Wall clock time and date at job start Fri Apr 10 2020 18:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47543 * 2 1 4 4 N 1.46899 * 109.47201 * 180.02562 * 3 2 1 5 5 C 1.46902 * 110.99869 * 293.95597 * 4 3 2 6 6 C 1.46903 * 110.99875 * 170.00308 * 4 3 2 7 7 C 1.50697 * 109.47010 * 190.00041 * 6 4 3 8 8 O 1.21285 * 120.00121 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00019 * 179.97438 * 7 6 4 10 10 C 1.47503 * 118.75848 * 0.02562 * 9 7 6 11 11 C 1.53573 * 111.03106 * 221.62609 * 10 9 7 12 12 C 1.51534 * 109.58000 * 39.97757 * 11 10 9 13 13 O 1.42158 * 108.76478 * 268.60478 * 12 11 10 14 14 C 1.38013 * 119.44261 * 87.21486 * 13 12 11 15 15 H 1.09006 * 109.46188 * 56.58118 * 14 13 12 16 16 C 1.52992 * 109.47331 * 176.57427 * 14 13 12 17 17 N 1.46498 * 109.47364 * 300.00645 * 16 14 13 18 18 C 1.36935 * 120.00239 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 16 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72253 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72375 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72186 * 22 20 18 26 26 C 1.45128 * 118.76018 * 179.97438 * 9 7 6 27 27 H 1.09000 * 109.47565 * 59.99160 * 1 2 3 28 28 H 1.08993 * 109.47416 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46785 * 300.00137 * 1 2 3 30 30 H 1.09007 * 109.46785 * 239.99863 * 2 1 3 31 31 H 1.08999 * 109.47075 * 120.00658 * 2 1 3 32 32 H 1.09003 * 109.46706 * 60.00206 * 3 2 1 33 33 H 1.08994 * 109.47008 * 300.00362 * 3 2 1 34 34 H 1.09004 * 109.47241 * 296.04392 * 5 4 3 35 35 H 1.08999 * 109.47165 * 56.05048 * 5 4 3 36 36 H 1.09004 * 109.46749 * 176.04711 * 5 4 3 37 37 H 1.08998 * 109.47315 * 69.99610 * 6 4 3 38 38 H 1.09000 * 109.46967 * 309.99619 * 6 4 3 39 39 H 1.09000 * 109.17026 * 101.22810 * 10 9 7 40 40 H 1.09005 * 109.12501 * 341.99865 * 10 9 7 41 41 H 1.08996 * 109.45317 * 279.94702 * 11 10 9 42 42 H 1.08998 * 109.43830 * 159.99622 * 11 10 9 43 43 H 1.08997 * 109.59307 * 148.82034 * 12 11 10 44 44 H 1.09005 * 109.59141 * 28.38382 * 12 11 10 45 45 H 1.09001 * 109.47602 * 180.02562 * 16 14 13 46 46 H 1.09001 * 109.46922 * 60.00663 * 16 14 13 47 47 H 0.97004 * 119.99747 * 0.02562 * 17 16 14 48 48 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 49 49 H 1.09004 * 109.45500 * 330.69024 * 26 9 7 50 50 H 1.09003 * 109.46183 * 210.73181 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 4.0360 0.8853 1.2524 6 6 4.0355 2.7930 -0.2387 7 6 5.5216 2.7182 -0.4767 8 8 6.0868 1.6454 -0.4501 9 7 6.2228 3.8433 -0.7191 10 6 5.5080 5.1333 -0.7447 11 6 6.0066 6.0170 -1.8975 12 6 6.2407 5.1631 -3.1273 13 8 7.5919 4.7213 -3.1268 14 6 7.9260 3.5610 -2.4583 15 1 7.3255 2.7357 -2.8409 16 6 9.4094 3.2561 -2.6760 17 7 9.6681 3.0866 -4.1079 18 6 10.9346 2.8057 -4.5463 19 1 11.7427 2.7088 -3.8364 20 6 11.1799 2.6455 -5.9032 21 7 10.1940 2.7583 -6.7679 22 14 12.9074 2.2617 -6.5012 23 1 12.9020 2.1329 -7.9806 24 1 13.8245 3.3599 -6.1032 25 1 13.3692 0.9871 -5.8951 26 6 7.6528 3.7402 -0.9440 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.7453 1.5256 2.0853 35 1 3.6304 -0.1150 1.4042 36 1 5.1233 0.8320 1.1973 37 1 3.8379 3.4187 0.6317 38 1 3.5486 3.2236 -1.1137 39 1 5.6713 5.6519 0.2001 40 1 4.4413 4.9481 -0.8713 41 1 6.9400 6.4994 -1.6076 42 1 5.2588 6.7778 -2.1210 43 1 6.0495 5.7529 -4.0237 44 1 5.5743 4.3007 -3.1057 45 1 9.6732 2.3395 -2.1484 46 1 10.0099 4.0815 -2.2935 47 1 8.9423 3.1740 -4.7456 48 1 9.2968 2.9572 -6.4574 49 1 8.0450 2.8813 -0.3993 50 1 8.1424 4.6480 -0.5914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201924829.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:10 Heat of formation + Delta-G solvation = -78.127996 kcal Electronic energy + Delta-G solvation = -27497.820465 eV Core-core repulsion = 23752.952744 eV Total energy + Delta-G solvation = -3744.867721 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.77131 -40.02577 -38.29770 -37.11887 -36.38445 -34.53431 -34.07155 -32.59103 -30.87123 -29.16359 -28.00594 -27.53278 -26.41179 -24.92807 -23.84463 -22.81798 -22.37879 -21.69480 -20.02921 -19.41493 -18.52559 -17.89012 -17.63871 -17.41272 -16.85729 -16.41612 -16.25523 -15.99441 -15.72751 -15.54185 -15.13843 -14.98769 -14.91755 -14.76091 -14.36013 -14.04266 -13.73731 -13.65253 -13.40230 -13.01780 -12.95226 -12.77796 -12.72203 -12.68401 -12.59058 -12.40985 -12.31942 -12.09198 -11.94403 -11.87601 -11.60048 -11.47265 -11.31055 -10.98510 -10.79670 -10.62555 -9.70190 -9.29861 -9.15062 -8.43334 -5.36130 1.52429 1.56939 1.68699 1.80901 1.85049 2.63055 2.70785 2.89450 3.38328 3.42958 3.52587 3.79586 3.90866 3.92964 3.99228 4.01773 4.09505 4.14712 4.20662 4.26008 4.28002 4.38694 4.42756 4.46152 4.49410 4.51940 4.61657 4.66009 4.68110 4.76834 4.79887 4.81263 4.85936 4.98797 5.06678 5.06931 5.15455 5.21837 5.28061 5.40442 5.47556 5.53381 5.89039 6.06821 6.29140 6.45433 6.66204 7.05766 7.13791 7.95832 8.08893 9.08565 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.016667 B = 0.002855 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.530346 B = 9804.421306 C =10516.187846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.059 3.941 4 N -0.554 5.554 5 C 0.023 3.977 6 C 0.045 3.955 7 C 0.499 3.501 8 O -0.565 6.565 9 N -0.611 5.611 10 C 0.101 3.899 11 C -0.156 4.156 12 C 0.063 3.937 13 O -0.399 6.399 14 C 0.107 3.893 15 H 0.017 0.983 16 C 0.168 3.832 17 N -0.751 5.751 18 C -0.338 4.338 19 H 0.069 0.931 20 C -0.108 4.108 21 N -0.973 5.973 22 Si 1.134 2.866 23 H -0.290 1.290 24 H -0.274 1.274 25 H -0.277 1.277 26 C 0.098 3.902 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.036 0.964 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.123 0.877 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.073 0.927 42 H 0.123 0.877 43 H 0.095 0.905 44 H 0.043 0.957 45 H 0.031 0.969 46 H 0.031 0.969 47 H 0.360 0.640 48 H 0.241 0.759 49 H 0.077 0.923 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.057 6.056 19.846 30.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.068 4.068 4 N -0.279 5.279 5 C -0.125 4.125 6 C -0.086 4.086 7 C 0.288 3.712 8 O -0.443 6.443 9 N -0.344 5.344 10 C -0.020 4.020 11 C -0.194 4.194 12 C -0.013 4.013 13 O -0.318 6.318 14 C 0.046 3.954 15 H 0.035 0.965 16 C 0.041 3.959 17 N -0.396 5.396 18 C -0.469 4.469 19 H 0.087 0.913 20 C -0.298 4.298 21 N -0.621 5.621 22 Si 0.957 3.043 23 H -0.216 1.216 24 H -0.200 1.200 25 H -0.203 1.203 26 C -0.027 4.027 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.141 0.859 39 H 0.113 0.887 40 H 0.129 0.871 41 H 0.091 0.909 42 H 0.141 0.859 43 H 0.113 0.887 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.049 0.951 47 H 0.192 0.808 48 H 0.051 0.949 49 H 0.095 0.905 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.375 5.005 18.270 27.820 hybrid contribution -1.341 0.363 1.637 2.147 sum -21.716 5.368 19.907 29.945 Atomic orbital electron populations 1.21696 0.94070 1.02230 1.02359 1.21534 0.96525 0.96090 1.01919 1.22239 0.84777 0.97927 1.01862 1.61576 1.08875 1.20769 1.36693 1.22468 1.01024 1.00173 0.88806 1.22078 0.90236 0.91766 1.04470 1.21399 0.90835 0.83243 0.75761 1.90690 1.72289 1.29756 1.51559 1.48083 1.07558 1.08345 1.70448 1.22349 0.97370 0.82140 1.00112 1.22431 1.04006 0.98903 0.94075 1.22437 0.81585 0.97473 0.99778 1.86347 1.29131 1.41698 1.74657 1.21868 0.94901 0.86238 0.92374 0.96522 1.20681 0.92409 0.97507 0.85291 1.42422 1.07595 1.86790 1.02774 1.20445 0.87684 1.44306 0.94493 0.91343 1.27417 1.09344 1.00746 0.92296 1.70976 1.00863 1.54290 1.35985 0.82582 0.69546 0.76910 0.75263 1.21615 1.19992 1.20318 1.22033 0.81981 1.03807 0.94854 0.92225 0.92339 0.91914 0.92888 0.92194 0.93195 0.89842 0.94546 0.90890 0.92417 0.88918 0.85935 0.88743 0.87124 0.90857 0.85891 0.88706 0.93896 0.95161 0.95063 0.80779 0.94860 0.90466 0.88077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 71.98 0.71 -0.81 16 2 C -0.12 -1.79 5.86 30.59 0.18 -1.61 16 3 C 0.06 0.82 4.96 86.30 0.43 1.24 16 4 N -0.55 -11.20 4.50 -927.04 -4.17 -15.37 16 5 C 0.02 0.47 9.01 127.69 1.15 1.62 16 6 C 0.04 0.75 3.78 85.56 0.32 1.08 16 7 C 0.50 12.93 7.36 87.66 0.64 13.57 16 8 O -0.57 -20.54 13.74 -3.04 -0.04 -20.58 16 9 N -0.61 -13.92 2.19 -817.74 -1.79 -15.71 16 10 C 0.10 1.29 6.00 86.38 0.52 1.81 16 11 C -0.16 -2.39 5.79 30.31 0.18 -2.22 16 12 C 0.06 1.59 6.37 71.50 0.46 2.04 16 13 O -0.40 -14.64 9.18 -117.84 -1.08 -15.72 16 14 C 0.11 4.06 2.74 31.24 0.09 4.14 16 15 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 16 C 0.17 7.74 5.95 86.38 0.51 8.26 16 17 N -0.75 -42.86 5.49 -343.47 -1.88 -44.75 16 18 C -0.34 -20.71 9.99 84.03 0.84 -19.87 16 19 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 20 C -0.11 -6.66 5.50 84.86 0.47 -6.20 16 21 N -0.97 -64.89 13.70 21.65 0.30 -64.59 16 22 Si 1.13 54.63 29.92 68.60 2.05 56.68 16 23 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 26 C 0.10 2.86 4.87 87.29 0.43 3.29 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.05 0.97 8.14 -2.38 -0.02 0.96 16 31 H 0.06 0.90 6.47 -2.39 -0.02 0.88 16 32 H 0.05 0.54 8.12 -2.39 -0.02 0.52 16 33 H 0.08 1.00 7.93 -2.39 -0.02 0.98 16 34 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.07 1.40 6.30 -2.39 -0.02 1.38 16 36 H 0.06 1.56 5.88 -2.39 -0.01 1.55 16 37 H 0.09 0.99 8.02 -2.39 -0.02 0.97 16 38 H 0.12 1.54 7.20 -2.39 -0.02 1.52 16 39 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.11 0.78 5.87 -2.38 -0.01 0.76 16 41 H 0.07 1.33 8.01 -2.39 -0.02 1.31 16 42 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.04 1.10 7.40 -2.38 -0.02 1.08 16 45 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.36 21.60 6.36 -92.71 -0.59 21.01 16 48 H 0.24 16.25 6.77 -92.71 -0.63 15.63 16 49 H 0.08 2.50 7.27 -2.38 -0.02 2.49 16 50 H 0.10 2.56 8.11 -2.39 -0.02 2.54 16 Total: -1.00 -83.68 385.26 0.76 -82.92 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.46 Total: 30.75 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 6.92 Total: 6.36 kcal Atomic # 7 Polarization: -132.87 SS G_CDS: -7.55 Total: -140.42 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -1.12 Total: -36.30 kcal Atomic # 14 Polarization: 54.63 SS G_CDS: 2.05 Total: 56.68 kcal Total: -83.68 0.76 -82.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201924829.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.795 kcal (2) G-P(sol) polarization free energy of solvation -83.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds