Wall clock time and date at job start Fri Apr 10 2020 18:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47543 * 2 1 4 4 N 1.46899 * 109.47201 * 180.02562 * 3 2 1 5 5 C 1.46902 * 110.99869 * 293.95597 * 4 3 2 6 6 C 1.46903 * 110.99875 * 170.00308 * 4 3 2 7 7 C 1.50697 * 109.47010 * 190.00041 * 6 4 3 8 8 O 1.21285 * 120.00121 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00019 * 179.97438 * 7 6 4 10 10 C 1.47503 * 118.75848 * 0.02562 * 9 7 6 11 11 C 1.53573 * 111.03106 * 221.62609 * 10 9 7 12 12 C 1.51534 * 109.58000 * 39.97757 * 11 10 9 13 13 O 1.42158 * 108.76478 * 268.60478 * 12 11 10 14 14 C 1.38013 * 119.44261 * 87.21486 * 13 12 11 15 15 H 1.09006 * 109.46188 * 56.58118 * 14 13 12 16 16 C 1.52992 * 109.47331 * 176.57427 * 14 13 12 17 17 N 1.46498 * 109.47364 * 300.00645 * 16 14 13 18 18 C 1.36935 * 120.00239 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 16 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72253 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72375 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72186 * 22 20 18 26 26 C 1.45128 * 118.76018 * 179.97438 * 9 7 6 27 27 H 1.09000 * 109.47565 * 59.99160 * 1 2 3 28 28 H 1.08993 * 109.47416 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46785 * 300.00137 * 1 2 3 30 30 H 1.09007 * 109.46785 * 239.99863 * 2 1 3 31 31 H 1.08999 * 109.47075 * 120.00658 * 2 1 3 32 32 H 1.09003 * 109.46706 * 60.00206 * 3 2 1 33 33 H 1.08994 * 109.47008 * 300.00362 * 3 2 1 34 34 H 1.09004 * 109.47241 * 296.04392 * 5 4 3 35 35 H 1.08999 * 109.47165 * 56.05048 * 5 4 3 36 36 H 1.09004 * 109.46749 * 176.04711 * 5 4 3 37 37 H 1.08998 * 109.47315 * 69.99610 * 6 4 3 38 38 H 1.09000 * 109.46967 * 309.99619 * 6 4 3 39 39 H 1.09000 * 109.17026 * 101.22810 * 10 9 7 40 40 H 1.09005 * 109.12501 * 341.99865 * 10 9 7 41 41 H 1.08996 * 109.45317 * 279.94702 * 11 10 9 42 42 H 1.08998 * 109.43830 * 159.99622 * 11 10 9 43 43 H 1.08997 * 109.59307 * 148.82034 * 12 11 10 44 44 H 1.09005 * 109.59141 * 28.38382 * 12 11 10 45 45 H 1.09001 * 109.47602 * 180.02562 * 16 14 13 46 46 H 1.09001 * 109.46922 * 60.00663 * 16 14 13 47 47 H 0.97004 * 119.99747 * 0.02562 * 17 16 14 48 48 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 49 49 H 1.09004 * 109.45500 * 330.69024 * 26 9 7 50 50 H 1.09003 * 109.46183 * 210.73181 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 4.0360 0.8853 1.2524 6 6 4.0355 2.7930 -0.2387 7 6 5.5216 2.7182 -0.4767 8 8 6.0868 1.6454 -0.4501 9 7 6.2228 3.8433 -0.7191 10 6 5.5080 5.1333 -0.7447 11 6 6.0066 6.0170 -1.8975 12 6 6.2407 5.1631 -3.1273 13 8 7.5919 4.7213 -3.1268 14 6 7.9260 3.5610 -2.4583 15 1 7.3255 2.7357 -2.8409 16 6 9.4094 3.2561 -2.6760 17 7 9.6681 3.0866 -4.1079 18 6 10.9346 2.8057 -4.5463 19 1 11.7427 2.7088 -3.8364 20 6 11.1799 2.6455 -5.9032 21 7 10.1940 2.7583 -6.7679 22 14 12.9074 2.2617 -6.5012 23 1 12.9020 2.1329 -7.9806 24 1 13.8245 3.3599 -6.1032 25 1 13.3692 0.9871 -5.8951 26 6 7.6528 3.7402 -0.9440 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.7453 1.5256 2.0853 35 1 3.6304 -0.1150 1.4042 36 1 5.1233 0.8320 1.1973 37 1 3.8379 3.4187 0.6317 38 1 3.5486 3.2236 -1.1137 39 1 5.6713 5.6519 0.2001 40 1 4.4413 4.9481 -0.8713 41 1 6.9400 6.4994 -1.6076 42 1 5.2588 6.7778 -2.1210 43 1 6.0495 5.7529 -4.0237 44 1 5.5743 4.3007 -3.1057 45 1 9.6732 2.3395 -2.1484 46 1 10.0099 4.0815 -2.2935 47 1 8.9423 3.1740 -4.7456 48 1 9.2968 2.9572 -6.4574 49 1 8.0450 2.8813 -0.3993 50 1 8.1424 4.6480 -0.5914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201924829.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:11 Heat of formation + Delta-G solvation = -51.539835 kcal Electronic energy + Delta-G solvation = -27496.667516 eV Core-core repulsion = 23752.952744 eV Total energy + Delta-G solvation = -3743.714772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.71463 -38.89069 -37.44689 -35.71240 -34.74526 -33.55159 -32.94485 -30.85738 -29.70328 -27.89346 -27.27631 -26.58028 -24.88048 -23.45878 -22.45241 -21.75914 -21.09926 -20.97520 -19.05999 -17.58169 -17.23281 -16.65062 -16.43193 -16.32029 -15.94751 -15.31482 -15.14964 -15.08320 -14.39869 -14.07311 -14.02940 -13.82315 -13.61011 -13.41463 -13.11916 -12.93719 -12.72055 -12.59813 -12.37222 -12.16716 -12.05270 -11.99998 -11.66255 -11.59828 -11.41201 -11.34788 -11.00587 -10.87560 -10.64121 -10.47651 -10.29324 -9.91260 -9.75125 -9.44473 -9.10584 -8.78253 -8.64346 -8.51821 -6.86960 -5.98784 -2.96631 2.51264 2.72303 3.58565 3.60557 3.63297 3.80350 3.91259 4.27118 4.52207 4.55069 4.62965 4.68312 4.76524 4.85853 4.86662 4.90942 5.03533 5.12380 5.14598 5.20067 5.28638 5.29739 5.30807 5.39667 5.41956 5.44006 5.45406 5.57188 5.69379 5.72397 5.79189 5.81520 5.88435 5.93361 5.95103 6.02433 6.05813 6.19270 6.44856 6.63316 6.64780 6.75637 6.76038 7.20067 7.89817 7.96770 8.11883 8.88611 9.36535 10.23077 10.39260 11.50363 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.016667 B = 0.002855 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.530346 B = 9804.421306 C =10516.187846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.056 3.944 4 N -0.526 5.526 5 C 0.017 3.983 6 C 0.038 3.962 7 C 0.507 3.493 8 O -0.512 6.512 9 N -0.612 5.612 10 C 0.106 3.894 11 C -0.167 4.167 12 C 0.073 3.927 13 O -0.370 6.370 14 C 0.088 3.912 15 H 0.051 0.949 16 C 0.172 3.828 17 N -0.737 5.737 18 C -0.328 4.328 19 H 0.064 0.936 20 C -0.047 4.047 21 N -0.945 5.945 22 Si 1.081 2.919 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.296 1.296 26 C 0.084 3.916 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.018 0.982 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.035 0.965 46 H 0.026 0.974 47 H 0.370 0.630 48 H 0.255 0.745 49 H 0.093 0.907 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.533 4.178 18.215 27.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.072 4.072 4 N -0.250 5.250 5 C -0.131 4.131 6 C -0.093 4.093 7 C 0.294 3.706 8 O -0.386 6.386 9 N -0.347 5.347 10 C -0.016 4.016 11 C -0.205 4.205 12 C -0.004 4.004 13 O -0.288 6.288 14 C 0.028 3.972 15 H 0.069 0.931 16 C 0.044 3.956 17 N -0.382 5.382 18 C -0.459 4.459 19 H 0.082 0.918 20 C -0.245 4.245 21 N -0.591 5.591 22 Si 0.912 3.088 23 H -0.211 1.211 24 H -0.223 1.223 25 H -0.223 1.223 26 C -0.040 4.040 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.037 0.963 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.044 0.956 47 H 0.204 0.796 48 H 0.067 0.933 49 H 0.111 0.889 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.805 3.080 16.579 25.258 hybrid contribution -1.754 0.923 2.132 2.911 sum -20.559 4.003 18.711 28.086 Atomic orbital electron populations 1.21736 0.95547 1.01887 1.01679 1.21544 0.95282 0.96121 1.03092 1.22208 0.86520 0.97796 1.00677 1.61639 1.07191 1.19753 1.36399 1.22614 1.03024 0.99442 0.88023 1.22034 0.93356 0.91561 1.02338 1.20583 0.89202 0.83905 0.76934 1.90706 1.71001 1.27689 1.49232 1.47968 1.08641 1.06796 1.71328 1.21987 0.96264 0.84130 0.99263 1.22508 1.03203 0.98860 0.95930 1.22119 0.84146 0.96980 0.97123 1.86429 1.25961 1.42378 1.73990 1.22303 0.98252 0.86908 0.89747 0.93135 1.20543 0.89189 0.97712 0.88158 1.42205 1.08534 1.86703 1.00788 1.20033 0.86576 1.45315 0.94025 0.91830 1.25771 1.06088 1.00917 0.91703 1.70848 1.00913 1.51964 1.35391 0.83228 0.73742 0.75732 0.76059 1.21086 1.22340 1.22319 1.22395 0.79671 1.03655 0.98272 0.92607 0.92427 0.92972 0.90826 0.91832 0.94919 0.90749 0.96335 0.91070 0.89295 0.92115 0.88005 0.91461 0.90202 0.89881 0.89649 0.89273 0.93510 0.94733 0.95591 0.79621 0.93335 0.88881 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.96 5.86 -26.73 -0.16 -1.11 16 3 C 0.06 0.45 4.96 -3.83 -0.02 0.43 16 4 N -0.53 -5.68 4.50 -244.37 -1.10 -6.78 16 5 C 0.02 0.18 9.01 60.07 0.54 0.72 16 6 C 0.04 0.37 3.78 -4.98 -0.02 0.35 16 7 C 0.51 6.77 7.36 -10.99 -0.08 6.69 16 8 O -0.51 -8.96 13.74 5.55 0.08 -8.88 16 9 N -0.61 -7.45 2.19 -172.40 -0.38 -7.83 16 10 C 0.11 0.89 6.00 -3.20 -0.02 0.87 16 11 C -0.17 -1.55 5.79 -27.18 -0.16 -1.71 16 12 C 0.07 0.96 6.37 36.42 0.23 1.19 16 13 O -0.37 -6.67 9.18 -26.53 -0.24 -6.91 16 14 C 0.09 1.62 2.74 -25.73 -0.07 1.55 16 15 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 16 C 0.17 3.82 5.95 -4.05 -0.02 3.80 16 17 N -0.74 -20.25 5.49 -59.91 -0.33 -20.58 16 18 C -0.33 -9.87 9.99 -15.06 -0.15 -10.02 16 19 H 0.06 1.86 7.83 -52.48 -0.41 1.45 16 20 C -0.05 -1.45 5.50 -17.43 -0.10 -1.55 16 21 N -0.95 -30.74 13.70 55.49 0.76 -29.98 16 22 Si 1.08 27.08 29.92 -169.99 -5.09 21.99 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 26 C 0.08 1.22 4.87 -3.77 -0.02 1.20 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.50 6.47 -51.93 -0.34 0.16 16 32 H 0.03 0.24 8.12 -51.93 -0.42 -0.19 16 33 H 0.07 0.55 7.93 -51.93 -0.41 0.14 16 34 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 35 H 0.07 0.68 6.30 -51.93 -0.33 0.36 16 36 H 0.09 1.16 5.88 -51.93 -0.31 0.86 16 37 H 0.06 0.47 8.02 -51.93 -0.42 0.05 16 38 H 0.10 0.83 7.20 -51.93 -0.37 0.46 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.49 5.87 -51.93 -0.30 0.19 16 41 H 0.08 0.87 8.01 -51.93 -0.42 0.46 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.62 7.40 -51.93 -0.38 0.23 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.37 10.56 6.36 -40.82 -0.26 10.30 16 48 H 0.26 8.26 6.77 -40.82 -0.28 7.99 16 49 H 0.09 1.45 7.27 -51.93 -0.38 1.08 16 50 H 0.08 1.09 8.11 -51.93 -0.42 0.67 16 LS Contribution 385.26 15.07 5.81 5.81 Total: -1.00 -36.53 385.26 -9.05 -45.58 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -8.89 Total: 5.73 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 0.33 Total: 1.85 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: -1.05 Total: -65.17 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.17 Total: -15.80 kcal Atomic # 14 Polarization: 27.08 SS G_CDS: -5.09 Total: 21.99 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.53 -9.05 -45.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201924829.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.957 kcal (2) G-P(sol) polarization free energy of solvation -36.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds