Wall clock time and date at job start Fri Apr 10 2020 18:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34774 * 119.99859 * 2 1 4 4 O 1.21281 * 120.00028 * 174.64286 * 3 2 1 5 5 C 1.50701 * 120.00036 * 354.64095 * 3 2 1 6 6 H 1.09001 * 109.50519 * 44.05571 * 5 3 2 7 7 C 1.53105 * 109.50798 * 283.96642 * 5 3 2 8 8 N 1.47009 * 109.25670 * 183.21562 * 7 5 3 9 9 C 1.46908 * 110.99799 * 182.39740 * 8 7 5 10 10 C 1.47012 * 110.75514 * 58.61749 * 8 7 5 11 11 C 1.53093 * 109.25843 * 301.38248 * 10 8 7 12 12 O 1.43016 * 109.25876 * 56.84932 * 11 10 8 13 13 C 1.46503 * 119.99995 * 179.97438 * 2 1 3 14 14 H 1.08997 * 110.88028 * 183.87849 * 13 2 1 15 15 C 1.55124 * 110.90693 * 307.97220 * 13 2 1 16 16 N 1.47427 * 104.72227 * 155.27685 * 15 13 2 17 17 C 1.36932 * 125.64702 * 155.81870 * 16 15 13 18 18 H 1.07994 * 120.00647 * 359.71704 * 17 16 15 19 19 C 1.38814 * 119.99907 * 179.71584 * 17 16 15 20 20 N 1.31627 * 119.99852 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00164 * 180.27537 * 19 17 16 22 22 H 1.48501 * 109.47172 * 269.72546 * 21 19 17 23 23 H 1.48497 * 109.47060 * 29.72763 * 21 19 17 24 24 H 1.48503 * 109.47069 * 149.72488 * 21 19 17 25 25 C 1.47024 * 108.69923 * 335.55336 * 16 15 13 26 26 C 1.54316 * 107.27218 * 1.28914 * 25 16 15 27 27 H 1.09000 * 110.71906 * 263.64975 * 26 25 16 28 28 O 1.42904 * 110.72220 * 140.55438 * 26 25 16 29 29 H 1.08997 * 109.46856 * 275.16457 * 1 2 3 30 30 H 1.08989 * 109.46933 * 35.16594 * 1 2 3 31 31 H 1.09002 * 109.46909 * 155.16871 * 1 2 3 32 32 H 1.08996 * 109.50704 * 303.15249 * 7 5 3 33 33 H 1.09003 * 109.50276 * 63.27999 * 7 5 3 34 34 H 1.08992 * 109.47386 * 59.99550 * 9 8 7 35 35 H 1.08999 * 109.47081 * 180.02562 * 9 8 7 36 36 H 1.09003 * 109.46260 * 299.99782 * 9 8 7 37 37 H 1.08999 * 109.50369 * 61.31956 * 10 8 7 38 38 H 1.09001 * 109.50562 * 181.40027 * 10 8 7 39 39 H 1.09000 * 109.50893 * 176.78060 * 11 10 8 40 40 H 1.08995 * 109.50739 * 296.86752 * 11 10 8 41 41 H 1.09002 * 110.49518 * 36.43763 * 15 13 2 42 42 H 1.09000 * 110.34595 * 274.04251 * 15 13 2 43 43 H 0.96999 * 119.99620 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.87857 * 120.70878 * 25 16 15 45 45 H 1.09001 * 109.88389 * 241.86797 * 25 16 15 46 46 H 0.96703 * 113.99776 * 61.45043 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3477 1.1695 0.0981 5 6 1.3903 2.4694 -0.1219 6 1 0.5137 2.4473 0.5255 7 6 0.9486 2.6713 -1.5739 8 7 0.2870 3.9778 -1.7022 9 6 -0.2038 4.1871 -3.0710 10 6 1.1921 5.0624 -1.2953 11 6 1.6313 4.8366 0.1538 12 8 2.2442 3.5493 0.2658 13 6 2.1976 -1.2688 0.0006 14 1 3.2717 -1.0971 0.0694 15 6 1.7022 -2.1934 1.1433 16 7 2.0267 -3.5578 0.6886 17 6 2.2164 -4.6451 1.4990 18 1 2.1353 -4.5406 2.5708 19 6 2.5128 -5.8819 0.9428 20 7 2.6121 -6.0094 -0.3635 21 14 2.7640 -7.3669 2.0479 22 1 4.1988 -7.4729 2.4161 23 1 1.9473 -7.2121 3.2783 24 1 2.3457 -8.5963 1.3276 25 6 2.1065 -3.5588 -0.7795 26 6 1.8485 -2.1131 -1.2534 27 1 0.8034 -1.9795 -1.5328 28 8 2.7084 -1.7775 -2.3443 29 1 -0.3633 0.0925 1.0235 30 1 -0.3633 0.8400 -0.5918 31 1 -0.3633 -0.9327 -0.4316 32 1 1.8204 2.6390 -2.2273 33 1 0.2524 1.8814 -1.8556 34 1 -0.9207 3.4060 -3.3234 35 1 -0.6884 5.1612 -3.1382 36 1 0.6343 4.1499 -3.7670 37 1 2.0678 5.0684 -1.9444 38 1 0.6738 6.0180 -1.3746 39 1 2.3472 5.6067 0.4414 40 1 0.7619 4.8848 0.8093 41 1 0.6265 -2.0857 1.2823 42 1 2.2298 -1.9669 2.0698 43 1 2.8189 -6.8737 -0.7521 44 1 3.0982 -3.8815 -1.0965 45 1 1.3484 -4.2249 -1.1915 46 1 2.5831 -2.3297 -3.1281 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047334844.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:15 Heat of formation + Delta-G solvation = -70.034357 kcal Electronic energy + Delta-G solvation = -27816.404171 eV Core-core repulsion = 23936.054322 eV Total energy + Delta-G solvation = -3880.349849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.59602 -39.15467 -37.68511 -35.96739 -35.20954 -34.78742 -32.27249 -31.40731 -29.24710 -28.43388 -27.35470 -26.75899 -25.26910 -24.42785 -24.10123 -21.20758 -20.44126 -20.42648 -19.00481 -17.59892 -17.13272 -16.70565 -16.56295 -16.27199 -15.79749 -15.57910 -15.26510 -14.71850 -14.61732 -14.40678 -14.03879 -14.00156 -13.55861 -13.05969 -12.95353 -12.74333 -12.72076 -12.51287 -12.31574 -12.08290 -12.03405 -11.83393 -11.69220 -11.36013 -11.22690 -11.02404 -10.86074 -10.81960 -10.15586 -9.99525 -9.93769 -9.83540 -9.56297 -9.27396 -8.81973 -8.72465 -8.37349 -6.93897 -5.78085 -3.13238 2.62069 2.75545 3.38242 3.43235 3.44778 3.46586 3.79611 4.41451 4.44893 4.52458 4.59143 4.67586 4.75486 4.86552 4.96209 5.02301 5.14837 5.16565 5.22104 5.25866 5.37263 5.41530 5.45810 5.49986 5.50311 5.59455 5.60518 5.63430 5.76412 5.88049 6.01816 6.09896 6.47379 6.48073 6.51638 6.58764 6.74300 6.94446 7.32471 7.44777 7.53094 7.71417 8.14821 8.17490 8.31522 9.12574 9.72760 10.35619 11.33392 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.029859 B = 0.003105 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.504171 B = 9014.502026 C = 9366.968477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.599 5.599 3 C 0.523 3.477 4 O -0.514 6.514 5 C 0.081 3.919 6 H 0.090 0.910 7 C 0.028 3.972 8 N -0.540 5.540 9 C 0.024 3.976 10 C 0.013 3.987 11 C 0.062 3.938 12 O -0.356 6.356 13 C 0.135 3.865 14 H 0.115 0.885 15 C 0.133 3.867 16 N -0.599 5.599 17 C -0.230 4.230 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.923 5.923 21 Si 0.916 3.084 22 H -0.288 1.288 23 H -0.280 1.280 24 H -0.290 1.290 25 C 0.153 3.847 26 C 0.064 3.936 27 H 0.056 0.944 28 O -0.562 6.562 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.029 0.971 37 H 0.046 0.954 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.027 0.973 42 H 0.049 0.951 43 H 0.253 0.747 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.043 20.378 -4.768 22.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.333 5.333 3 C 0.308 3.692 4 O -0.387 6.387 5 C 0.019 3.981 6 H 0.108 0.892 7 C -0.100 4.100 8 N -0.265 5.265 9 C -0.124 4.124 10 C -0.115 4.115 11 C -0.015 4.015 12 O -0.274 6.274 13 C 0.031 3.969 14 H 0.133 0.867 15 C 0.005 3.995 16 N -0.327 5.327 17 C -0.358 4.358 18 H 0.099 0.901 19 C -0.203 4.203 20 N -0.570 5.570 21 Si 0.746 3.254 22 H -0.215 1.215 23 H -0.206 1.206 24 H -0.216 1.216 25 C 0.027 3.973 26 C 0.004 3.996 27 H 0.074 0.926 28 O -0.366 6.366 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.107 0.893 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -8.339 20.583 -3.936 22.554 hybrid contribution 0.167 -1.232 -0.620 1.389 sum -8.172 19.351 -4.556 21.494 Atomic orbital electron populations 1.21962 0.79807 1.03546 1.02214 1.47649 1.06800 1.05537 1.73285 1.19936 0.87842 0.84295 0.77114 1.90724 1.13919 1.86654 1.47437 1.21947 0.93194 0.86978 0.95939 0.89233 1.22708 0.98940 0.92439 0.95926 1.62241 1.37468 1.01791 1.25011 1.22396 0.99671 1.02763 0.87543 1.22862 0.95655 0.95338 0.97613 1.22738 0.98596 0.85328 0.94830 1.88138 1.38811 1.13598 1.86842 1.22472 0.98525 0.80908 0.94951 0.86674 1.21815 0.97402 0.85418 0.94848 1.44237 1.83228 1.03365 1.01863 1.19077 1.41554 0.85772 0.89427 0.90102 1.24824 1.01611 0.97767 0.96089 1.69933 1.54785 1.23538 1.08744 0.86064 0.77981 0.82111 0.79265 1.21473 1.20603 1.21637 1.21854 1.01931 0.89078 0.84432 1.23586 0.92017 0.97405 0.86592 0.92636 1.86497 1.63443 1.61249 1.25456 0.92011 0.91210 0.90064 0.92910 0.88613 0.90869 0.90982 0.95242 0.93577 0.89334 0.87850 0.91998 0.95506 0.93234 0.93630 0.92140 0.93402 0.77934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 8.44 59.85 0.51 1.27 16 2 N -0.60 -9.44 2.91 -171.35 -0.50 -9.94 16 3 C 0.52 8.88 6.96 -10.99 -0.08 8.80 16 4 O -0.51 -11.14 15.97 -13.80 -0.22 -11.36 16 5 C 0.08 1.06 2.38 -27.83 -0.07 1.00 16 6 H 0.09 0.99 7.30 -51.93 -0.38 0.62 16 7 C 0.03 0.32 4.69 -3.71 -0.02 0.30 16 8 N -0.54 -5.01 4.99 -242.59 -1.21 -6.22 16 9 C 0.02 0.18 9.60 60.07 0.58 0.75 16 10 C 0.01 0.11 5.66 -3.71 -0.02 0.09 16 11 C 0.06 0.59 7.01 37.21 0.26 0.85 16 12 O -0.36 -5.06 10.05 -54.59 -0.55 -5.61 16 13 C 0.14 2.62 3.19 -65.67 -0.21 2.41 16 14 H 0.12 2.63 7.02 -51.93 -0.36 2.26 16 15 C 0.13 2.75 6.79 -2.41 -0.02 2.73 16 16 N -0.60 -15.15 3.39 -169.94 -0.58 -15.72 16 17 C -0.23 -6.35 10.28 -15.06 -0.15 -6.51 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 20 N -0.92 -26.61 10.31 55.49 0.57 -26.03 16 21 Si 0.92 21.92 29.55 -169.99 -5.02 16.90 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 C 0.15 3.62 5.14 -3.07 -0.02 3.61 16 26 C 0.06 1.22 3.87 -24.90 -0.10 1.13 16 27 H 0.06 0.94 6.47 -51.93 -0.34 0.60 16 28 O -0.56 -10.40 13.39 -35.23 -0.47 -10.88 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.62 4.79 -51.93 -0.25 0.37 16 31 H 0.08 0.94 6.37 -51.93 -0.33 0.60 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.95 6.18 -51.93 -0.32 0.63 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.03 0.52 6.96 -51.93 -0.36 0.16 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.06 1.63 7.30 -51.93 -0.38 1.25 16 45 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 46 H 0.37 5.35 9.11 45.56 0.42 5.77 16 LS Contribution 357.94 15.07 5.39 5.39 Total: -1.00 -34.92 357.94 -8.48 -43.40 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.47 Total: 3.91 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 0.57 Total: 16.16 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -1.71 Total: -57.92 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -1.24 Total: -27.84 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.92 -8.48 -43.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047334844.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.634 kcal (2) G-P(sol) polarization free energy of solvation -34.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds