Wall clock time and date at job start Fri Apr 10 2020 18:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47309 * 2 1 4 4 N 1.46907 * 109.47204 * 180.02562 * 3 2 1 5 5 C 1.46898 * 111.00031 * 293.95440 * 4 3 2 6 6 C 1.46902 * 111.00009 * 169.99895 * 4 3 2 7 7 C 1.50696 * 109.46762 * 190.00080 * 6 4 3 8 8 O 1.21274 * 120.00258 * 0.02562 * 7 6 4 9 9 N 1.34785 * 119.99350 * 180.02562 * 7 6 4 10 10 C 1.47502 * 118.76164 * 359.97438 * 9 7 6 11 11 C 1.53575 * 111.02725 * 138.39151 * 10 9 7 12 12 C 1.51532 * 109.57901 * 320.02191 * 11 10 9 13 13 O 1.42155 * 108.75773 * 91.40132 * 12 11 10 14 14 C 1.38015 * 119.43670 * 272.77231 * 13 12 11 15 15 H 1.08998 * 109.47599 * 303.42257 * 14 13 12 16 16 C 1.53007 * 109.46708 * 183.42826 * 14 13 12 17 17 N 1.46499 * 109.46767 * 65.00551 * 16 14 13 18 18 C 1.36939 * 119.99642 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99986 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99813 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00193 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00027 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47313 * 89.99414 * 22 20 18 24 24 H 1.48501 * 109.47152 * 209.99884 * 22 20 18 25 25 H 1.48501 * 109.47142 * 329.99873 * 22 20 18 26 26 C 1.45121 * 118.75251 * 180.02562 * 9 7 6 27 27 H 1.08998 * 109.46914 * 300.00160 * 1 2 3 28 28 H 1.09002 * 109.47439 * 59.99733 * 1 2 3 29 29 H 1.08997 * 109.47418 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46736 * 240.00258 * 2 1 3 31 31 H 1.09002 * 109.47439 * 120.00267 * 2 1 3 32 32 H 1.08998 * 109.47263 * 60.00054 * 3 2 1 33 33 H 1.08999 * 109.47123 * 299.99945 * 3 2 1 34 34 H 1.09000 * 109.47031 * 296.04434 * 5 4 3 35 35 H 1.08999 * 109.47033 * 56.04239 * 5 4 3 36 36 H 1.08999 * 109.46951 * 176.04536 * 5 4 3 37 37 H 1.09005 * 109.46908 * 70.00065 * 6 4 3 38 38 H 1.09007 * 109.47093 * 310.00280 * 6 4 3 39 39 H 1.09008 * 109.16307 * 18.00006 * 10 9 7 40 40 H 1.08994 * 109.12897 * 258.76654 * 10 9 7 41 41 H 1.09003 * 109.45246 * 199.98725 * 11 10 9 42 42 H 1.09002 * 109.42864 * 80.04527 * 11 10 9 43 43 H 1.08997 * 109.59067 * 331.61691 * 12 11 10 44 44 H 1.08996 * 109.58948 * 211.17839 * 12 11 10 45 45 H 1.09004 * 109.46896 * 185.00312 * 16 14 13 46 46 H 1.08996 * 109.47292 * 305.00551 * 16 14 13 47 47 H 0.96992 * 120.00403 * 359.97438 * 17 16 14 48 48 H 0.97001 * 120.00030 * 180.02562 * 21 20 18 49 49 H 1.09003 * 109.46596 * 29.28847 * 26 9 7 50 50 H 1.09007 * 109.46152 * 149.26292 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 4.0360 0.8854 1.2524 6 6 4.0354 2.7930 -0.2388 7 6 5.5216 2.7181 -0.4768 8 8 6.0866 1.6453 -0.4510 9 7 6.2229 3.8436 -0.7183 10 6 5.5080 5.1335 -0.7440 11 6 6.3166 6.2259 -0.0289 12 6 6.9610 5.6485 1.2151 13 8 8.2563 5.1692 0.8784 14 6 8.4008 3.8811 0.4043 15 1 7.9838 3.1792 1.1263 16 6 9.8861 3.5776 0.1973 17 7 10.5726 3.5935 1.4914 18 6 11.9180 3.3463 1.5558 19 1 12.4728 3.1392 0.6527 20 6 12.5684 3.3608 2.7821 21 7 11.8921 3.6127 3.8828 22 14 14.4037 3.0244 2.8699 23 1 15.1482 4.3028 2.7399 24 1 14.7293 2.3922 4.1736 25 1 14.7928 2.1106 1.7659 26 6 7.6526 3.7402 -0.9443 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.7453 1.5257 2.0852 35 1 3.6304 -0.1148 1.4043 36 1 5.1233 0.8321 1.1973 37 1 3.8379 3.4187 0.6317 38 1 3.5485 3.2237 -1.1139 39 1 4.5444 5.0186 -0.2474 40 1 5.3435 5.4302 -1.7798 41 1 5.6527 7.0435 0.2523 42 1 7.0908 6.6008 -0.6983 43 1 6.3538 4.8261 1.5931 44 1 7.0449 6.4238 1.9767 45 1 9.9957 2.5942 -0.2600 46 1 10.3238 4.3328 -0.4555 47 1 10.0743 3.7791 2.3026 48 1 12.3467 3.6232 4.7396 49 1 7.8812 2.7708 -1.3873 50 1 7.9716 4.5330 -1.6210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201924828.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:08 Heat of formation + Delta-G solvation = -51.976502 kcal Electronic energy + Delta-G solvation = -27501.434703 eV Core-core repulsion = 23757.700996 eV Total energy + Delta-G solvation = -3743.733707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.65760 -38.82131 -37.39486 -35.62600 -34.56328 -33.50957 -32.79829 -30.89243 -29.70841 -27.95102 -27.23354 -26.55446 -25.04583 -23.51931 -22.34447 -21.68147 -21.05141 -20.87873 -19.00169 -17.53707 -17.11882 -16.61420 -16.38063 -16.21649 -15.67451 -15.59082 -15.01927 -14.65954 -14.45947 -14.30757 -13.97446 -13.78256 -13.47829 -13.15311 -13.04487 -12.84996 -12.62354 -12.51303 -12.27633 -12.14284 -11.99268 -11.91324 -11.65288 -11.54397 -11.36853 -11.35449 -10.94736 -10.85718 -10.75669 -10.75500 -10.23582 -9.99097 -9.71614 -9.62043 -9.37785 -8.79829 -8.56558 -8.49693 -6.81427 -5.66506 -2.94472 2.57491 2.77632 3.50187 3.54579 3.56782 3.66608 3.97515 4.32215 4.56505 4.58007 4.65040 4.69721 4.72301 4.89020 4.90887 4.97595 5.06255 5.15570 5.20158 5.27157 5.33334 5.36377 5.37887 5.44630 5.46319 5.49611 5.50603 5.63384 5.66846 5.71008 5.83677 5.85187 5.93493 5.97770 6.02246 6.11386 6.12532 6.37039 6.51397 6.68783 6.70727 6.80909 6.82557 7.26045 7.77746 8.02900 8.17903 8.51860 9.63256 10.21781 10.57638 11.56549 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.017507 B = 0.002878 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.952347 B = 9725.289762 C =10632.283505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.055 3.945 4 N -0.526 5.526 5 C 0.015 3.985 6 C 0.038 3.962 7 C 0.507 3.493 8 O -0.512 6.512 9 N -0.612 5.612 10 C 0.106 3.894 11 C -0.167 4.167 12 C 0.074 3.926 13 O -0.368 6.368 14 C 0.089 3.911 15 H 0.051 0.949 16 C 0.166 3.834 17 N -0.726 5.726 18 C -0.236 4.236 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.933 5.933 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.082 3.918 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.020 0.980 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.044 0.956 44 H 0.089 0.911 45 H 0.035 0.965 46 H 0.027 0.973 47 H 0.386 0.614 48 H 0.254 0.746 49 H 0.094 0.906 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.159 1.968 -9.859 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.072 4.072 4 N -0.250 5.250 5 C -0.133 4.133 6 C -0.094 4.094 7 C 0.294 3.706 8 O -0.386 6.386 9 N -0.347 5.347 10 C -0.017 4.017 11 C -0.205 4.205 12 C -0.002 4.002 13 O -0.286 6.286 14 C 0.029 3.971 15 H 0.069 0.931 16 C 0.038 3.962 17 N -0.370 5.370 18 C -0.367 4.367 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.582 5.582 22 Si 0.739 3.261 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.041 4.041 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.039 0.961 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.063 0.937 44 H 0.107 0.893 45 H 0.053 0.947 46 H 0.045 0.955 47 H 0.220 0.780 48 H 0.064 0.936 49 H 0.112 0.888 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -24.371 1.153 -10.272 26.472 hybrid contribution 0.198 0.456 0.979 1.098 sum -24.172 1.609 -9.293 25.947 Atomic orbital electron populations 1.21736 0.95598 1.01843 1.01667 1.21541 0.95225 0.96180 1.03074 1.22205 0.86682 0.97717 1.00642 1.61671 1.07066 1.19689 1.36557 1.22635 1.03219 0.99445 0.87997 1.22042 0.93395 0.91595 1.02326 1.20561 0.89139 0.83947 0.76962 1.90705 1.71173 1.27895 1.48809 1.47960 1.08545 1.06607 1.71610 1.21985 0.95297 0.83417 1.00978 1.22516 1.00755 0.97936 0.99326 1.22091 0.84804 0.98041 0.95308 1.86437 1.28144 1.30372 1.83685 1.22281 0.97566 0.84120 0.93105 0.93131 1.20613 0.87000 0.97836 0.90773 1.42228 1.06561 1.85397 1.02829 1.19239 0.84773 1.39676 0.92997 0.91167 1.24739 0.98000 1.02959 0.95466 1.69679 1.34791 1.56345 0.97406 0.86176 0.85452 0.77710 0.76786 1.21792 1.21850 1.20774 1.22413 0.78679 1.03981 0.99038 0.92900 0.92708 0.92466 0.90956 0.91734 0.94868 0.90863 0.96135 0.91058 0.89095 0.92053 0.88100 0.90273 0.91403 0.89744 0.89856 0.93721 0.89336 0.94738 0.95507 0.77994 0.93643 0.88805 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.94 5.86 -26.74 -0.16 -1.10 16 3 C 0.06 0.45 4.96 -3.82 -0.02 0.43 16 4 N -0.53 -5.75 4.50 -244.37 -1.10 -6.85 16 5 C 0.01 0.17 9.01 60.06 0.54 0.71 16 6 C 0.04 0.37 3.78 -4.98 -0.02 0.35 16 7 C 0.51 6.82 7.35 -10.98 -0.08 6.74 16 8 O -0.51 -9.02 13.74 5.56 0.08 -8.94 16 9 N -0.61 -7.48 2.19 -172.43 -0.38 -7.85 16 10 C 0.11 0.89 6.00 -3.20 -0.02 0.87 16 11 C -0.17 -1.55 5.79 -27.18 -0.16 -1.71 16 12 C 0.07 0.97 6.37 36.41 0.23 1.21 16 13 O -0.37 -6.59 9.38 -26.54 -0.25 -6.84 16 14 C 0.09 1.62 2.68 -25.75 -0.07 1.55 16 15 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 16 C 0.17 3.60 5.92 -4.04 -0.02 3.58 16 17 N -0.73 -19.73 5.54 -59.90 -0.33 -20.06 16 18 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 19 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 20 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 21 N -0.93 -29.42 13.06 55.49 0.72 -28.69 16 22 Si 0.91 23.20 29.55 -169.99 -5.02 18.18 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 C 0.08 1.20 4.87 -3.80 -0.02 1.18 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.52 6.47 -51.93 -0.34 0.19 16 32 H 0.03 0.25 8.12 -51.93 -0.42 -0.17 16 33 H 0.07 0.51 7.93 -51.93 -0.41 0.10 16 34 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.76 6.30 -51.93 -0.33 0.43 16 36 H 0.09 1.35 5.88 -51.93 -0.31 1.04 16 37 H 0.06 0.52 7.39 -51.93 -0.38 0.14 16 38 H 0.10 0.76 7.83 -51.93 -0.41 0.35 16 39 H 0.08 0.50 5.88 -51.92 -0.31 0.19 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.86 8.01 -51.93 -0.42 0.45 16 43 H 0.04 0.59 7.40 -51.93 -0.38 0.20 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.39 11.17 7.65 -40.82 -0.31 10.86 16 48 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 49 H 0.09 1.47 7.27 -51.93 -0.38 1.10 16 50 H 0.08 1.08 8.11 -51.93 -0.42 0.66 16 LS Contribution 387.24 15.07 5.84 5.84 Total: -1.00 -35.06 387.24 -9.12 -44.17 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -9.01 Total: 5.41 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 0.33 Total: 5.64 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -1.08 Total: -63.45 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.17 Total: -15.78 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.06 -9.12 -44.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201924828.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.802 kcal (2) G-P(sol) polarization free energy of solvation -35.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds