Wall clock time and date at job start Fri Apr 10 2020 18:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34774 * 119.99859 * 2 1 4 4 O 1.21281 * 120.00028 * 174.64286 * 3 2 1 5 5 C 1.50701 * 120.00036 * 354.64095 * 3 2 1 6 6 H 1.09001 * 109.50519 * 44.05571 * 5 3 2 7 7 C 1.53105 * 109.50798 * 283.96642 * 5 3 2 8 8 N 1.47009 * 109.25670 * 183.21562 * 7 5 3 9 9 C 1.46908 * 110.99799 * 182.39740 * 8 7 5 10 10 C 1.47012 * 110.75514 * 58.61749 * 8 7 5 11 11 C 1.53093 * 109.25843 * 301.38248 * 10 8 7 12 12 O 1.43016 * 109.25876 * 56.84932 * 11 10 8 13 13 C 1.46503 * 119.99995 * 179.97438 * 2 1 3 14 14 H 1.08997 * 110.88028 * 183.87849 * 13 2 1 15 15 C 1.55124 * 110.90693 * 307.97220 * 13 2 1 16 16 N 1.47427 * 104.72227 * 155.27685 * 15 13 2 17 17 C 1.36932 * 125.64702 * 155.81870 * 16 15 13 18 18 H 1.07994 * 120.00647 * 359.71704 * 17 16 15 19 19 C 1.38814 * 119.99907 * 179.71584 * 17 16 15 20 20 N 1.31627 * 119.99852 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00164 * 180.27537 * 19 17 16 22 22 H 1.48501 * 109.47172 * 269.72546 * 21 19 17 23 23 H 1.48497 * 109.47060 * 29.72763 * 21 19 17 24 24 H 1.48503 * 109.47069 * 149.72488 * 21 19 17 25 25 C 1.47024 * 108.69923 * 335.55336 * 16 15 13 26 26 C 1.54316 * 107.27218 * 1.28914 * 25 16 15 27 27 H 1.09000 * 110.71906 * 263.64975 * 26 25 16 28 28 O 1.42904 * 110.72220 * 140.55438 * 26 25 16 29 29 H 1.08997 * 109.46856 * 275.16457 * 1 2 3 30 30 H 1.08989 * 109.46933 * 35.16594 * 1 2 3 31 31 H 1.09002 * 109.46909 * 155.16871 * 1 2 3 32 32 H 1.08996 * 109.50704 * 303.15249 * 7 5 3 33 33 H 1.09003 * 109.50276 * 63.27999 * 7 5 3 34 34 H 1.08992 * 109.47386 * 59.99550 * 9 8 7 35 35 H 1.08999 * 109.47081 * 180.02562 * 9 8 7 36 36 H 1.09003 * 109.46260 * 299.99782 * 9 8 7 37 37 H 1.08999 * 109.50369 * 61.31956 * 10 8 7 38 38 H 1.09001 * 109.50562 * 181.40027 * 10 8 7 39 39 H 1.09000 * 109.50893 * 176.78060 * 11 10 8 40 40 H 1.08995 * 109.50739 * 296.86752 * 11 10 8 41 41 H 1.09002 * 110.49518 * 36.43763 * 15 13 2 42 42 H 1.09000 * 110.34595 * 274.04251 * 15 13 2 43 43 H 0.96999 * 119.99620 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.87857 * 120.70878 * 25 16 15 45 45 H 1.09001 * 109.88389 * 241.86797 * 25 16 15 46 46 H 0.96703 * 113.99776 * 61.45043 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3477 1.1695 0.0981 5 6 1.3903 2.4694 -0.1219 6 1 0.5137 2.4473 0.5255 7 6 0.9486 2.6713 -1.5739 8 7 0.2870 3.9778 -1.7022 9 6 -0.2038 4.1871 -3.0710 10 6 1.1921 5.0624 -1.2953 11 6 1.6313 4.8366 0.1538 12 8 2.2442 3.5493 0.2658 13 6 2.1976 -1.2688 0.0006 14 1 3.2717 -1.0971 0.0694 15 6 1.7022 -2.1934 1.1433 16 7 2.0267 -3.5578 0.6886 17 6 2.2164 -4.6451 1.4990 18 1 2.1353 -4.5406 2.5708 19 6 2.5128 -5.8819 0.9428 20 7 2.6121 -6.0094 -0.3635 21 14 2.7640 -7.3669 2.0479 22 1 4.1988 -7.4729 2.4161 23 1 1.9473 -7.2121 3.2783 24 1 2.3457 -8.5963 1.3276 25 6 2.1065 -3.5588 -0.7795 26 6 1.8485 -2.1131 -1.2534 27 1 0.8034 -1.9795 -1.5328 28 8 2.7084 -1.7775 -2.3443 29 1 -0.3633 0.0925 1.0235 30 1 -0.3633 0.8400 -0.5918 31 1 -0.3633 -0.9327 -0.4316 32 1 1.8204 2.6390 -2.2273 33 1 0.2524 1.8814 -1.8556 34 1 -0.9207 3.4060 -3.3234 35 1 -0.6884 5.1612 -3.1382 36 1 0.6343 4.1499 -3.7670 37 1 2.0678 5.0684 -1.9444 38 1 0.6738 6.0180 -1.3746 39 1 2.3472 5.6067 0.4414 40 1 0.7619 4.8848 0.8093 41 1 0.6265 -2.0857 1.2823 42 1 2.2298 -1.9669 2.0698 43 1 2.8189 -6.8737 -0.7521 44 1 3.0982 -3.8815 -1.0965 45 1 1.3484 -4.2249 -1.1915 46 1 2.5831 -2.3297 -3.1281 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047334844.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:14 Heat of formation + Delta-G solvation = -99.173517 kcal Electronic energy + Delta-G solvation = -27817.667740 eV Core-core repulsion = 23936.054322 eV Total energy + Delta-G solvation = -3881.613418 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.74521 -40.34581 -39.16961 -36.86194 -36.70543 -36.33468 -33.98280 -32.59299 -30.46960 -29.73585 -28.92384 -27.93167 -26.66502 -25.59238 -25.12422 -22.44136 -22.22181 -21.48652 -20.35803 -19.02255 -18.87288 -17.96230 -17.82219 -17.24313 -17.07102 -16.69493 -16.36440 -16.05289 -15.87563 -15.65884 -15.46906 -15.10740 -14.75750 -14.52164 -14.30030 -14.14747 -14.03985 -13.75075 -13.42100 -13.20483 -13.16214 -12.98670 -12.80536 -12.74625 -12.73695 -12.67727 -12.40747 -12.06959 -11.88420 -11.79701 -11.60623 -11.01646 -10.81682 -10.77629 -10.75482 -9.74858 -9.54424 -8.97007 -7.88701 -5.26383 1.36724 1.46032 1.48679 1.54653 1.58398 2.47076 2.70786 2.85312 3.12635 3.32845 3.46099 3.55585 3.62645 3.81257 3.87690 3.94212 4.02649 4.05825 4.11519 4.23968 4.29516 4.40741 4.45371 4.47173 4.55649 4.61448 4.62527 4.67192 4.78958 4.79175 4.91014 4.93452 5.02083 5.03803 5.35515 5.41325 5.44325 5.64636 5.74865 5.87266 5.97817 6.12246 6.30822 6.82647 7.02039 7.04188 7.68441 8.30971 9.21048 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.029859 B = 0.003105 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.504171 B = 9014.502026 C = 9366.968477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.592 5.592 3 C 0.516 3.484 4 O -0.574 6.574 5 C 0.090 3.910 6 H 0.118 0.882 7 C 0.035 3.965 8 N -0.538 5.538 9 C 0.022 3.978 10 C 0.014 3.986 11 C 0.056 3.944 12 O -0.394 6.394 13 C 0.145 3.855 14 H 0.073 0.927 15 C 0.135 3.865 16 N -0.621 5.621 17 C -0.246 4.246 18 H 0.086 0.914 19 C -0.062 4.062 20 N -0.949 5.949 21 Si 0.981 3.019 22 H -0.290 1.290 23 H -0.266 1.266 24 H -0.291 1.291 25 C 0.164 3.836 26 C 0.085 3.915 27 H 0.092 0.908 28 O -0.573 6.573 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.025 0.975 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.022 0.978 37 H 0.031 0.969 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.040 0.960 43 H 0.249 0.751 44 H 0.017 0.983 45 H 0.027 0.973 46 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.873 22.154 -4.559 25.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.325 5.325 3 C 0.304 3.696 4 O -0.452 6.452 5 C 0.029 3.971 6 H 0.135 0.865 7 C -0.093 4.093 8 N -0.262 5.262 9 C -0.125 4.125 10 C -0.114 4.114 11 C -0.020 4.020 12 O -0.313 6.313 13 C 0.040 3.960 14 H 0.091 0.909 15 C 0.009 3.991 16 N -0.349 5.349 17 C -0.375 4.375 18 H 0.104 0.896 19 C -0.256 4.256 20 N -0.598 5.598 21 Si 0.809 3.191 22 H -0.217 1.217 23 H -0.190 1.190 24 H -0.218 1.218 25 C 0.038 3.962 26 C 0.025 3.975 27 H 0.109 0.891 28 O -0.381 6.381 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.104 0.896 32 H 0.043 0.957 33 H 0.130 0.870 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.040 0.960 37 H 0.050 0.950 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.035 0.965 45 H 0.046 0.954 46 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -11.231 22.397 -3.732 25.331 hybrid contribution 1.060 -1.700 -0.687 2.118 sum -10.171 20.697 -4.419 23.481 Atomic orbital electron populations 1.22335 0.76485 1.05154 1.04293 1.47655 1.08583 1.03836 1.72438 1.20790 0.87427 0.85784 0.75642 1.90692 1.16703 1.87564 1.50212 1.21906 0.92807 0.84655 0.97715 0.86465 1.22613 0.98403 0.94351 0.93969 1.62313 1.36811 1.00889 1.26236 1.22498 0.99614 1.04248 0.86169 1.22928 0.95473 0.96408 0.96629 1.23030 0.99539 0.83586 0.95867 1.88096 1.40540 1.15380 1.87241 1.21970 0.96781 0.82587 0.94707 0.90901 1.21922 0.98781 0.83566 0.94822 1.44504 1.83319 1.04618 1.02470 1.19466 1.41071 0.86785 0.90135 0.89627 1.25669 1.01920 1.00502 0.97471 1.70140 1.55733 1.23664 1.10237 0.85043 0.77613 0.78461 0.77980 1.21738 1.19020 1.21774 1.21607 0.98782 0.91844 0.84003 1.23360 0.93737 0.93846 0.86596 0.89083 1.86470 1.63808 1.61657 1.26126 0.90000 0.88142 0.89645 0.95654 0.86982 0.89922 0.89068 0.95970 0.95024 0.86420 0.86413 0.90374 0.92446 0.94122 0.94214 0.96493 0.95444 0.75780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.10 8.44 127.77 1.08 2.18 16 2 N -0.59 -17.89 2.91 -814.43 -2.37 -20.26 16 3 C 0.52 17.36 6.96 87.66 0.61 17.97 16 4 O -0.57 -25.89 15.97 15.48 0.25 -25.64 16 5 C 0.09 2.20 2.38 29.88 0.07 2.27 16 6 H 0.12 2.18 7.30 -2.39 -0.02 2.16 16 7 C 0.04 0.71 4.69 86.32 0.40 1.12 16 8 N -0.54 -8.31 4.99 -921.43 -4.59 -12.91 16 9 C 0.02 0.25 9.60 127.69 1.23 1.48 16 10 C 0.01 0.20 5.66 86.31 0.49 0.68 16 11 C 0.06 0.93 7.01 72.01 0.50 1.43 16 12 O -0.39 -10.85 10.05 -130.47 -1.31 -12.16 16 13 C 0.14 5.65 3.19 46.46 0.15 5.80 16 14 H 0.07 3.50 7.02 -2.39 -0.02 3.48 16 15 C 0.14 5.58 6.79 86.93 0.59 6.17 16 16 N -0.62 -31.91 3.39 -691.57 -2.35 -34.26 16 17 C -0.25 -13.74 10.28 84.03 0.86 -12.88 16 18 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 19 C -0.06 -3.52 5.49 84.86 0.47 -3.06 16 20 N -0.95 -56.31 10.31 21.65 0.22 -56.08 16 21 Si 0.98 45.53 29.55 68.60 2.03 47.56 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 C 0.16 7.98 5.14 86.73 0.45 8.42 16 26 C 0.09 3.20 3.87 31.78 0.12 3.32 16 27 H 0.09 2.83 6.47 -2.39 -0.02 2.82 16 28 O -0.57 -21.24 13.39 -148.98 -2.00 -23.23 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.10 1.32 4.79 -2.39 -0.01 1.31 16 31 H 0.08 1.61 6.37 -2.39 -0.02 1.59 16 32 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.11 1.84 6.18 -2.39 -0.01 1.82 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 2.06 6.96 -2.39 -0.02 2.04 16 42 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 44 H 0.02 0.96 7.30 -2.39 -0.02 0.94 16 45 H 0.03 1.43 7.51 -2.39 -0.02 1.41 16 46 H 0.39 11.09 9.11 -74.06 -0.67 10.42 16 Total: -1.00 -80.15 357.94 -2.78 -82.93 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.32 Total: 19.13 kcal Atomic # 6 Polarization: 27.90 SS G_CDS: 7.02 Total: 34.92 kcal Atomic # 7 Polarization: -114.42 SS G_CDS: -9.09 Total: -123.51 kcal Atomic # 8 Polarization: -57.97 SS G_CDS: -3.06 Total: -61.03 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -80.15 -2.78 -82.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047334844.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.241 kcal (2) G-P(sol) polarization free energy of solvation -80.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds