Wall clock time and date at job start Fri Apr 10 2020 18:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47246 * 2 1 4 4 C 1.46908 * 110.99764 * 293.95111 * 3 2 1 5 5 C 1.46897 * 111.00203 * 169.99809 * 3 2 1 6 6 C 1.52992 * 109.47323 * 189.99823 * 5 3 2 7 7 C 1.50703 * 109.47349 * 179.97438 * 6 5 3 8 8 O 1.21275 * 120.00008 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00325 * 179.97438 * 7 6 5 10 10 C 1.47529 * 118.76747 * 359.97438 * 9 7 6 11 11 C 1.53570 * 111.02027 * 221.65852 * 10 9 7 12 12 C 1.51536 * 109.58321 * 39.96503 * 11 10 9 13 13 O 1.42153 * 108.75754 * 268.59376 * 12 11 10 14 14 C 1.38022 * 119.43546 * 87.22527 * 13 12 11 15 15 H 1.09005 * 109.46406 * 56.58271 * 14 13 12 16 16 C 1.53005 * 109.46731 * 176.57398 * 14 13 12 17 17 N 1.46498 * 109.47171 * 300.00830 * 16 14 13 18 18 C 1.36939 * 119.99947 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99831 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00187 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99759 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00050 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47121 * 60.00213 * 22 20 18 24 24 H 1.48504 * 109.47068 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47374 * 300.00073 * 22 20 18 26 26 C 1.45120 * 118.76151 * 180.02562 * 9 7 6 27 27 H 1.09007 * 109.46702 * 60.00074 * 1 2 3 28 28 H 1.08992 * 109.47201 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47093 * 300.00585 * 1 2 3 30 30 H 1.09001 * 109.47093 * 239.99415 * 2 1 3 31 31 H 1.08999 * 109.46707 * 119.99617 * 2 1 3 32 32 H 1.08998 * 109.47038 * 296.04681 * 4 3 2 33 33 H 1.08999 * 109.46741 * 56.05018 * 4 3 2 34 34 H 1.09002 * 109.46609 * 176.04578 * 4 3 2 35 35 H 1.09009 * 109.47082 * 69.99482 * 5 3 2 36 36 H 1.09000 * 109.47098 * 310.00089 * 5 3 2 37 37 H 1.09002 * 109.47605 * 60.00022 * 6 5 3 38 38 H 1.09000 * 109.47251 * 300.00172 * 6 5 3 39 39 H 1.08998 * 109.18053 * 101.25396 * 10 9 7 40 40 H 1.08999 * 109.11594 * 342.02071 * 10 9 7 41 41 H 1.09007 * 109.44618 * 279.93069 * 11 10 9 42 42 H 1.08999 * 109.45275 * 160.00343 * 11 10 9 43 43 H 1.08995 * 109.58714 * 148.81227 * 12 11 10 44 44 H 1.09001 * 109.58774 * 28.37806 * 12 11 10 45 45 H 1.08998 * 109.46645 * 60.00629 * 16 14 13 46 46 H 1.08999 * 109.46670 * 180.02562 * 16 14 13 47 47 H 0.96997 * 120.00294 * 0.02562 * 17 16 14 48 48 H 0.97005 * 119.99747 * 180.02562 * 21 20 18 49 49 H 1.09002 * 109.45898 * 330.66960 * 26 9 7 50 50 H 1.09004 * 109.45772 * 210.69998 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0669 -1.2534 5 6 3.4685 1.4311 0.2382 6 6 3.8999 2.8791 0.4791 7 6 5.3861 2.9264 0.7241 8 8 6.0364 1.9028 0.7071 9 7 5.9929 4.1062 0.9609 10 6 5.1762 5.3347 0.9737 11 6 5.8977 6.4834 0.2537 12 6 6.5930 5.9507 -0.9828 13 8 7.9210 5.5800 -0.6366 14 6 8.1665 4.3113 -0.1517 15 1 7.8111 3.5727 -0.8703 16 6 9.6704 4.1302 0.0643 17 7 10.3719 4.3107 -1.2090 18 6 11.7353 4.1950 -1.2620 19 1 12.2935 3.9703 -0.3651 20 6 12.4000 4.3656 -2.4686 21 7 11.7197 4.6390 -3.5617 22 14 14.2598 4.2071 -2.5409 23 1 14.6581 2.8457 -2.1014 24 1 14.7221 4.4329 -3.9340 25 1 14.8781 5.2172 -1.6449 26 6 7.4254 4.1206 1.1928 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.1770 1.5789 -2.0860 33 1 0.5920 2.0179 -1.4052 34 1 1.9825 3.1098 -1.1988 35 1 3.9926 1.0358 -0.6321 36 1 3.7122 0.8290 1.1135 37 1 3.3759 3.2744 1.3493 38 1 3.6562 3.4812 -0.3962 39 1 4.9823 5.6252 2.0062 40 1 4.2280 5.1382 0.4732 41 1 6.6358 6.9248 0.9235 42 1 5.1716 7.2427 -0.0368 43 1 6.6179 6.7245 -1.7500 44 1 6.0561 5.0791 -1.3571 45 1 10.0257 4.8688 0.7828 46 1 9.8643 3.1281 0.4468 47 1 9.8707 4.5130 -2.0145 48 1 12.1842 4.7578 -4.4050 49 1 7.7298 3.1760 1.6435 50 1 7.6762 4.9412 1.8651 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201800175.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:05 Heat of formation + Delta-G solvation = -81.400625 kcal Electronic energy + Delta-G solvation = -27292.110501 eV Core-core repulsion = 23547.100868 eV Total energy + Delta-G solvation = -3745.009633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.71290 -39.89074 -38.64044 -36.92368 -36.23892 -34.39571 -33.40496 -32.66094 -30.90167 -29.89586 -28.13216 -27.34951 -26.58326 -24.83864 -23.52239 -22.67799 -22.29934 -21.72542 -19.89610 -19.27385 -18.56433 -17.77150 -17.56068 -17.26978 -16.69063 -16.57938 -16.39744 -16.01250 -15.56949 -15.20749 -15.12144 -15.02047 -14.80936 -14.52179 -14.46301 -13.92249 -13.73617 -13.58078 -13.29274 -13.17764 -13.07567 -12.82751 -12.74056 -12.69176 -12.62109 -12.34676 -12.25448 -12.16846 -12.04270 -11.86383 -11.79664 -11.75545 -11.46925 -10.98261 -10.87733 -10.55812 -9.65764 -9.39778 -9.02928 -7.95268 -5.25330 1.45274 1.50282 1.53648 1.56247 1.88786 2.55342 2.71639 2.88370 3.37724 3.59014 3.63917 3.83016 3.86622 3.96033 4.04478 4.06859 4.12408 4.16923 4.27506 4.30924 4.37945 4.45658 4.50477 4.52539 4.55309 4.60891 4.61987 4.69300 4.76493 4.84100 4.86880 4.89625 4.91302 4.99078 5.02512 5.08200 5.12880 5.13401 5.20905 5.36661 5.45332 5.52285 5.99077 6.05600 6.24970 6.27720 6.74725 7.10582 7.31272 8.05494 8.31105 9.28525 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.018305 B = 0.002705 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.230759 B =10348.932349 C =10995.240345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.044 3.956 3 N -0.541 5.541 4 C 0.013 3.987 5 C 0.073 3.927 6 C -0.122 4.122 7 C 0.500 3.500 8 O -0.586 6.586 9 N -0.609 5.609 10 C 0.100 3.900 11 C -0.157 4.157 12 C 0.064 3.936 13 O -0.397 6.397 14 C 0.106 3.894 15 H 0.017 0.983 16 C 0.162 3.838 17 N -0.740 5.740 18 C -0.249 4.249 19 H 0.078 0.922 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.981 3.019 23 H -0.277 1.277 24 H -0.293 1.293 25 H -0.275 1.275 26 C 0.094 3.906 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.016 0.984 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.017 0.983 36 H 0.069 0.931 37 H 0.129 0.871 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.073 0.927 42 H 0.122 0.878 43 H 0.094 0.906 44 H 0.042 0.958 45 H 0.033 0.967 46 H 0.033 0.967 47 H 0.374 0.626 48 H 0.252 0.748 49 H 0.078 0.922 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.487 0.220 10.707 29.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.084 4.084 3 N -0.266 5.266 4 C -0.135 4.135 5 C -0.056 4.056 6 C -0.161 4.161 7 C 0.290 3.710 8 O -0.466 6.466 9 N -0.341 5.341 10 C -0.020 4.020 11 C -0.195 4.195 12 C -0.012 4.012 13 O -0.316 6.316 14 C 0.046 3.954 15 H 0.035 0.965 16 C 0.035 3.965 17 N -0.382 5.382 18 C -0.381 4.381 19 H 0.096 0.904 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.809 3.191 23 H -0.203 1.203 24 H -0.219 1.219 25 H -0.201 1.201 26 C -0.031 4.031 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.034 0.966 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.036 0.964 36 H 0.088 0.912 37 H 0.146 0.854 38 H 0.131 0.869 39 H 0.113 0.887 40 H 0.130 0.870 41 H 0.092 0.908 42 H 0.140 0.860 43 H 0.112 0.888 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.051 0.949 47 H 0.205 0.795 48 H 0.060 0.940 49 H 0.096 0.904 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -27.100 0.052 11.167 29.311 hybrid contribution 1.476 -0.853 -1.400 2.206 sum -25.624 -0.801 9.766 27.434 Atomic orbital electron populations 1.21757 0.93208 1.02330 1.02628 1.22174 0.97326 0.88285 1.00594 1.62094 1.12360 1.16627 1.35494 1.22606 1.02332 0.99727 0.88836 1.21715 0.87425 0.96025 1.00392 1.21641 0.89405 0.98886 1.06193 1.21461 0.91587 0.82709 0.75246 1.90714 1.68222 1.35132 1.52561 1.48080 1.07582 1.08158 1.70246 1.22368 0.94133 0.82484 1.03030 1.22439 1.01303 0.98677 0.97052 1.22414 0.81927 0.99168 0.97705 1.86363 1.30286 1.31276 1.83701 1.21843 0.94885 0.84346 0.94334 0.96502 1.20762 0.88912 0.97854 0.88976 1.42404 1.03946 1.85603 1.06273 1.19657 0.84447 1.39401 0.94593 0.90433 1.25675 1.02964 1.03181 0.95281 1.69855 1.36179 1.56931 0.99231 0.85108 0.79474 0.78203 0.76333 1.20330 1.21941 1.20052 1.22057 0.80392 1.03841 0.96772 0.92209 0.91356 0.91776 0.95586 0.90955 0.96560 0.89667 0.89935 0.96448 0.91216 0.85352 0.86894 0.88712 0.86972 0.90831 0.86006 0.88822 0.93986 0.94889 0.94950 0.79481 0.93975 0.90357 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.84 71.98 0.71 -0.83 16 2 C 0.04 0.66 5.68 86.30 0.49 1.15 16 3 N -0.54 -8.62 4.76 -922.44 -4.39 -13.01 16 4 C 0.01 0.17 9.13 127.69 1.17 1.33 16 5 C 0.07 1.46 4.25 86.30 0.37 1.83 16 6 C -0.12 -1.98 3.96 29.85 0.12 -1.86 16 7 C 0.50 12.78 7.63 87.66 0.67 13.45 16 8 O -0.59 -21.02 15.41 -3.01 -0.05 -21.07 16 9 N -0.61 -13.86 2.19 -818.14 -1.79 -15.65 16 10 C 0.10 1.31 6.00 86.37 0.52 1.83 16 11 C -0.16 -2.44 5.78 30.31 0.18 -2.27 16 12 C 0.06 1.61 6.37 71.50 0.46 2.07 16 13 O -0.40 -14.55 9.18 -117.95 -1.08 -15.64 16 14 C 0.11 4.00 2.73 31.17 0.09 4.09 16 15 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 16 C 0.16 7.29 5.95 86.38 0.51 7.81 16 17 N -0.74 -41.70 5.49 -343.45 -1.89 -43.59 16 18 C -0.25 -14.94 9.99 84.03 0.84 -14.10 16 19 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 20 C -0.08 -4.80 5.50 84.86 0.47 -4.34 16 21 N -0.97 -62.77 13.06 21.65 0.28 -62.49 16 22 Si 0.98 48.19 29.55 68.60 2.03 50.22 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 24 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 25 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 26 C 0.09 2.72 4.86 87.22 0.42 3.15 16 27 H 0.06 0.59 6.47 -2.38 -0.02 0.58 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.03 0.43 8.12 -2.39 -0.02 0.41 16 31 H 0.07 1.11 7.93 -2.39 -0.02 1.09 16 32 H 0.02 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.08 0.88 6.30 -2.39 -0.02 0.86 16 34 H 0.08 0.84 6.47 -2.39 -0.02 0.83 16 35 H 0.02 0.43 8.08 -2.38 -0.02 0.41 16 36 H 0.07 1.56 7.89 -2.39 -0.02 1.54 16 37 H 0.13 1.45 8.04 -2.39 -0.02 1.43 16 38 H 0.11 1.41 5.82 -2.39 -0.01 1.39 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.11 0.85 5.87 -2.39 -0.01 0.84 16 41 H 0.07 1.34 8.01 -2.38 -0.02 1.32 16 42 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.04 1.07 7.40 -2.39 -0.02 1.06 16 45 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.37 22.67 7.53 -92.71 -0.70 21.97 16 48 H 0.25 15.63 8.31 -92.70 -0.77 14.86 16 49 H 0.08 2.50 7.27 -2.39 -0.02 2.49 16 50 H 0.10 2.55 8.11 -2.39 -0.02 2.53 16 Total: -1.00 -79.27 387.39 0.32 -78.96 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: 0.21 Total: 28.97 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 7.00 Total: 13.30 kcal Atomic # 7 Polarization: -126.95 SS G_CDS: -7.79 Total: -134.74 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -1.13 Total: -36.71 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Total: -79.27 0.32 -78.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201800175.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.442 kcal (2) G-P(sol) polarization free energy of solvation -79.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds