Wall clock time and date at job start Fri Apr 10 2020 18:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 114.00046 * 2 1 4 4 C 1.50698 * 109.47172 * 180.02562 * 3 2 1 5 5 O 1.21279 * 119.99808 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00023 * 180.02562 * 4 3 2 7 7 C 1.46919 * 120.63255 * 179.97438 * 6 4 3 8 8 C 1.53195 * 108.89273 * 126.34238 * 7 6 4 9 9 C 1.53346 * 109.14901 * 54.57640 * 8 7 6 10 10 C 1.53004 * 109.41904 * 178.67276 * 9 8 7 11 11 N 1.46901 * 109.47273 * 295.13166 * 10 9 8 12 12 C 1.46892 * 110.99941 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47168 * 179.97438 * 12 11 10 14 14 O 1.21290 * 119.99567 * 0.02562 * 13 12 11 15 15 N 1.34771 * 119.99829 * 180.02562 * 13 12 11 16 16 C 1.37098 * 119.99609 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00503 * 359.97438 * 16 15 13 18 18 C 1.38955 * 119.99818 * 180.02562 * 16 15 13 19 19 N 1.31407 * 120.00022 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99819 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46847 * 89.99700 * 20 18 16 22 22 H 1.48501 * 109.47149 * 209.99835 * 20 18 16 23 23 H 1.48497 * 109.47184 * 330.00088 * 20 18 16 24 24 C 1.53034 * 109.61010 * 298.71225 * 9 8 7 25 25 C 1.46933 * 120.62741 * 0.02562 * 6 4 3 26 26 H 1.09005 * 109.46620 * 299.99293 * 1 2 3 27 27 H 1.08992 * 109.47594 * 60.00012 * 1 2 3 28 28 H 1.09002 * 109.46588 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46424 * 60.00320 * 3 2 1 30 30 H 1.09001 * 109.47169 * 300.00611 * 3 2 1 31 31 H 1.09002 * 109.58751 * 246.20189 * 7 6 4 32 32 H 1.08996 * 109.58750 * 6.48373 * 7 6 4 33 33 H 1.08997 * 109.49914 * 174.65962 * 8 7 6 34 34 H 1.09002 * 109.49585 * 294.75599 * 8 7 6 35 35 H 1.09001 * 109.42242 * 58.75065 * 9 8 7 36 36 H 1.09001 * 109.46592 * 55.13132 * 10 9 8 37 37 H 1.08997 * 109.47133 * 175.12697 * 10 9 8 38 38 H 1.00898 * 110.99851 * 56.04100 * 11 10 9 39 39 H 1.08997 * 109.47620 * 299.99656 * 12 11 10 40 40 H 1.09009 * 109.47147 * 60.00030 * 12 11 10 41 41 H 0.96994 * 120.00922 * 0.02562 * 15 13 12 42 42 H 0.97007 * 119.99968 * 179.97438 * 19 18 16 43 43 H 1.08994 * 109.50232 * 301.42239 * 24 9 8 44 44 H 1.09007 * 109.52628 * 181.33900 * 24 9 8 45 45 H 1.08994 * 109.58580 * 353.38021 * 25 6 4 46 46 H 1.09006 * 109.57831 * 113.65514 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0015 6 7 4.2765 2.2969 -0.0002 7 6 5.7423 2.1970 -0.0003 8 6 6.2955 3.0207 -1.1675 9 6 5.7602 4.4544 -1.0697 10 6 6.3354 5.2913 -2.2141 11 7 7.7913 5.4048 -2.0541 12 6 8.3793 6.2032 -3.1379 13 6 9.8703 6.2979 -2.9400 14 8 10.3917 5.7534 -1.9898 15 7 10.6242 6.9876 -3.8188 16 6 11.9806 7.0733 -3.6390 17 1 12.4450 6.5885 -2.7930 18 6 12.7579 7.7848 -4.5447 19 7 12.1929 8.3751 -5.5739 20 14 14.6061 7.9022 -4.2994 21 1 15.2707 6.7719 -4.9965 22 1 15.0990 9.1869 -4.8578 23 1 14.9177 7.8411 -2.8487 24 6 4.2330 4.4400 -1.1662 25 6 3.6592 3.6302 0.0014 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 1.6886 1.8463 0.8901 30 1 1.6886 1.8465 -0.8899 31 1 6.1350 2.5853 0.9395 32 1 6.0375 1.1543 -0.1166 33 1 7.3845 3.0314 -1.1212 34 1 5.9753 2.5767 -2.1100 35 1 6.0597 4.8889 -0.1160 36 1 6.1109 4.8088 -3.1654 37 1 5.8893 6.2857 -2.1969 38 1 8.2214 4.4936 -2.0022 39 1 8.1692 5.7267 -4.0954 40 1 7.9474 7.2040 -3.1274 41 1 10.2073 7.4233 -4.5784 42 1 12.7355 8.8721 -6.2060 43 1 3.9322 3.9829 -2.1088 44 1 3.8554 5.4616 -1.1204 45 1 2.5799 3.5333 -0.1163 46 1 3.8803 4.1340 0.9424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204174713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:23 Heat of formation + Delta-G solvation = -117.701439 kcal Electronic energy + Delta-G solvation = -25649.465688 eV Core-core repulsion = 21767.048839 eV Total energy + Delta-G solvation = -3882.416849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.58521 -38.68122 -38.15544 -37.46052 -35.59393 -33.92996 -32.85309 -31.68827 -31.20882 -29.37600 -27.96528 -26.36656 -25.67397 -24.07491 -23.38041 -22.46296 -20.72558 -19.43536 -19.19176 -17.92600 -17.76937 -16.88897 -16.73032 -16.26730 -15.93535 -15.56512 -15.14293 -14.85603 -14.69732 -14.54004 -14.46798 -13.99883 -13.81397 -13.65174 -13.43463 -13.21776 -13.07018 -12.60616 -12.45945 -12.42925 -11.91696 -11.80937 -11.58220 -11.55292 -11.51233 -11.06958 -10.98700 -10.78419 -10.53497 -10.39301 -10.27174 -10.21736 -9.97822 -9.51006 -8.97089 -8.45984 -8.06312 -7.95971 -6.41861 -3.82650 2.28298 2.37233 3.17994 3.26634 3.32745 3.47040 3.90854 4.05129 4.15138 4.25943 4.40625 4.56444 4.59289 4.63645 4.72578 4.79413 4.85435 4.90161 5.01620 5.03677 5.11381 5.21562 5.23611 5.26404 5.39471 5.45431 5.46751 5.61172 5.71084 5.74265 5.80991 5.86457 5.93333 5.98164 6.20895 6.22157 6.28883 6.53541 7.04173 7.21627 7.55169 7.65705 7.86541 8.06371 8.61213 9.17839 9.54304 10.05737 10.75858 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.041341 B = 0.001883 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.133997 B =14868.182418 C =15181.098479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.044 3.956 4 C 0.515 3.485 5 O -0.521 6.521 6 N -0.611 5.611 7 C 0.114 3.886 8 C -0.133 4.133 9 C -0.086 4.086 10 C 0.064 3.936 11 N -0.669 5.669 12 C 0.050 3.950 13 C 0.440 3.560 14 O -0.583 6.583 15 N -0.564 5.564 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 C -0.129 4.129 25 C 0.106 3.894 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.025 0.975 37 H 0.071 0.929 38 H 0.348 0.652 39 H 0.042 0.958 40 H 0.085 0.915 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.135 -7.960 7.895 27.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.301 3.699 5 O -0.396 6.396 6 N -0.347 5.347 7 C -0.008 4.008 8 C -0.171 4.171 9 C -0.105 4.105 10 C -0.066 4.066 11 N -0.303 5.303 12 C -0.082 4.082 13 C 0.226 3.774 14 O -0.468 6.468 15 N -0.201 5.201 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.168 4.168 25 C -0.017 4.017 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.044 0.956 37 H 0.090 0.910 38 H 0.169 0.831 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.333 -8.460 8.817 27.229 hybrid contribution 0.330 0.263 -1.309 1.376 sum -24.003 -8.197 7.508 26.452 Atomic orbital electron populations 1.22850 0.80282 1.03427 1.00143 1.88027 1.19856 1.25244 1.95402 1.22293 0.91880 0.86953 1.02443 1.20220 0.88641 0.84244 0.76754 1.90733 1.74424 1.26167 1.48229 1.48087 1.07170 1.05643 1.73753 1.21634 0.77992 1.02305 0.98869 1.22074 1.01618 0.94968 0.98468 1.21206 0.93692 0.95108 1.00456 1.21987 0.89074 0.99505 0.95987 1.60123 1.02298 1.21702 1.46134 1.21669 0.94976 0.99117 0.92479 1.19821 0.87682 0.84565 0.85350 1.90520 1.73728 1.50406 1.32096 1.41863 1.07646 1.46230 1.24312 1.19713 0.81927 1.30796 1.10499 0.87906 1.25264 1.00703 0.96535 0.95439 1.69613 1.36767 1.34340 1.13616 0.85853 0.82105 0.77513 0.78788 1.20428 1.20926 1.19399 1.21949 0.95977 1.00496 0.98382 1.21817 0.97439 0.82749 0.99651 0.93763 0.93750 0.89009 0.90253 0.90220 0.90972 0.88886 0.89662 0.91703 0.89614 0.95635 0.91009 0.83135 0.93977 0.89647 0.77471 0.91887 0.91401 0.90167 0.90084 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.72 10.24 -55.14 -0.56 -4.29 16 3 C 0.04 0.34 4.76 36.00 0.17 0.51 16 4 C 0.51 5.72 7.77 -10.99 -0.09 5.63 16 5 O -0.52 -8.24 15.91 -14.35 -0.23 -8.47 16 6 N -0.61 -5.52 2.97 -172.74 -0.51 -6.03 16 7 C 0.11 1.13 6.42 -3.71 -0.02 1.11 16 8 C -0.13 -1.32 5.18 -26.45 -0.14 -1.46 16 9 C -0.09 -0.79 2.36 -90.42 -0.21 -1.00 16 10 C 0.06 0.72 5.14 -3.82 -0.02 0.70 16 11 N -0.67 -10.44 6.12 -115.06 -0.70 -11.14 16 12 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 13 C 0.44 10.40 7.82 -10.99 -0.09 10.31 16 14 O -0.58 -15.84 15.78 5.55 0.09 -15.76 16 15 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 16 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 17 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 20 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 24 C -0.13 -0.84 5.37 -26.59 -0.14 -0.99 16 25 C 0.11 0.62 6.34 -3.68 -0.02 0.60 16 26 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.40 7.94 -51.93 -0.41 -0.01 16 30 H 0.08 0.42 7.69 -51.93 -0.40 0.02 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.08 7.00 -51.93 -0.36 0.72 16 33 H 0.08 0.94 6.63 -51.93 -0.34 0.60 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.35 5.65 6.66 -39.29 -0.26 5.38 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.37 8.14 -51.92 -0.42 0.95 16 41 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 45 H 0.08 0.28 5.93 -51.93 -0.31 -0.03 16 46 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 374.84 15.07 5.65 5.65 Total: -1.00 -35.32 374.84 -7.77 -43.09 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -7.42 Total: 9.57 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 0.28 Total: 9.49 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.55 Total: -55.36 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.71 Total: -28.51 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.32 -7.77 -43.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204174713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.609 kcal (2) G-P(sol) polarization free energy of solvation -35.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds