Wall clock time and date at job start Fri Apr 10 2020 18:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47246 * 2 1 4 4 C 1.46908 * 110.99764 * 293.95111 * 3 2 1 5 5 C 1.46897 * 111.00203 * 169.99809 * 3 2 1 6 6 C 1.52992 * 109.47323 * 189.99823 * 5 3 2 7 7 C 1.50703 * 109.47349 * 179.97438 * 6 5 3 8 8 O 1.21275 * 120.00008 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00325 * 179.97438 * 7 6 5 10 10 C 1.47529 * 118.76747 * 359.97438 * 9 7 6 11 11 C 1.53570 * 111.02027 * 221.65852 * 10 9 7 12 12 C 1.51536 * 109.58321 * 39.96503 * 11 10 9 13 13 O 1.42153 * 108.75754 * 268.59376 * 12 11 10 14 14 C 1.38022 * 119.43546 * 87.22527 * 13 12 11 15 15 H 1.09005 * 109.46406 * 56.58271 * 14 13 12 16 16 C 1.53005 * 109.46731 * 176.57398 * 14 13 12 17 17 N 1.46498 * 109.47171 * 300.00830 * 16 14 13 18 18 C 1.36939 * 119.99947 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99831 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00187 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99759 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00050 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47121 * 60.00213 * 22 20 18 24 24 H 1.48504 * 109.47068 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47374 * 300.00073 * 22 20 18 26 26 C 1.45120 * 118.76151 * 180.02562 * 9 7 6 27 27 H 1.09007 * 109.46702 * 60.00074 * 1 2 3 28 28 H 1.08992 * 109.47201 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47093 * 300.00585 * 1 2 3 30 30 H 1.09001 * 109.47093 * 239.99415 * 2 1 3 31 31 H 1.08999 * 109.46707 * 119.99617 * 2 1 3 32 32 H 1.08998 * 109.47038 * 296.04681 * 4 3 2 33 33 H 1.08999 * 109.46741 * 56.05018 * 4 3 2 34 34 H 1.09002 * 109.46609 * 176.04578 * 4 3 2 35 35 H 1.09009 * 109.47082 * 69.99482 * 5 3 2 36 36 H 1.09000 * 109.47098 * 310.00089 * 5 3 2 37 37 H 1.09002 * 109.47605 * 60.00022 * 6 5 3 38 38 H 1.09000 * 109.47251 * 300.00172 * 6 5 3 39 39 H 1.08998 * 109.18053 * 101.25396 * 10 9 7 40 40 H 1.08999 * 109.11594 * 342.02071 * 10 9 7 41 41 H 1.09007 * 109.44618 * 279.93069 * 11 10 9 42 42 H 1.08999 * 109.45275 * 160.00343 * 11 10 9 43 43 H 1.08995 * 109.58714 * 148.81227 * 12 11 10 44 44 H 1.09001 * 109.58774 * 28.37806 * 12 11 10 45 45 H 1.08998 * 109.46645 * 60.00629 * 16 14 13 46 46 H 1.08999 * 109.46670 * 180.02562 * 16 14 13 47 47 H 0.96997 * 120.00294 * 0.02562 * 17 16 14 48 48 H 0.97005 * 119.99747 * 180.02562 * 21 20 18 49 49 H 1.09002 * 109.45898 * 330.66960 * 26 9 7 50 50 H 1.09004 * 109.45772 * 210.69998 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0669 -1.2534 5 6 3.4685 1.4311 0.2382 6 6 3.8999 2.8791 0.4791 7 6 5.3861 2.9264 0.7241 8 8 6.0364 1.9028 0.7071 9 7 5.9929 4.1062 0.9609 10 6 5.1762 5.3347 0.9737 11 6 5.8977 6.4834 0.2537 12 6 6.5930 5.9507 -0.9828 13 8 7.9210 5.5800 -0.6366 14 6 8.1665 4.3113 -0.1517 15 1 7.8111 3.5727 -0.8703 16 6 9.6704 4.1302 0.0643 17 7 10.3719 4.3107 -1.2090 18 6 11.7353 4.1950 -1.2620 19 1 12.2935 3.9703 -0.3651 20 6 12.4000 4.3656 -2.4686 21 7 11.7197 4.6390 -3.5617 22 14 14.2598 4.2071 -2.5409 23 1 14.6581 2.8457 -2.1014 24 1 14.7221 4.4329 -3.9340 25 1 14.8781 5.2172 -1.6449 26 6 7.4254 4.1206 1.1928 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.1770 1.5789 -2.0860 33 1 0.5920 2.0179 -1.4052 34 1 1.9825 3.1098 -1.1988 35 1 3.9926 1.0358 -0.6321 36 1 3.7122 0.8290 1.1135 37 1 3.3759 3.2744 1.3493 38 1 3.6562 3.4812 -0.3962 39 1 4.9823 5.6252 2.0062 40 1 4.2280 5.1382 0.4732 41 1 6.6358 6.9248 0.9235 42 1 5.1716 7.2427 -0.0368 43 1 6.6179 6.7245 -1.7500 44 1 6.0561 5.0791 -1.3571 45 1 10.0257 4.8688 0.7828 46 1 9.8643 3.1281 0.4468 47 1 9.8707 4.5130 -2.0145 48 1 12.1842 4.7578 -4.4050 49 1 7.7298 3.1760 1.6435 50 1 7.6762 4.9412 1.8651 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201800175.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:05 Heat of formation + Delta-G solvation = -56.129249 kcal Electronic energy + Delta-G solvation = -27291.014652 eV Core-core repulsion = 23547.100868 eV Total energy + Delta-G solvation = -3743.913784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.63760 -38.75668 -37.84163 -35.64096 -34.55774 -33.01429 -32.53628 -30.87939 -30.04509 -28.64360 -27.13324 -26.49183 -25.09343 -23.38082 -22.23950 -21.66732 -21.06361 -20.87295 -18.93728 -17.63559 -17.12997 -16.52627 -16.35868 -16.30294 -15.82104 -15.61357 -15.00678 -14.72305 -14.43089 -14.18282 -14.17806 -13.66721 -13.59129 -13.15234 -13.04276 -12.89269 -12.61411 -12.46105 -12.28420 -12.19269 -12.14242 -11.94827 -11.72201 -11.53025 -11.34684 -11.19670 -11.10811 -10.94783 -10.78005 -10.73575 -10.24712 -10.03532 -9.78380 -9.62508 -9.37145 -8.79354 -8.69163 -8.53504 -6.81243 -5.66277 -2.94289 2.54513 2.82410 3.50607 3.53965 3.55587 3.58758 3.98720 4.43307 4.56688 4.59557 4.65997 4.70900 4.73070 4.82786 4.88211 4.97091 5.10304 5.16411 5.20020 5.22606 5.27393 5.36215 5.37089 5.45914 5.49104 5.53465 5.58324 5.61868 5.64236 5.66661 5.67314 5.72274 5.86415 5.88348 5.99304 6.02385 6.12570 6.37414 6.52239 6.69765 6.69832 6.70974 6.82238 7.22453 7.76966 8.03665 8.10692 8.52239 9.63515 10.22337 10.58516 11.56676 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.018305 B = 0.002705 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.230759 B =10348.932349 C =10995.240345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 N -0.545 5.545 4 C 0.016 3.984 5 C 0.069 3.931 6 C -0.135 4.135 7 C 0.507 3.493 8 O -0.534 6.534 9 N -0.610 5.610 10 C 0.106 3.894 11 C -0.167 4.167 12 C 0.074 3.926 13 O -0.367 6.367 14 C 0.089 3.911 15 H 0.050 0.950 16 C 0.166 3.834 17 N -0.725 5.725 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.286 1.286 26 C 0.081 3.919 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.045 0.955 45 H 0.026 0.974 46 H 0.034 0.966 47 H 0.387 0.613 48 H 0.254 0.746 49 H 0.093 0.907 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.571 -1.179 9.371 27.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.269 5.269 4 C -0.132 4.132 5 C -0.059 4.059 6 C -0.176 4.176 7 C 0.295 3.705 8 O -0.410 6.410 9 N -0.344 5.344 10 C -0.017 4.017 11 C -0.206 4.206 12 C -0.003 4.003 13 O -0.285 6.285 14 C 0.029 3.971 15 H 0.068 0.932 16 C 0.038 3.962 17 N -0.369 5.369 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 C -0.043 4.043 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.052 0.948 47 H 0.221 0.779 48 H 0.064 0.936 49 H 0.111 0.889 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -25.139 -1.374 9.783 27.011 hybrid contribution 0.947 -0.433 -0.975 1.427 sum -24.193 -1.807 8.808 25.809 Atomic orbital electron populations 1.21806 0.94797 1.01576 1.02431 1.22084 0.96051 0.88623 1.01087 1.62023 1.13863 1.16195 1.34845 1.22509 1.01516 0.99340 0.89871 1.21834 0.86516 0.95477 1.02094 1.21671 0.92430 0.99234 1.04225 1.20723 0.90090 0.83292 0.76438 1.90734 1.66828 1.33193 1.50278 1.47959 1.08516 1.06813 1.71072 1.22009 0.94017 0.84612 1.01047 1.22518 1.01013 0.97713 0.99324 1.22103 0.83751 0.99089 0.95341 1.86444 1.26937 1.31958 1.83178 1.22244 0.97036 0.84796 0.92992 0.93210 1.20616 0.86523 0.98002 0.91074 1.42203 1.04227 1.85558 1.04960 1.19195 0.83212 1.40219 0.94170 0.91245 1.24738 0.97857 1.02888 0.95650 1.69675 1.34298 1.55445 0.98791 0.86251 0.85588 0.77793 0.76457 1.21321 1.21756 1.21312 1.22394 0.78836 1.03943 0.99116 0.92668 0.92293 0.91846 0.94749 0.90654 0.95416 0.91067 0.91254 0.93732 0.89908 0.88154 0.88973 0.91398 0.89910 0.89913 0.89693 0.89294 0.93681 0.95601 0.94816 0.77888 0.93594 0.88895 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.84 37.16 0.37 -0.56 16 2 C 0.05 0.39 5.68 -3.82 -0.02 0.36 16 3 N -0.54 -4.72 4.76 -242.91 -1.16 -5.87 16 4 C 0.02 0.12 9.13 60.07 0.55 0.67 16 5 C 0.07 0.70 4.25 -3.83 -0.02 0.68 16 6 C -0.14 -1.25 3.96 -27.89 -0.11 -1.36 16 7 C 0.51 6.65 7.63 -10.98 -0.08 6.57 16 8 O -0.53 -9.23 15.41 5.56 0.09 -9.14 16 9 N -0.61 -7.44 2.19 -172.52 -0.38 -7.82 16 10 C 0.11 0.90 6.00 -3.18 -0.02 0.88 16 11 C -0.17 -1.59 5.78 -27.18 -0.16 -1.74 16 12 C 0.07 0.98 6.37 36.42 0.23 1.21 16 13 O -0.37 -6.65 9.18 -26.56 -0.24 -6.90 16 14 C 0.09 1.64 2.73 -25.83 -0.07 1.56 16 15 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 16 C 0.17 3.62 5.95 -4.04 -0.02 3.60 16 17 N -0.73 -19.77 5.49 -59.91 -0.33 -20.10 16 18 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 19 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 20 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 21 N -0.93 -29.44 13.06 55.49 0.72 -28.72 16 22 Si 0.91 23.20 29.55 -169.99 -5.02 18.18 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 C 0.08 1.18 4.86 -3.89 -0.02 1.16 16 27 H 0.05 0.33 6.47 -51.92 -0.34 -0.01 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 31 H 0.07 0.58 7.93 -51.93 -0.41 0.17 16 32 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.46 6.30 -51.93 -0.33 0.13 16 34 H 0.07 0.46 6.47 -51.93 -0.34 0.13 16 35 H 0.04 0.53 8.08 -51.92 -0.42 0.11 16 36 H 0.08 0.91 7.89 -51.93 -0.41 0.50 16 37 H 0.10 0.77 8.04 -51.93 -0.42 0.36 16 38 H 0.09 0.73 5.82 -51.93 -0.30 0.43 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.53 5.87 -51.93 -0.31 0.23 16 41 H 0.08 0.88 8.01 -51.92 -0.42 0.46 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.04 0.59 7.40 -51.93 -0.38 0.21 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.39 11.23 7.53 -40.82 -0.31 10.92 16 48 H 0.25 7.72 8.31 -40.82 -0.34 7.39 16 49 H 0.09 1.45 7.27 -51.93 -0.38 1.07 16 50 H 0.08 1.10 8.11 -51.93 -0.42 0.67 16 LS Contribution 387.39 15.07 5.84 5.84 Total: -1.00 -34.93 387.39 -9.05 -43.98 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -8.94 Total: 5.20 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 0.38 Total: 5.35 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -1.14 Total: -62.51 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.16 Total: -16.04 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.93 -9.05 -43.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201800175.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.151 kcal (2) G-P(sol) polarization free energy of solvation -34.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds