Wall clock time and date at job start Fri Apr 10 2020 18:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42892 * 114.00593 * 2 1 4 4 H 1.09001 * 110.88692 * 32.43093 * 3 2 1 5 5 C 1.54907 * 111.00746 * 268.55150 * 3 2 1 6 6 N 1.47420 * 104.83524 * 204.91501 * 5 3 2 7 7 C 1.36935 * 125.65209 * 204.16221 * 6 5 3 8 8 H 1.08004 * 120.00235 * 179.97438 * 7 6 5 9 9 C 1.38816 * 119.99734 * 359.95746 * 7 6 5 10 10 N 1.31614 * 120.00076 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00049 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47191 * 59.99988 * 11 9 7 13 13 H 1.48491 * 109.47370 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46931 * 300.00230 * 11 9 7 15 15 C 1.47026 * 108.70428 * 24.12518 * 6 5 3 16 16 C 1.54330 * 107.26840 * 358.94103 * 15 6 5 17 17 H 1.08998 * 110.71700 * 96.16950 * 16 15 6 18 18 N 1.46495 * 110.72220 * 219.44076 * 16 15 6 19 19 C 1.34778 * 120.00419 * 273.55342 * 18 16 15 20 20 O 1.21279 * 119.99538 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00038 * 179.97438 * 19 18 16 22 22 C 1.52999 * 109.47078 * 84.99648 * 21 19 18 23 23 C 1.52999 * 109.46775 * 204.99627 * 21 19 18 24 24 N 1.46497 * 109.47147 * 324.99498 * 21 19 18 25 25 C 1.34774 * 120.00114 * 180.02562 * 24 21 19 26 26 C 1.50696 * 120.00076 * 180.02562 * 25 24 21 27 27 O 1.21280 * 119.99861 * 359.97438 * 25 24 21 28 28 H 1.08995 * 109.47485 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46862 * 299.99886 * 1 2 3 30 30 H 1.08996 * 109.47388 * 59.99216 * 1 2 3 31 31 H 1.08997 * 110.36783 * 86.07220 * 5 3 2 32 32 H 1.08997 * 110.45914 * 323.79871 * 5 3 2 33 33 H 0.97002 * 119.99964 * 180.02562 * 10 9 7 34 34 H 1.08998 * 109.88351 * 118.35702 * 15 6 5 35 35 H 1.08998 * 109.88379 * 239.52492 * 15 6 5 36 36 H 0.97005 * 119.99930 * 93.54212 * 18 16 15 37 37 H 1.08996 * 109.47364 * 60.00209 * 22 21 19 38 38 H 1.09005 * 109.46736 * 179.97438 * 22 21 19 39 39 H 1.09002 * 109.47206 * 300.00050 * 22 21 19 40 40 H 1.08997 * 109.47502 * 59.99779 * 23 21 19 41 41 H 1.08999 * 109.47358 * 180.02562 * 23 21 19 42 42 H 1.09006 * 109.47374 * 299.99808 * 23 21 19 43 43 H 0.97000 * 120.00183 * 0.02562 * 24 21 19 44 44 H 1.09001 * 109.47241 * 89.99665 * 26 25 24 45 45 H 1.08999 * 109.47018 * 209.99748 * 26 25 24 46 46 H 1.08994 * 109.47411 * 329.99390 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3832 2.0100 0.5461 5 6 2.2696 1.7977 -1.4456 6 7 3.3612 2.7805 -1.3195 7 6 3.6230 3.7995 -2.1961 8 1 4.4500 4.4697 -2.0136 9 6 2.8255 3.9708 -3.3193 10 7 1.8176 3.1542 -3.5415 11 14 3.1821 5.3612 -4.5147 12 1 4.5508 5.1999 -5.0677 13 1 2.1932 5.3280 -5.6219 14 1 3.0854 6.6617 -3.8043 15 6 4.1218 2.4860 -0.0963 16 6 3.4486 1.2736 0.5810 17 1 3.9550 0.3483 0.3067 18 7 3.4237 1.4407 2.0362 19 6 4.4796 1.0510 2.7776 20 8 5.4504 0.5616 2.2399 21 6 4.4541 1.2234 4.2745 22 6 3.7495 0.0252 4.9139 23 6 5.8875 1.3132 4.8019 24 7 3.7315 2.4522 4.6123 25 6 3.5822 2.8132 5.9021 26 6 2.8384 4.0769 6.2496 27 8 4.0455 2.1205 6.7832 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.3762 2.2730 -1.8505 32 1 2.5781 0.9678 -2.0813 33 1 1.2605 3.2737 -4.3266 34 1 5.1534 2.2428 -0.3507 35 1 4.0957 3.3461 0.5727 36 1 2.6471 1.8319 2.4663 37 1 4.2871 -0.8890 4.6626 38 1 3.7315 0.1497 5.9966 39 1 2.7283 -0.0388 4.5380 40 1 6.3895 2.1667 4.3464 41 1 5.8691 1.4374 5.8847 42 1 6.4252 0.3989 4.5506 43 1 3.3606 3.0060 3.9076 44 1 1.7799 3.8514 6.3799 45 1 3.2383 4.4910 7.1752 46 1 2.9589 4.8023 5.4452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213583129.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:56 Heat of formation + Delta-G solvation = -107.401801 kcal Electronic energy + Delta-G solvation = -27680.666452 eV Core-core repulsion = 23798.696229 eV Total energy + Delta-G solvation = -3881.970223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.93316 -40.53478 -39.61774 -37.54196 -36.61612 -35.73583 -33.64645 -33.15439 -30.62222 -29.80756 -28.97762 -28.30733 -27.54944 -26.33702 -24.66721 -22.49050 -21.91743 -21.70222 -20.58189 -19.53261 -18.88522 -18.09781 -17.52891 -17.23366 -16.62179 -16.48126 -16.20515 -15.84783 -15.80059 -15.66470 -15.34853 -14.97492 -14.81170 -14.65554 -14.19892 -13.98152 -13.71159 -13.53646 -13.37514 -13.21840 -13.17408 -13.01738 -12.97236 -12.76678 -12.69541 -12.59383 -12.35105 -12.33974 -12.09205 -11.89086 -11.55415 -11.30596 -10.78877 -10.67456 -10.50470 -10.30305 -10.22807 -8.96949 -7.80376 -5.27390 1.29056 1.48639 1.51499 1.57703 1.65206 1.81982 2.14689 2.45578 2.72710 3.30340 3.35912 3.56311 3.75788 3.81977 3.93684 3.95708 3.97489 4.06133 4.34990 4.44921 4.51761 4.60159 4.63197 4.66189 4.67059 4.71792 4.73540 4.77948 4.82813 4.88462 4.89917 5.12328 5.15526 5.18425 5.26869 5.30796 5.37197 5.45381 5.68811 6.19042 6.30205 6.31728 6.47780 7.00222 7.05378 7.21534 7.69909 8.31761 9.20737 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.015345 B = 0.003659 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.264390 B = 7651.356842 C = 8238.462836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.078 3.922 4 H 0.094 0.906 5 C 0.144 3.856 6 N -0.617 5.617 7 C -0.244 4.244 8 H 0.083 0.917 9 C -0.058 4.058 10 N -0.946 5.946 11 Si 0.981 3.019 12 H -0.283 1.283 13 H -0.292 1.292 14 H -0.272 1.272 15 C 0.132 3.868 16 C 0.153 3.847 17 H 0.079 0.921 18 N -0.696 5.696 19 C 0.520 3.480 20 O -0.562 6.562 21 C 0.170 3.830 22 C -0.153 4.153 23 C -0.146 4.146 24 N -0.720 5.720 25 C 0.515 3.485 26 C -0.168 4.168 27 O -0.576 6.576 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.089 0.911 32 H -0.013 1.013 33 H 0.250 0.750 34 H 0.015 0.985 35 H 0.047 0.953 36 H 0.414 0.586 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.412 0.588 44 H 0.114 0.886 45 H 0.096 0.904 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.126 -0.216 18.649 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C 0.018 3.982 4 H 0.111 0.889 5 C 0.018 3.982 6 N -0.345 5.345 7 C -0.373 4.373 8 H 0.101 0.899 9 C -0.251 4.251 10 N -0.595 5.595 11 Si 0.809 3.191 12 H -0.210 1.210 13 H -0.218 1.218 14 H -0.198 1.198 15 C 0.006 3.994 16 C 0.047 3.953 17 H 0.098 0.902 18 N -0.348 5.348 19 C 0.305 3.695 20 O -0.439 6.439 21 C 0.080 3.920 22 C -0.211 4.211 23 C -0.204 4.204 24 N -0.376 5.376 25 C 0.305 3.695 26 C -0.227 4.227 27 O -0.455 6.455 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.106 0.894 32 H 0.005 0.995 33 H 0.059 0.941 34 H 0.033 0.967 35 H 0.065 0.935 36 H 0.252 0.748 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.250 0.750 44 H 0.132 0.868 45 H 0.114 0.886 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.078 -1.148 18.698 18.985 hybrid contribution -0.237 0.956 -1.462 1.763 sum -3.316 -0.192 17.236 17.553 Atomic orbital electron populations 1.22968 0.79263 1.03867 1.00779 1.87840 1.21742 1.26831 1.95008 1.23613 0.92611 0.84889 0.97072 0.88853 1.22095 0.93885 0.90269 0.91933 1.44521 1.32745 1.32820 1.24429 1.19404 1.11391 1.04838 1.01623 0.89941 1.25601 0.97980 1.01610 0.99952 1.69970 1.20572 1.39994 1.28995 0.85115 0.76885 0.78955 0.78119 1.20963 1.21830 1.19764 1.21666 0.94114 0.95181 0.88452 1.21667 0.95938 0.98114 0.79553 0.90245 1.45812 1.19805 1.63119 1.06104 1.20879 0.82158 0.77192 0.89244 1.90738 1.34411 1.45087 1.73624 1.20409 0.95092 0.87770 0.88743 1.22129 1.00639 0.95405 1.02975 1.21994 0.92966 1.02862 1.02587 1.46255 1.57497 1.24825 1.09057 1.21494 0.78926 0.87934 0.81189 1.21942 1.02265 0.93390 1.05081 1.90659 1.50551 1.55912 1.48379 0.87964 0.91910 0.94697 0.89365 0.99544 0.94059 0.96734 0.93487 0.74835 0.91298 0.89490 0.90831 0.92718 0.89810 0.91294 0.75021 0.86784 0.88560 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.89 113.37 1.23 1.91 16 2 O -0.40 -13.27 10.51 -148.98 -1.57 -14.84 16 3 C 0.08 2.74 3.10 31.98 0.10 2.84 16 4 H 0.09 2.80 7.76 -2.39 -0.02 2.78 16 5 C 0.14 6.90 5.62 86.86 0.49 7.39 16 6 N -0.62 -30.96 3.39 -691.99 -2.35 -33.31 16 7 C -0.24 -13.28 10.27 84.03 0.86 -12.42 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 9 C -0.06 -3.19 5.49 84.86 0.47 -2.73 16 10 N -0.95 -54.09 10.09 21.65 0.22 -53.88 16 11 Si 0.98 44.04 29.55 68.60 2.03 46.07 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 13 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 14 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 15 C 0.13 5.48 6.99 86.73 0.61 6.08 16 16 C 0.15 5.37 2.97 46.18 0.14 5.51 16 17 H 0.08 3.22 7.70 -2.39 -0.02 3.20 16 18 N -0.70 -17.86 4.82 -436.92 -2.11 -19.97 16 19 C 0.52 14.50 6.65 87.66 0.58 15.09 16 20 O -0.56 -20.72 15.83 -3.03 -0.05 -20.77 16 21 C 0.17 3.73 0.98 2.86 0.00 3.74 16 22 C -0.15 -3.13 8.38 71.98 0.60 -2.53 16 23 C -0.15 -3.52 7.93 71.98 0.57 -2.95 16 24 N -0.72 -11.68 4.86 -426.34 -2.07 -13.75 16 25 C 0.51 8.65 7.36 87.66 0.65 9.29 16 26 C -0.17 -1.40 10.30 71.23 0.73 -0.67 16 27 O -0.58 -14.03 13.31 -3.03 -0.04 -14.07 16 28 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.06 1.22 8.11 -2.39 -0.02 1.20 16 30 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 4.67 5.87 -2.39 -0.01 4.66 16 32 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 33 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 34 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.05 1.78 8.03 -2.39 -0.02 1.76 16 36 H 0.41 7.63 7.26 -92.70 -0.67 6.96 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.09 1.89 6.17 -2.38 -0.01 1.88 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.08 2.05 6.17 -2.39 -0.01 2.03 16 42 H 0.07 1.75 7.87 -2.38 -0.02 1.73 16 43 H 0.41 5.03 7.24 -92.71 -0.67 4.36 16 44 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -73.14 370.36 0.75 -72.39 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -0.35 Total: 21.56 kcal Atomic # 6 Polarization: 23.54 SS G_CDS: 7.03 Total: 30.57 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -6.31 Total: -120.91 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: -1.65 Total: -49.68 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -73.14 0.75 -72.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213583129.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.013 kcal (2) G-P(sol) polarization free energy of solvation -73.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds