Wall clock time and date at job start Fri Apr 10 2020 18:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21280 * 120.00006 * 2 1 4 4 N 1.34782 * 120.00097 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00098 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47283 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47595 * 59.99315 * 6 5 4 8 8 C 1.53004 * 109.46655 * 299.99641 * 6 5 4 9 9 C 1.50699 * 109.47282 * 179.97438 * 6 5 4 10 10 O 1.21280 * 120.00006 * 359.97438 * 9 6 5 11 11 N 1.34779 * 119.99708 * 179.97438 * 9 6 5 12 12 C 1.46500 * 119.99710 * 180.02562 * 11 9 6 13 13 H 1.08996 * 110.88712 * 31.11774 * 12 11 9 14 14 C 1.55129 * 111.19217 * 267.18830 * 12 11 9 15 15 N 1.47426 * 104.72269 * 279.19105 * 14 12 11 16 16 C 1.36936 * 125.64969 * 155.81158 * 15 14 12 17 17 H 1.07997 * 119.99957 * 333.60040 * 16 15 14 18 18 C 1.38810 * 119.99669 * 153.59750 * 16 15 14 19 19 N 1.31617 * 120.00105 * 145.64335 * 18 16 15 20 20 Si 1.86799 * 120.00164 * 325.63542 * 18 16 15 21 21 H 1.48501 * 109.47342 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47371 * 240.00016 * 20 18 16 23 23 H 1.48504 * 109.47044 * 120.00056 * 20 18 16 24 24 C 1.47022 * 108.69937 * 335.55611 * 15 14 12 25 25 C 1.54325 * 107.27534 * 1.28109 * 24 15 14 26 26 H 1.08999 * 110.72129 * 263.66202 * 25 24 15 27 27 O 1.42900 * 110.71874 * 140.55672 * 25 24 15 28 28 H 1.09005 * 109.46934 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46892 * 299.99617 * 1 2 3 30 30 H 1.08990 * 109.47395 * 59.99892 * 1 2 3 31 31 H 0.96995 * 119.99619 * 0.02562 * 4 2 1 32 32 H 1.08995 * 109.47244 * 59.99708 * 5 4 2 33 33 H 1.09008 * 109.46664 * 299.99777 * 5 4 2 34 34 H 1.08997 * 109.47515 * 180.02562 * 7 6 5 35 35 H 1.09005 * 109.47101 * 300.00894 * 7 6 5 36 36 H 1.09004 * 109.46855 * 59.99899 * 7 6 5 37 37 H 1.08997 * 109.47366 * 300.00019 * 8 6 5 38 38 H 1.09006 * 109.47398 * 59.99988 * 8 6 5 39 39 H 1.08997 * 109.47257 * 179.97438 * 8 6 5 40 40 H 0.96995 * 120.00008 * 0.02562 * 11 9 6 41 41 H 1.08995 * 110.49925 * 160.34872 * 14 12 11 42 42 H 1.09003 * 110.34175 * 37.95088 * 14 12 11 43 43 H 0.97004 * 119.99870 * 5.05282 * 19 18 16 44 44 H 1.08999 * 109.88375 * 120.70726 * 24 15 14 45 45 H 1.09003 * 109.88003 * 241.86849 * 24 15 14 46 46 H 0.96703 * 113.99484 * 61.46350 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 6 4.1559 -2.6097 0.0010 7 6 3.6464 -3.3308 -1.2485 8 6 3.6455 -3.3311 1.2500 9 6 5.6629 -2.6097 0.0009 10 8 6.2693 -1.5594 0.0005 11 7 6.3368 -3.7770 0.0013 12 6 7.8018 -3.7770 0.0018 13 1 8.1902 -2.9051 0.5281 14 6 8.3631 -3.8481 -1.4426 15 7 8.2863 -5.2752 -1.8045 16 6 8.2188 -5.7730 -3.0784 17 1 7.8010 -5.1712 -3.8719 18 6 8.6873 -7.0511 -3.3498 19 7 8.0891 -7.7923 -4.2581 20 14 10.1671 -7.7192 -2.4259 21 1 10.6535 -6.6970 -1.4648 22 1 11.2474 -8.0455 -3.3912 23 1 9.7764 -8.9466 -1.6869 24 6 8.3004 -6.0756 -0.5714 25 6 8.3577 -5.0896 0.6144 26 1 9.3844 -4.9549 0.9547 27 8 7.5264 -5.5390 1.6863 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.6959 -2.0072 0.0005 32 1 4.0089 -0.6532 0.8910 33 1 4.0095 -0.6536 -0.8890 34 1 4.0094 -4.3586 -1.2483 35 1 2.5563 -3.3308 -1.2489 36 1 4.0100 -2.8168 -2.1383 37 1 4.0085 -2.8175 2.1401 38 1 2.5554 -3.3311 1.2496 39 1 4.0084 -4.3589 1.2497 40 1 5.8518 -4.6169 0.0013 41 1 9.3975 -3.5056 -1.4674 42 1 7.7489 -3.2521 -2.1176 43 1 7.3678 -7.4203 -4.7894 44 1 7.3938 -6.6775 -0.5096 45 1 9.1782 -6.7217 -0.5589 46 1 7.7862 -6.3953 2.0531 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220530575.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:13 Heat of formation + Delta-G solvation = -131.639148 kcal Electronic energy + Delta-G solvation = -27519.047720 eV Core-core repulsion = 23636.026487 eV Total energy + Delta-G solvation = -3883.021233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.69564 -40.60493 -39.66867 -37.39646 -36.72008 -35.44137 -34.43396 -33.68758 -30.92535 -30.29277 -29.18388 -28.36810 -27.13959 -25.93806 -24.14101 -22.44586 -21.74277 -21.47993 -20.58213 -19.65563 -18.38824 -18.28707 -17.68409 -17.17978 -17.14482 -16.71631 -16.53436 -16.08367 -15.98699 -15.50727 -15.11696 -14.96357 -14.83931 -14.66873 -14.39758 -14.38622 -13.85575 -13.43740 -13.29752 -13.26884 -13.19685 -13.15032 -13.06815 -12.82899 -12.78304 -12.70614 -12.17942 -12.15670 -11.99709 -11.71114 -11.31058 -11.07363 -10.96671 -10.77854 -10.52622 -10.21729 -10.07698 -9.18687 -8.56585 -5.50866 1.43065 1.54429 1.55733 1.62090 1.71940 1.90126 2.43528 2.50489 2.91491 3.06473 3.35935 3.43978 3.63404 3.66739 3.69637 3.78708 3.94417 3.99095 4.19137 4.45223 4.47475 4.49574 4.50526 4.60715 4.64476 4.69493 4.72145 4.77648 4.81378 4.85036 4.86371 4.89518 5.02166 5.09216 5.16233 5.22934 5.35632 5.48024 5.69540 6.12950 6.49047 6.55695 6.79806 6.84510 7.17385 7.24756 7.44754 8.16918 8.75262 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.021825 B = 0.003309 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.635897 B = 8458.579878 C = 8928.710934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.500 3.500 3 O -0.607 6.607 4 N -0.710 5.710 5 C 0.153 3.847 6 C -0.080 4.080 7 C -0.139 4.139 8 C -0.135 4.135 9 C 0.520 3.480 10 O -0.587 6.587 11 N -0.683 5.683 12 C 0.145 3.855 13 H 0.103 0.897 14 C 0.115 3.885 15 N -0.610 5.610 16 C -0.336 4.336 17 H 0.025 0.975 18 C -0.055 4.055 19 N -0.932 5.932 20 Si 1.096 2.904 21 H -0.253 1.253 22 H -0.301 1.301 23 H -0.278 1.278 24 C 0.088 3.912 25 C 0.105 3.895 26 H 0.101 0.899 27 O -0.556 6.556 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.418 0.582 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.040 0.960 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.411 0.589 41 H 0.041 0.959 42 H 0.026 0.974 43 H 0.251 0.749 44 H 0.039 0.961 45 H 0.035 0.965 46 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.625 4.662 15.506 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.290 3.710 3 O -0.489 6.489 4 N -0.365 5.365 5 C 0.027 3.973 6 C -0.084 4.084 7 C -0.196 4.196 8 C -0.192 4.192 9 C 0.307 3.693 10 O -0.467 6.467 11 N -0.332 5.332 12 C 0.038 3.962 13 H 0.121 0.879 14 C -0.011 4.011 15 N -0.339 5.339 16 C -0.464 4.464 17 H 0.043 0.957 18 C -0.253 4.253 19 N -0.573 5.573 20 Si 0.921 3.079 21 H -0.178 1.178 22 H -0.229 1.229 23 H -0.204 1.204 24 C -0.037 4.037 25 C 0.044 3.956 26 H 0.119 0.881 27 O -0.364 6.364 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.258 0.742 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.247 0.753 41 H 0.058 0.942 42 H 0.044 0.956 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -12.161 5.307 15.515 20.415 hybrid contribution -0.587 0.302 -1.210 1.378 sum -12.748 5.609 14.305 19.965 Atomic orbital electron populations 1.21874 0.87278 1.06737 1.06022 1.21796 0.92588 0.82585 0.74076 1.90729 1.72355 1.33601 1.52204 1.46038 1.06100 1.09643 1.74731 1.20761 0.80763 0.94463 1.01289 1.20879 0.90219 0.96667 1.00598 1.21889 1.03394 1.00098 0.94226 1.21887 1.03239 1.00432 0.93653 1.20838 0.90600 0.83179 0.74689 1.90684 1.71289 1.32640 1.52092 1.45428 1.06179 1.08771 1.72872 1.22080 0.81039 0.98075 0.94964 0.87905 1.22217 0.97902 0.86957 0.94054 1.44518 1.87282 1.01024 1.01034 1.19542 1.38757 1.02073 0.86060 0.95709 1.27268 1.02693 0.94380 1.00937 1.71044 1.24340 1.34696 1.27178 0.83439 0.73880 0.75628 0.74985 1.17826 1.22907 1.20422 1.22513 0.99581 0.94915 0.86666 1.22913 0.94926 0.91826 0.85927 0.88126 1.86424 1.57062 1.42937 1.49940 0.87106 0.87782 0.88133 0.74235 0.92654 0.93839 0.91406 0.88031 0.94031 0.92336 0.88400 0.90539 0.75295 0.94154 0.95584 0.93921 0.94281 0.94730 0.74897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 10.39 71.24 0.74 -0.72 16 2 C 0.50 10.35 7.94 87.66 0.70 11.05 16 3 O -0.61 -20.08 17.10 -3.03 -0.05 -20.13 16 4 N -0.71 -12.19 4.96 -463.05 -2.30 -14.49 16 5 C 0.15 3.85 3.85 86.38 0.33 4.19 16 6 C -0.08 -1.77 0.63 -52.93 -0.03 -1.80 16 7 C -0.14 -2.78 8.20 71.98 0.59 -2.19 16 8 C -0.13 -2.04 8.20 71.98 0.59 -1.45 16 9 C 0.52 16.21 6.48 87.66 0.57 16.78 16 10 O -0.59 -23.04 15.62 -3.03 -0.05 -23.08 16 11 N -0.68 -20.65 4.60 -435.61 -2.00 -22.65 16 12 C 0.15 4.73 3.31 46.46 0.15 4.88 16 13 H 0.10 3.33 7.54 -2.39 -0.02 3.31 16 14 C 0.11 4.66 6.95 86.93 0.60 5.26 16 15 N -0.61 -28.03 3.05 -691.55 -2.11 -30.15 16 16 C -0.34 -18.86 10.24 84.03 0.86 -17.99 16 17 H 0.03 1.57 8.06 -2.91 -0.02 1.55 16 18 C -0.05 -3.11 5.29 84.86 0.45 -2.66 16 19 N -0.93 -56.96 13.70 21.65 0.30 -56.66 16 20 Si 1.10 49.61 26.22 68.60 1.80 51.41 16 21 H -0.25 -10.23 6.18 99.48 0.61 -9.62 16 22 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 24 C 0.09 3.26 5.80 86.73 0.50 3.76 16 25 C 0.10 2.92 4.12 31.78 0.13 3.05 16 26 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 27 O -0.56 -12.37 12.67 -148.98 -1.89 -14.25 16 28 H 0.11 0.23 7.91 -2.38 -0.02 0.21 16 29 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.42 3.74 6.00 -92.71 -0.56 3.19 16 32 H 0.06 1.64 8.10 -2.39 -0.02 1.62 16 33 H 0.04 1.39 8.10 -2.38 -0.02 1.37 16 34 H 0.07 1.43 7.56 -2.39 -0.02 1.41 16 35 H 0.10 1.26 6.86 -2.38 -0.02 1.24 16 36 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.10 0.83 6.86 -2.38 -0.02 0.82 16 39 H 0.08 1.10 7.56 -2.39 -0.02 1.09 16 40 H 0.41 11.51 7.22 -92.71 -0.67 10.84 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.25 15.56 8.73 -92.71 -0.81 14.75 16 44 H 0.04 1.49 8.06 -2.39 -0.02 1.47 16 45 H 0.04 1.31 3.85 -2.39 -0.01 1.30 16 46 H 0.40 5.39 9.11 -74.06 -0.67 4.72 16 Total: -1.00 -82.98 368.24 -1.13 -84.11 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -1.01 Total: 23.73 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: 6.18 Total: 22.16 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -6.11 Total: -123.94 kcal Atomic # 8 Polarization: -55.48 SS G_CDS: -1.99 Total: -57.47 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 1.80 Total: 51.41 kcal Total: -82.98 -1.13 -84.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220530575.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.524 kcal (2) G-P(sol) polarization free energy of solvation -82.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds