Wall clock time and date at job start Fri Apr 10 2020 18:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42892 * 114.00593 * 2 1 4 4 H 1.09001 * 110.88692 * 32.43093 * 3 2 1 5 5 C 1.54907 * 111.00746 * 268.55150 * 3 2 1 6 6 N 1.47420 * 104.83524 * 204.91501 * 5 3 2 7 7 C 1.36935 * 125.65209 * 204.16221 * 6 5 3 8 8 H 1.08004 * 120.00235 * 179.97438 * 7 6 5 9 9 C 1.38816 * 119.99734 * 359.95746 * 7 6 5 10 10 N 1.31614 * 120.00076 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00049 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47191 * 59.99988 * 11 9 7 13 13 H 1.48491 * 109.47370 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46931 * 300.00230 * 11 9 7 15 15 C 1.47026 * 108.70428 * 24.12518 * 6 5 3 16 16 C 1.54330 * 107.26840 * 358.94103 * 15 6 5 17 17 H 1.08998 * 110.71700 * 96.16950 * 16 15 6 18 18 N 1.46495 * 110.72220 * 219.44076 * 16 15 6 19 19 C 1.34778 * 120.00419 * 273.55342 * 18 16 15 20 20 O 1.21279 * 119.99538 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00038 * 179.97438 * 19 18 16 22 22 C 1.52999 * 109.47078 * 84.99648 * 21 19 18 23 23 C 1.52999 * 109.46775 * 204.99627 * 21 19 18 24 24 N 1.46497 * 109.47147 * 324.99498 * 21 19 18 25 25 C 1.34774 * 120.00114 * 180.02562 * 24 21 19 26 26 C 1.50696 * 120.00076 * 180.02562 * 25 24 21 27 27 O 1.21280 * 119.99861 * 359.97438 * 25 24 21 28 28 H 1.08995 * 109.47485 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46862 * 299.99886 * 1 2 3 30 30 H 1.08996 * 109.47388 * 59.99216 * 1 2 3 31 31 H 1.08997 * 110.36783 * 86.07220 * 5 3 2 32 32 H 1.08997 * 110.45914 * 323.79871 * 5 3 2 33 33 H 0.97002 * 119.99964 * 180.02562 * 10 9 7 34 34 H 1.08998 * 109.88351 * 118.35702 * 15 6 5 35 35 H 1.08998 * 109.88379 * 239.52492 * 15 6 5 36 36 H 0.97005 * 119.99930 * 93.54212 * 18 16 15 37 37 H 1.08996 * 109.47364 * 60.00209 * 22 21 19 38 38 H 1.09005 * 109.46736 * 179.97438 * 22 21 19 39 39 H 1.09002 * 109.47206 * 300.00050 * 22 21 19 40 40 H 1.08997 * 109.47502 * 59.99779 * 23 21 19 41 41 H 1.08999 * 109.47358 * 180.02562 * 23 21 19 42 42 H 1.09006 * 109.47374 * 299.99808 * 23 21 19 43 43 H 0.97000 * 120.00183 * 0.02562 * 24 21 19 44 44 H 1.09001 * 109.47241 * 89.99665 * 26 25 24 45 45 H 1.08999 * 109.47018 * 209.99748 * 26 25 24 46 46 H 1.08994 * 109.47411 * 329.99390 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3832 2.0100 0.5461 5 6 2.2696 1.7977 -1.4456 6 7 3.3612 2.7805 -1.3195 7 6 3.6230 3.7995 -2.1961 8 1 4.4500 4.4697 -2.0136 9 6 2.8255 3.9708 -3.3193 10 7 1.8176 3.1542 -3.5415 11 14 3.1821 5.3612 -4.5147 12 1 4.5508 5.1999 -5.0677 13 1 2.1932 5.3280 -5.6219 14 1 3.0854 6.6617 -3.8043 15 6 4.1218 2.4860 -0.0963 16 6 3.4486 1.2736 0.5810 17 1 3.9550 0.3483 0.3067 18 7 3.4237 1.4407 2.0362 19 6 4.4796 1.0510 2.7776 20 8 5.4504 0.5616 2.2399 21 6 4.4541 1.2234 4.2745 22 6 3.7495 0.0252 4.9139 23 6 5.8875 1.3132 4.8019 24 7 3.7315 2.4522 4.6123 25 6 3.5822 2.8132 5.9021 26 6 2.8384 4.0769 6.2496 27 8 4.0455 2.1205 6.7832 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.3762 2.2730 -1.8505 32 1 2.5781 0.9678 -2.0813 33 1 1.2605 3.2737 -4.3266 34 1 5.1534 2.2428 -0.3507 35 1 4.0957 3.3461 0.5727 36 1 2.6471 1.8319 2.4663 37 1 4.2871 -0.8890 4.6626 38 1 3.7315 0.1497 5.9966 39 1 2.7283 -0.0388 4.5380 40 1 6.3895 2.1667 4.3464 41 1 5.8691 1.4374 5.8847 42 1 6.4252 0.3989 4.5506 43 1 3.3606 3.0060 3.9076 44 1 1.7799 3.8514 6.3799 45 1 3.2383 4.4910 7.1752 46 1 2.9589 4.8023 5.4452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213583129.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:57 Heat of formation + Delta-G solvation = -82.191268 kcal Electronic energy + Delta-G solvation = -27679.573241 eV Core-core repulsion = 23798.696229 eV Total energy + Delta-G solvation = -3880.877012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.86924 -39.39789 -38.23029 -36.04078 -35.60032 -34.19700 -32.33637 -31.81101 -29.21709 -28.91996 -27.48512 -27.19558 -26.18090 -24.74258 -23.36783 -21.08408 -20.60007 -20.25707 -19.52046 -18.42297 -17.09446 -16.88219 -16.46539 -15.62250 -15.52683 -15.35050 -14.94283 -14.67190 -14.41692 -14.32375 -14.01741 -13.92954 -13.38641 -13.29781 -12.94922 -12.89450 -12.63686 -12.41037 -12.27345 -12.11803 -11.99970 -11.83817 -11.52056 -11.42283 -11.36098 -11.08501 -10.88718 -10.85720 -10.29688 -10.19865 -9.97376 -9.86587 -9.61009 -9.44545 -9.15240 -8.82846 -8.76014 -6.97323 -5.75884 -3.19206 2.33489 2.46774 2.99656 3.06960 3.35142 3.39911 3.40919 4.03716 4.38167 4.45429 4.58709 4.81768 4.84137 4.95433 5.10878 5.12476 5.34974 5.42474 5.43246 5.53797 5.56274 5.59215 5.60100 5.61764 5.65448 5.76415 5.77179 5.90121 5.97579 6.02288 6.10008 6.17166 6.19655 6.34286 6.59563 6.77003 7.16927 7.18020 7.44869 7.51313 7.65405 7.71441 7.93117 8.16993 8.22007 9.09414 9.69840 10.31808 11.27860 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.015345 B = 0.003659 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.264390 B = 7651.356842 C = 8238.462836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.055 3.945 4 H 0.066 0.934 5 C 0.140 3.860 6 N -0.600 5.600 7 C -0.225 4.225 8 H 0.080 0.920 9 C -0.008 4.008 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.284 1.284 13 H -0.289 1.289 14 H -0.284 1.284 15 C 0.132 3.868 16 C 0.136 3.864 17 H 0.103 0.897 18 N -0.713 5.713 19 C 0.516 3.484 20 O -0.522 6.522 21 C 0.161 3.839 22 C -0.159 4.159 23 C -0.149 4.149 24 N -0.727 5.727 25 C 0.517 3.483 26 C -0.175 4.175 27 O -0.540 6.540 28 H 0.079 0.921 29 H 0.033 0.967 30 H 0.048 0.952 31 H 0.113 0.887 32 H 0.027 0.973 33 H 0.254 0.746 34 H 0.035 0.965 35 H 0.029 0.971 36 H 0.395 0.605 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.402 0.598 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.866 -1.413 16.971 17.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.299 6.299 3 C -0.005 4.005 4 H 0.084 0.916 5 C 0.014 3.986 6 N -0.328 5.328 7 C -0.353 4.353 8 H 0.098 0.902 9 C -0.204 4.204 10 N -0.571 5.571 11 Si 0.748 3.252 12 H -0.211 1.211 13 H -0.215 1.215 14 H -0.211 1.211 15 C 0.005 3.995 16 C 0.032 3.968 17 H 0.121 0.879 18 N -0.364 5.364 19 C 0.300 3.700 20 O -0.396 6.396 21 C 0.072 3.928 22 C -0.217 4.217 23 C -0.208 4.208 24 N -0.383 5.383 25 C 0.305 3.695 26 C -0.234 4.234 27 O -0.417 6.417 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.130 0.870 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.229 0.771 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.238 0.762 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.787 -2.368 16.985 17.242 hybrid contribution -0.644 1.375 -0.937 1.784 sum -2.431 -0.993 16.048 16.261 Atomic orbital electron populations 1.22701 0.81472 1.01980 1.00035 1.87846 1.19330 1.27613 1.95139 1.24015 0.91982 0.83844 1.00614 0.91622 1.22333 0.95387 0.91954 0.88945 1.44287 1.31786 1.33137 1.23544 1.19045 1.11269 1.04205 1.00794 0.90239 1.24796 0.97970 0.99280 0.98344 1.69731 1.19889 1.38628 1.28869 0.86110 0.77434 0.81281 0.80415 1.21070 1.21500 1.21103 1.21592 0.95299 0.93391 0.89261 1.22184 0.96673 1.00494 0.77491 0.87927 1.46101 1.19050 1.63305 1.07973 1.20423 0.82983 0.78385 0.88217 1.90745 1.32835 1.43386 1.72620 1.20615 0.94876 0.86132 0.91215 1.22168 1.00153 0.96046 1.03313 1.22041 0.92557 1.03433 1.02743 1.46326 1.57889 1.25603 1.08456 1.20789 0.79520 0.87272 0.81922 1.21916 1.01901 0.95258 1.04368 1.90666 1.48963 1.54546 1.47488 0.90277 0.94839 0.93345 0.86958 0.95506 0.93505 0.94749 0.95335 0.77075 0.90919 0.89205 0.92083 0.92211 0.89799 0.90546 0.76231 0.88677 0.88745 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.89 101.05 1.10 1.58 16 2 O -0.38 -6.64 10.51 -35.23 -0.37 -7.01 16 3 C 0.05 0.99 3.10 -24.58 -0.08 0.92 16 4 H 0.07 1.08 7.76 -51.93 -0.40 0.68 16 5 C 0.14 3.26 5.62 -2.53 -0.01 3.25 16 6 N -0.60 -14.83 3.39 -170.07 -0.58 -15.41 16 7 C -0.23 -6.07 10.27 -15.06 -0.15 -6.22 16 8 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 9 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 10 N -0.92 -25.84 10.09 55.49 0.56 -25.28 16 11 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 C 0.13 2.73 6.99 -3.06 -0.02 2.71 16 16 C 0.14 2.43 2.97 -66.10 -0.20 2.23 16 17 H 0.10 2.05 7.70 -51.93 -0.40 1.65 16 18 N -0.71 -9.87 4.82 -52.03 -0.25 -10.12 16 19 C 0.52 7.52 6.65 -10.98 -0.07 7.45 16 20 O -0.52 -9.63 15.83 5.56 0.09 -9.54 16 21 C 0.16 1.90 0.98 -132.97 -0.13 1.77 16 22 C -0.16 -1.76 8.38 37.16 0.31 -1.45 16 23 C -0.15 -1.85 7.93 37.16 0.29 -1.56 16 24 N -0.73 -6.84 4.86 -48.69 -0.24 -7.08 16 25 C 0.52 5.00 7.36 -10.99 -0.08 4.92 16 26 C -0.17 -1.03 10.30 36.00 0.37 -0.66 16 27 O -0.54 -7.02 13.31 5.56 0.07 -6.94 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.03 0.39 8.11 -51.93 -0.42 -0.03 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.11 2.89 5.87 -51.93 -0.30 2.59 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.25 6.93 8.31 -40.82 -0.34 6.60 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.56 8.03 -51.93 -0.42 0.15 16 36 H 0.39 4.33 7.26 -40.82 -0.30 4.03 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.05 6.17 -51.93 -0.32 0.73 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.05 6.17 -51.93 -0.32 0.73 16 42 H 0.08 0.97 7.87 -51.93 -0.41 0.56 16 43 H 0.40 3.13 7.24 -40.82 -0.30 2.84 16 44 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -32.69 370.36 -6.28 -38.97 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -7.36 Total: 5.86 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: 1.24 Total: 14.60 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.51 Total: -57.88 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.21 Total: -23.50 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.69 -6.28 -38.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213583129.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.217 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds