 * 61.29215 * 6 5 4 37 37 H 0.97004 * 119.99810 * 359.97438 * 11 9 7 38 38 H 1.08994 * 109.47539 * 299.99454 * 12 11 9 39 39 H 1.09007 * 109.47485 * 59.99865 * 12 11 9 40 40 H 1.08998 * 109.68153 * 291.94980 * 15 13 12 41 41 H 1.08997 * 109.68473 * 52.50517 * 15 13 12 42 42 H 0.96994 * 120.00296 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.68154 * 170.25370 * 25 16 15 44 44 H 1.08998 * 109.67889 * 290.81458 * 25 16 15 45 45 H 1.08994 * 109.51443 * 67.61913 * 26 25 16 46 46 H 1.08995 * 109.51154 * 187.72622 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3726 0.0000 4 6 3.5249 1.3266 -0.0603 5 8 4.0174 0.5575 1.0403 6 6 3.5249 -0.7848 1.0710 7 6 1.9959 -0.7601 1.1427 8 1 1.6827 -0.2842 2.0720 9 6 1.4662 -2.1702 1.0962 10 8 1.1912 -2.6799 0.0307 11 7 1.2981 -2.8649 2.2389 12 6 0.7838 -4.2359 2.1936 13 6 0.6899 -4.7926 3.6156 14 1 0.0178 -4.1705 4.2065 15 6 0.1511 -6.2270 3.5695 16 7 0.2468 -6.8025 4.9204 17 6 -0.8317 -7.4102 5.5058 18 1 -1.8333 -7.1115 5.2336 19 6 -0.6376 -8.4102 6.4488 20 7 -1.6001 -8.7137 7.2938 21 14 0.9895 -9.3251 6.5187 22 1 1.8999 -8.6435 7.4735 23 1 0.7538 -10.7203 6.9693 24 1 1.6081 -9.3387 5.1687 25 6 1.5356 -6.7051 5.6240 26 6 2.0069 -5.2474 5.5702 27 8 1.9886 -4.7966 4.2135 28 1 -0.3634 0.3500 0.9662 29 1 -0.3633 -1.0118 -0.1800 30 1 -0.3634 0.6617 -0.7863 31 1 1.6133 1.9093 -0.8682 32 1 1.6826 1.8827 0.9110 33 1 3.9221 2.3400 -0.0029 34 1 3.8385 0.8645 -0.9964 35 1 3.9222 -1.2983 1.9465 36 1 3.8386 -1.3089 0.1681 37 1 1.5184 -2.4574 3.0911 38 1 -0.2056 -4.2379 1.7363 39 1 1.4577 -4.8576 1.6041 40 1 -0.8901 -6.2179 3.2472 41 1 0.7457 -6.8204 2.8749 42 1 -1.4647 -9.4126 7.9525 43 1 1.4110 -7.0125 6.6624 44 1 2.2695 -7.3465 5.1362 45 1 1.3403 -4.6268 6.1690 46 1 3.0209 -5.1778 5.9640 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035332547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:01 Heat of formation + Delta-G solvation = -78.994191 kcal Electronic energy + Delta-G solvation = -27133.169505 eV Core-core repulsion = 23252.431128 eV Total energy + Delta-G solvation = -3880.738377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.70828 -39.19335 -38.51030 -35.97607 -35.06880 -34.46687 -32.23257 -31.64594 -31.03367 -29.18238 -27.81418 -26.14681 -24.72781 -24.51772 -23.21633 -22.26091 -21.31248 -20.47795 -19.83567 -17.68148 -17.00847 -16.85597 -16.69272 -16.33952 -16.03435 -15.57675 -15.38981 -15.19512 -14.75874 -14.60050 -14.24694 -14.13579 -14.09042 -13.76403 -13.63277 -13.14537 -12.95051 -12.64883 -12.46885 -12.33459 -12.02477 -11.94085 -11.77091 -11.59255 -11.27117 -11.07519 -10.91270 -10.50661 -10.36604 -10.26227 -9.91774 -9.74665 -9.61738 -9.48113 -9.11365 -8.76166 -8.64547 -7.09226 -6.05704 -3.44228 2.43443 2.85282 3.23645 3.35964 3.42022 3.45498 3.61608 3.96818 4.41996 4.43272 4.50568 4.54752 4.64913 4.69548 4.81428 4.84725 5.14126 5.15210 5.17664 5.20221 5.25551 5.30109 5.31429 5.40106 5.52338 5.53987 5.66068 5.71231 5.75000 5.81852 5.93586 6.06510 6.12976 6.34191 6.38735 6.43216 6.44832 6.53079 6.63900 6.68954 7.41663 7.51150 7.79432 8.12091 8.20476 8.78100 9.58676 9.94821 11.09802 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.031485 B = 0.002720 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.100145 B =10291.124180 C =10743.484092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.519 5.519 3 C 0.018 3.982 4 C 0.060 3.940 5 O -0.379 6.379 6 C 0.077 3.923 7 C 0.032 3.968 8 H 0.069 0.931 9 C 0.517 3.483 10 O -0.521 6.521 11 N -0.719 5.719 12 C 0.131 3.869 13 C 0.063 3.937 14 H 0.064 0.936 15 C 0.124 3.876 16 N -0.607 5.607 17 C -0.265 4.265 18 H 0.088 0.912 19 C 0.026 3.974 20 N -0.905 5.905 21 Si 0.883 3.117 22 H -0.287 1.287 23 H -0.301 1.301 24 H -0.270 1.270 25 C 0.090 3.910 26 C 0.050 3.950 27 O -0.386 6.386 28 H 0.026 0.974 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.404 0.596 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.035 0.965 42 H 0.264 0.736 43 H 0.081 0.919 44 H 0.034 0.966 45 H 0.052 0.948 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.587 20.285 -11.580 24.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.244 5.244 3 C -0.110 4.110 4 C -0.017 4.017 5 O -0.297 6.297 6 C -0.001 4.001 7 C -0.080 4.080 8 H 0.087 0.913 9 C 0.301 3.699 10 O -0.395 6.395 11 N -0.371 5.371 12 C 0.008 3.992 13 C 0.003 3.997 14 H 0.082 0.918 15 C -0.002 4.002 16 N -0.332 5.332 17 C -0.393 4.393 18 H 0.105 0.895 19 C -0.173 4.173 20 N -0.547 5.547 21 Si 0.713 3.287 22 H -0.215 1.215 23 H -0.229 1.229 24 H -0.195 1.195 25 C -0.036 4.036 26 C -0.028 4.028 27 O -0.305 6.305 28 H 0.045 0.955 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.124 0.876 36 H 0.088 0.912 37 H 0.238 0.762 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.052 0.948 45 H 0.070 0.930 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.731 19.667 -12.613 24.942 hybrid contribution 0.156 -0.276 1.383 1.419 sum 8.888 19.390 -11.230 24.106 Atomic orbital electron populations 1.22513 0.86073 1.03992 1.00296 1.61979 1.08925 1.12817 1.40729 1.22874 0.96603 0.89421 1.02116 1.22739 0.92141 0.96594 0.90267 1.88026 1.69501 1.23569 1.48555 1.22555 0.89364 0.84390 1.03802 1.22333 0.98072 0.93262 0.94319 0.91317 1.20100 0.78510 0.87056 0.84188 1.90716 1.49440 1.70143 1.29247 1.45977 1.66469 1.15608 1.09056 1.21427 1.00159 0.81478 0.96179 1.22851 0.85866 0.98726 0.92268 0.91785 1.21483 1.00140 0.90688 0.87938 1.44347 1.09136 1.67292 1.12395 1.18891 0.86443 1.14033 1.19923 0.89481 1.25283 0.97013 0.97493 0.97547 1.69825 1.33528 1.32695 1.18676 0.86955 0.84397 0.79206 0.78131 1.21476 1.22888 1.19535 1.22018 0.88474 0.94718 0.98358 1.23065 1.00889 0.96397 0.82464 1.87800 1.28433 1.86891 1.27393 0.95517 0.89919 0.90906 0.89034 0.93722 0.88107 0.91861 0.87555 0.91241 0.76182 0.89913 0.90530 0.90756 0.94700 0.92584 0.90058 0.94788 0.93005 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.12 60.06 0.55 0.73 16 2 N -0.52 -5.31 4.53 -235.97 -1.07 -6.38 16 3 C 0.02 0.14 5.64 -3.71 -0.02 0.12 16 4 C 0.06 0.45 7.01 37.21 0.26 0.71 16 5 O -0.38 -3.76 10.83 -35.23 -0.38 -4.15 16 6 C 0.08 0.75 6.28 37.20 0.23 0.98 16 7 C 0.03 0.33 2.36 -68.76 -0.16 0.17 16 8 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 9 C 0.52 6.50 6.05 -10.98 -0.07 6.43 16 10 O -0.52 -8.38 15.43 5.56 0.09 -8.29 16 11 N -0.72 -8.44 5.45 -60.30 -0.33 -8.77 16 12 C 0.13 1.76 5.37 -4.04 -0.02 1.74 16 13 C 0.06 0.97 2.86 -26.58 -0.08 0.90 16 14 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 15 C 0.12 2.35 6.02 -3.53 -0.02 2.33 16 16 N -0.61 -14.04 2.81 -171.82 -0.48 -14.52 16 17 C -0.27 -7.21 10.08 -15.06 -0.15 -7.36 16 18 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 19 C 0.03 0.74 5.23 -17.43 -0.09 0.65 16 20 N -0.90 -27.14 13.97 55.49 0.78 -26.36 16 21 Si 0.88 21.92 24.33 -169.99 -4.14 17.79 16 22 H -0.29 -6.78 6.61 56.52 0.37 -6.41 16 23 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 24 H -0.27 -6.69 6.66 56.52 0.38 -6.31 16 25 C 0.09 1.90 4.40 -3.53 -0.02 1.88 16 26 C 0.05 0.84 6.99 37.31 0.26 1.10 16 27 O -0.39 -6.31 10.14 -35.23 -0.36 -6.67 16 28 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 29 H 0.08 0.97 6.46 -51.93 -0.34 0.63 16 30 H 0.07 0.57 8.04 -51.93 -0.42 0.16 16 31 H 0.09 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.40 4.09 8.36 -40.82 -0.34 3.75 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 1.36 7.96 -51.93 -0.41 0.95 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.08 1.84 4.84 -51.93 -0.25 1.59 16 44 H 0.03 0.73 6.91 -51.93 -0.36 0.37 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 358.10 15.07 5.40 5.40 Total: -1.00 -32.87 358.10 -7.46 -40.33 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.64 Total: 1.24 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 0.68 Total: 10.38 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -1.11 Total: -56.02 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.65 Total: -19.11 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.14 Total: 17.79 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.87 -7.46 -40.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035332547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.662 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds