Wall clock time and date at job start Fri Apr 10 2020 18:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 114.00046 * 2 1 4 4 C 1.50698 * 109.47172 * 180.02562 * 3 2 1 5 5 O 1.21279 * 119.99808 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00023 * 180.02562 * 4 3 2 7 7 C 1.46919 * 120.63255 * 179.97438 * 6 4 3 8 8 C 1.53195 * 108.89273 * 126.34238 * 7 6 4 9 9 C 1.53346 * 109.14901 * 54.57640 * 8 7 6 10 10 C 1.53004 * 109.41904 * 178.67276 * 9 8 7 11 11 N 1.46901 * 109.47273 * 295.13166 * 10 9 8 12 12 C 1.46892 * 110.99941 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47168 * 179.97438 * 12 11 10 14 14 O 1.21290 * 119.99567 * 0.02562 * 13 12 11 15 15 N 1.34771 * 119.99829 * 180.02562 * 13 12 11 16 16 C 1.37098 * 119.99609 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00503 * 359.97438 * 16 15 13 18 18 C 1.38955 * 119.99818 * 180.02562 * 16 15 13 19 19 N 1.31407 * 120.00022 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99819 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46847 * 89.99700 * 20 18 16 22 22 H 1.48501 * 109.47149 * 209.99835 * 20 18 16 23 23 H 1.48497 * 109.47184 * 330.00088 * 20 18 16 24 24 C 1.53034 * 109.61010 * 298.71225 * 9 8 7 25 25 C 1.46933 * 120.62741 * 0.02562 * 6 4 3 26 26 H 1.09005 * 109.46620 * 299.99293 * 1 2 3 27 27 H 1.08992 * 109.47594 * 60.00012 * 1 2 3 28 28 H 1.09002 * 109.46588 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46424 * 60.00320 * 3 2 1 30 30 H 1.09001 * 109.47169 * 300.00611 * 3 2 1 31 31 H 1.09002 * 109.58751 * 246.20189 * 7 6 4 32 32 H 1.08996 * 109.58750 * 6.48373 * 7 6 4 33 33 H 1.08997 * 109.49914 * 174.65962 * 8 7 6 34 34 H 1.09002 * 109.49585 * 294.75599 * 8 7 6 35 35 H 1.09001 * 109.42242 * 58.75065 * 9 8 7 36 36 H 1.09001 * 109.46592 * 55.13132 * 10 9 8 37 37 H 1.08997 * 109.47133 * 175.12697 * 10 9 8 38 38 H 1.00898 * 110.99851 * 56.04100 * 11 10 9 39 39 H 1.08997 * 109.47620 * 299.99656 * 12 11 10 40 40 H 1.09009 * 109.47147 * 60.00030 * 12 11 10 41 41 H 0.96994 * 120.00922 * 0.02562 * 15 13 12 42 42 H 0.97007 * 119.99968 * 179.97438 * 19 18 16 43 43 H 1.08994 * 109.50232 * 301.42239 * 24 9 8 44 44 H 1.09007 * 109.52628 * 181.33900 * 24 9 8 45 45 H 1.08994 * 109.58580 * 353.38021 * 25 6 4 46 46 H 1.09006 * 109.57831 * 113.65514 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0015 6 7 4.2765 2.2969 -0.0002 7 6 5.7423 2.1970 -0.0003 8 6 6.2955 3.0207 -1.1675 9 6 5.7602 4.4544 -1.0697 10 6 6.3354 5.2913 -2.2141 11 7 7.7913 5.4048 -2.0541 12 6 8.3793 6.2032 -3.1379 13 6 9.8703 6.2979 -2.9400 14 8 10.3917 5.7534 -1.9898 15 7 10.6242 6.9876 -3.8188 16 6 11.9806 7.0733 -3.6390 17 1 12.4450 6.5885 -2.7930 18 6 12.7579 7.7848 -4.5447 19 7 12.1929 8.3751 -5.5739 20 14 14.6061 7.9022 -4.2994 21 1 15.2707 6.7719 -4.9965 22 1 15.0990 9.1869 -4.8578 23 1 14.9177 7.8411 -2.8487 24 6 4.2330 4.4400 -1.1662 25 6 3.6592 3.6302 0.0014 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 1.6886 1.8463 0.8901 30 1 1.6886 1.8465 -0.8899 31 1 6.1350 2.5853 0.9395 32 1 6.0375 1.1543 -0.1166 33 1 7.3845 3.0314 -1.1212 34 1 5.9753 2.5767 -2.1100 35 1 6.0597 4.8889 -0.1160 36 1 6.1109 4.8088 -3.1654 37 1 5.8893 6.2857 -2.1969 38 1 8.2214 4.4936 -2.0022 39 1 8.1692 5.7267 -4.0954 40 1 7.9474 7.2040 -3.1274 41 1 10.2073 7.4233 -4.5784 42 1 12.7355 8.8721 -6.2060 43 1 3.9322 3.9829 -2.1088 44 1 3.8554 5.4616 -1.1204 45 1 2.5799 3.5333 -0.1163 46 1 3.8803 4.1340 0.9424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204174713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:21 Heat of formation + Delta-G solvation = -144.785157 kcal Electronic energy + Delta-G solvation = -25650.640126 eV Core-core repulsion = 21767.048839 eV Total energy + Delta-G solvation = -3883.591287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.34125 -40.18225 -39.20273 -38.23329 -36.73055 -35.87343 -33.90162 -33.23007 -32.35543 -30.08384 -29.02120 -27.32130 -26.68282 -25.53011 -24.13680 -23.36153 -21.51682 -21.06960 -20.09149 -19.89683 -18.50668 -17.84761 -17.53623 -17.31384 -17.03036 -16.64131 -16.43217 -16.01290 -15.82655 -15.54386 -15.44291 -15.28245 -15.10717 -14.65501 -14.34006 -14.20439 -13.98791 -13.80825 -13.48971 -13.21821 -13.16908 -13.10443 -12.89427 -12.65325 -12.42490 -12.34065 -12.19246 -12.12589 -11.83746 -11.53979 -11.51246 -11.31020 -10.79817 -10.76611 -10.34616 -10.02026 -9.71856 -9.30331 -8.47214 -5.95995 1.37772 1.41685 1.50202 1.54462 1.72031 2.04949 2.29048 2.93516 2.97391 3.20079 3.51790 3.54906 3.81723 3.82997 3.89041 4.12341 4.15024 4.23801 4.31408 4.33407 4.41275 4.47107 4.50654 4.56367 4.58504 4.60125 4.64762 4.73299 4.83798 4.88293 4.90361 4.96002 5.01711 5.08604 5.19701 5.40458 5.49184 5.51390 5.90584 6.04830 6.12882 6.36631 6.42027 6.59802 7.09682 7.12175 7.55871 8.11297 8.70101 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.041341 B = 0.001883 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.133997 B =14868.182418 C =15181.098479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.047 3.953 4 C 0.504 3.496 5 O -0.583 6.583 6 N -0.606 5.606 7 C 0.115 3.885 8 C -0.126 4.126 9 C -0.080 4.080 10 C 0.066 3.934 11 N -0.684 5.684 12 C 0.065 3.935 13 C 0.436 3.564 14 O -0.624 6.624 15 N -0.573 5.573 16 C -0.336 4.336 17 H 0.078 0.922 18 C -0.012 4.012 19 N -0.919 5.919 20 Si 0.993 3.007 21 H -0.271 1.271 22 H -0.270 1.270 23 H -0.274 1.274 24 C -0.123 4.123 25 C 0.102 3.898 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.033 0.967 37 H 0.086 0.914 38 H 0.341 0.659 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.068 0.932 44 H 0.104 0.896 45 H 0.115 0.885 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.410 -6.370 7.698 29.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.032 4.032 4 C 0.293 3.707 5 O -0.463 6.463 6 N -0.340 5.340 7 C -0.008 4.008 8 C -0.165 4.165 9 C -0.099 4.099 10 C -0.063 4.063 11 N -0.317 5.317 12 C -0.068 4.068 13 C 0.223 3.777 14 O -0.511 6.511 15 N -0.210 5.210 16 C -0.465 4.465 17 H 0.096 0.904 18 C -0.212 4.212 19 N -0.560 5.560 20 Si 0.817 3.183 21 H -0.197 1.197 22 H -0.194 1.194 23 H -0.198 1.198 24 C -0.161 4.161 25 C -0.020 4.020 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.129 0.871 30 H 0.127 0.873 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.104 0.896 38 H 0.160 0.840 39 H 0.081 0.919 40 H 0.124 0.876 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.122 0.878 45 H 0.133 0.867 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -26.660 -6.815 8.601 28.830 hybrid contribution 0.999 -0.230 -1.227 1.599 sum -25.661 -7.046 7.374 27.613 Atomic orbital electron populations 1.23040 0.78161 1.04134 1.01788 1.87973 1.22279 1.26974 1.95796 1.22441 0.88822 0.86697 1.05231 1.21047 0.90458 0.83643 0.75539 1.90700 1.75757 1.28529 1.51283 1.48200 1.06521 1.06793 1.72458 1.21498 0.79330 1.00830 0.99148 1.21972 1.00580 0.95880 0.98036 1.21167 0.95845 0.93544 0.99315 1.22109 0.86263 1.00800 0.97117 1.60161 1.04735 1.21216 1.45617 1.21536 0.90234 1.00942 0.94068 1.20944 0.90219 0.82584 0.83906 1.90488 1.75339 1.51622 1.33613 1.41933 1.07150 1.46976 1.24977 1.19676 0.83592 1.32458 1.10816 0.90380 1.26034 1.04793 0.95564 0.94808 1.69669 1.38311 1.34206 1.13846 0.84928 0.76860 0.78119 0.78421 1.19690 1.19435 1.19841 1.21926 0.93383 1.02066 0.98723 1.22133 0.99134 0.80657 1.00034 0.91976 0.92110 0.88985 0.87061 0.87259 0.90396 0.91425 0.91408 0.92361 0.90241 0.94913 0.89563 0.83963 0.91929 0.87567 0.76945 0.91279 0.91326 0.87772 0.86727 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -7.86 10.24 -129.94 -1.33 -9.19 16 3 C 0.05 0.60 4.76 71.24 0.34 0.94 16 4 C 0.50 10.91 7.77 87.66 0.68 11.59 16 5 O -0.58 -19.34 15.91 16.01 0.25 -19.09 16 6 N -0.61 -10.17 2.97 -818.81 -2.43 -12.61 16 7 C 0.11 2.34 6.42 86.36 0.55 2.89 16 8 C -0.13 -2.52 5.18 30.78 0.16 -2.36 16 9 C -0.08 -1.32 2.36 -10.66 -0.03 -1.34 16 10 C 0.07 1.33 5.14 86.30 0.44 1.77 16 11 N -0.68 -20.71 6.12 -517.93 -3.17 -23.88 16 12 C 0.06 2.17 6.17 85.56 0.53 2.70 16 13 C 0.44 20.81 7.82 87.66 0.69 21.49 16 14 O -0.62 -34.85 15.78 -3.06 -0.05 -34.90 16 15 N -0.57 -29.52 5.29 -306.98 -1.62 -31.15 16 16 C -0.34 -19.22 9.68 84.04 0.81 -18.40 16 17 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 18 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 19 N -0.92 -49.57 13.05 21.66 0.28 -49.28 16 20 Si 0.99 43.09 29.55 68.60 2.03 45.11 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 24 C -0.12 -1.16 5.37 30.69 0.16 -1.00 16 25 C 0.10 0.82 6.34 86.38 0.55 1.37 16 26 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 27 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.11 0.68 7.94 -2.39 -0.02 0.66 16 30 H 0.11 0.71 7.69 -2.39 -0.02 0.70 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.73 7.00 -2.39 -0.02 1.71 16 33 H 0.07 1.58 6.63 -2.39 -0.02 1.56 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.34 11.16 6.66 -89.70 -0.60 10.56 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.11 3.16 8.14 -2.38 -0.02 3.14 16 41 H 0.40 19.30 7.90 -92.71 -0.73 18.57 16 42 H 0.28 14.00 8.31 -92.70 -0.77 13.23 16 43 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 45 H 0.11 0.21 5.93 -2.39 -0.01 0.20 16 46 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 Total: -1.00 -80.31 374.84 0.23 -80.08 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: -0.34 Total: 33.97 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 6.61 Total: 20.94 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -6.95 Total: -116.92 kcal Atomic # 8 Polarization: -62.06 SS G_CDS: -1.12 Total: -63.18 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -80.31 0.23 -80.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204174713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.702 kcal (2) G-P(sol) polarization free energy of solvation -80.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds