Wall clock time and date at job start Fri Apr 10 2020 18:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46495 * 120.00597 * 2 1 4 4 C 1.34776 * 119.99769 * 180.02562 * 2 1 3 5 5 O 1.21287 * 120.00123 * 359.97438 * 4 2 1 6 6 C 1.50702 * 120.00513 * 180.02562 * 4 2 1 7 7 C 1.52995 * 109.47846 * 180.02562 * 6 4 2 8 8 C 1.52990 * 109.47353 * 180.02562 * 7 6 4 9 9 C 1.50703 * 109.47398 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99488 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00290 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27728 * 11 9 8 13 13 H 1.09004 * 110.64443 * 36.40691 * 12 11 9 14 14 C 1.54319 * 110.71865 * 273.26553 * 12 11 9 15 15 N 1.47026 * 107.27305 * 219.44531 * 14 12 11 16 16 C 1.36933 * 125.64795 * 178.97725 * 15 14 12 17 17 H 1.08003 * 120.00259 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00172 * 180.02562 * 16 15 14 19 19 N 1.31626 * 119.99664 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00294 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47321 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47329 * 119.99804 * 20 18 16 23 23 H 1.48503 * 109.47315 * 239.99899 * 20 18 16 24 24 C 1.47415 * 108.70097 * 358.93997 * 15 14 12 25 25 C 1.54908 * 104.83313 * 24.12967 * 24 15 14 26 26 H 1.09002 * 111.00600 * 204.91249 * 25 24 15 27 27 O 1.42898 * 111.00432 * 81.06369 * 25 24 15 28 28 H 1.09003 * 109.47367 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47140 * 299.99983 * 1 2 3 30 30 H 1.09005 * 109.46741 * 59.99614 * 1 2 3 31 31 H 1.08993 * 109.47757 * 270.00569 * 3 2 1 32 32 H 1.09004 * 109.46599 * 30.00466 * 3 2 1 33 33 H 1.09004 * 109.47543 * 149.99375 * 3 2 1 34 34 H 1.08999 * 109.46772 * 59.99331 * 6 4 2 35 35 H 1.09003 * 109.46720 * 300.00556 * 6 4 2 36 36 H 1.08998 * 109.47142 * 59.99444 * 7 6 4 37 37 H 1.09011 * 109.46657 * 300.00002 * 7 6 4 38 38 H 1.08998 * 109.47508 * 59.99597 * 8 7 6 39 39 H 1.09002 * 109.47337 * 299.99883 * 8 7 6 40 40 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 41 41 H 1.09003 * 109.88536 * 338.86823 * 14 12 11 42 42 H 1.09005 * 109.88445 * 99.87296 * 14 12 11 43 43 H 0.96995 * 119.99897 * 180.02562 * 19 18 16 44 44 H 1.09001 * 110.36616 * 142.96574 * 24 15 14 45 45 H 1.08999 * 110.37454 * 265.17780 * 24 15 14 46 46 H 0.96700 * 114.00665 * 67.80752 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5324 -2.2176 -0.0005 6 6 3.6458 -1.1674 0.0001 7 6 4.1558 -2.6099 -0.0014 8 6 5.6857 -2.6099 -0.0001 9 6 6.1881 -4.0308 -0.0009 10 8 5.3999 -4.9526 -0.0018 11 7 7.5131 -4.2771 0.0005 12 6 8.0014 -5.6583 -0.0064 13 1 7.3567 -6.2908 -0.6168 14 6 8.1027 -6.2087 1.4318 15 7 9.3303 -7.0145 1.5053 16 6 9.7946 -7.6617 2.6191 17 1 9.2439 -7.6036 3.5464 18 6 10.9730 -8.3927 2.5565 19 7 11.6439 -8.4640 1.4263 20 14 11.6067 -9.2750 4.0761 21 1 10.6761 -9.0399 5.2092 22 1 11.6942 -10.7319 3.8023 23 1 12.9534 -8.7552 4.4249 24 6 9.9780 -7.0110 0.1811 25 6 9.4690 -5.7193 -0.5060 26 1 9.5087 -5.8123 -1.5913 27 8 10.2082 -4.5789 -0.0644 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 2.3793 1.5834 -1.0276 32 1 1.6085 2.0282 0.5139 33 1 3.1500 1.1383 0.5139 34 1 4.0088 -0.6541 0.8905 35 1 4.0095 -0.6529 -0.8894 36 1 3.7928 -3.1227 -0.8920 37 1 3.7921 -3.1247 0.8880 38 1 6.0484 -2.0972 0.8907 39 1 6.0498 -2.0950 -0.8892 40 1 8.1435 -3.5398 0.0016 41 1 8.1580 -5.3833 2.1416 42 1 7.2349 -6.8301 1.6530 43 1 12.4671 -8.9750 1.3825 44 1 11.0622 -6.9812 0.2892 45 1 9.6786 -7.8897 -0.3902 46 1 11.1313 -4.5728 -0.3524 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220786845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:17 Heat of formation + Delta-G solvation = -93.598853 kcal Electronic energy + Delta-G solvation = -26028.715061 eV Core-core repulsion = 22147.343378 eV Total energy + Delta-G solvation = -3881.371682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.21446 -39.58616 -37.85712 -35.88972 -34.73559 -34.41210 -33.86202 -31.67544 -29.82822 -28.55401 -27.91551 -26.92817 -25.96743 -24.41715 -22.46016 -20.65550 -20.16979 -19.67417 -19.45301 -17.53553 -17.21961 -16.71305 -16.67175 -16.55279 -16.05411 -15.53295 -15.27998 -14.77220 -14.38422 -14.09205 -13.99100 -13.53933 -13.24317 -13.04766 -12.98221 -12.96366 -12.92370 -12.58750 -12.50180 -12.11021 -12.00562 -11.68376 -11.51618 -11.30943 -11.04148 -10.87561 -10.84779 -10.57889 -10.32050 -10.10393 -10.00751 -9.82696 -9.56012 -9.20385 -9.08266 -8.68598 -8.61554 -6.82750 -5.67941 -3.07435 2.35784 2.63793 2.91343 3.39877 3.44052 3.46591 3.49414 4.20572 4.48647 4.57215 4.60130 4.75240 4.77971 4.86867 4.89916 5.02391 5.12564 5.16586 5.24645 5.29604 5.35252 5.40443 5.41547 5.47528 5.50104 5.59113 5.76568 5.96000 6.02738 6.03976 6.09476 6.30665 6.32347 6.61949 6.75583 6.95594 7.00294 7.28232 7.58617 7.73581 7.88036 7.90056 8.13357 8.32971 8.56328 9.20086 9.81019 10.44605 11.37348 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.028528 B = 0.002185 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.239102 B =12810.782176 C =13226.858302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.629 5.629 3 C 0.078 3.922 4 C 0.511 3.489 5 O -0.532 6.532 6 C -0.139 4.139 7 C -0.090 4.090 8 C -0.139 4.139 9 C 0.506 3.494 10 O -0.542 6.542 11 N -0.710 5.710 12 C 0.142 3.858 13 H 0.098 0.902 14 C 0.132 3.868 15 N -0.597 5.597 16 C -0.214 4.214 17 H 0.079 0.921 18 C -0.015 4.015 19 N -0.927 5.927 20 Si 0.917 3.083 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.126 3.874 25 C 0.068 3.932 26 H 0.058 0.942 27 O -0.561 6.561 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.407 0.593 41 H 0.029 0.971 42 H 0.028 0.972 43 H 0.251 0.749 44 H 0.115 0.885 45 H 0.022 0.978 46 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.106 22.580 -6.884 27.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.364 5.364 3 C -0.065 4.065 4 C 0.299 3.701 5 O -0.408 6.408 6 C -0.178 4.178 7 C -0.128 4.128 8 C -0.179 4.179 9 C 0.292 3.708 10 O -0.419 6.419 11 N -0.362 5.362 12 C 0.037 3.963 13 H 0.116 0.884 14 C 0.005 3.995 15 N -0.323 5.323 16 C -0.342 4.342 17 H 0.096 0.904 18 C -0.209 4.209 19 N -0.577 5.577 20 Si 0.748 3.252 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.001 3.999 25 C 0.007 3.993 26 H 0.076 0.924 27 O -0.367 6.367 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.242 0.758 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.062 0.938 44 H 0.133 0.867 45 H 0.040 0.960 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -14.421 21.361 -6.527 26.586 hybrid contribution 1.186 -0.116 0.500 1.292 sum -13.235 21.244 -6.026 25.745 Atomic orbital electron populations 1.21672 0.79385 1.04309 1.01055 1.47793 1.07179 1.06566 1.74872 1.21804 0.97440 0.85259 1.02029 1.20872 0.90651 0.83062 0.75467 1.90739 1.70355 1.30897 1.48781 1.21736 0.91477 1.00372 1.04252 1.21086 0.92575 0.93869 1.05295 1.21654 0.97323 0.94722 1.04248 1.20642 0.82493 0.91441 0.76242 1.90726 1.55261 1.46425 1.49500 1.45875 1.06648 1.09201 1.74466 1.22110 0.93020 0.82689 0.98467 0.88383 1.21592 0.90361 0.94234 0.93358 1.44303 1.22358 1.57765 1.07901 1.19158 1.04127 1.22418 0.88501 0.90360 1.24766 0.97817 1.00822 0.97530 1.69733 1.17996 1.45996 1.23988 0.85951 0.78462 0.79074 0.81761 1.20519 1.21778 1.21781 1.22596 1.01946 0.90464 0.84918 1.23564 0.90664 0.88975 0.96084 0.92422 1.86233 1.26750 1.43825 1.79879 0.89458 0.92339 0.92393 0.92440 0.91011 0.90624 0.88706 0.88792 0.90380 0.90283 0.88907 0.89050 0.75798 0.95342 0.95432 0.93813 0.86734 0.95996 0.77382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 10.68 59.85 0.64 1.17 16 2 N -0.63 -4.82 3.27 -189.51 -0.62 -5.45 16 3 C 0.08 0.29 10.28 59.84 0.62 0.91 16 4 C 0.51 5.40 7.67 -10.98 -0.08 5.32 16 5 O -0.53 -8.11 15.31 5.55 0.08 -8.02 16 6 C -0.14 -1.07 4.25 -27.88 -0.12 -1.19 16 7 C -0.09 -1.02 3.79 -26.74 -0.10 -1.12 16 8 C -0.14 -1.40 5.70 -27.89 -0.16 -1.56 16 9 C 0.51 7.78 7.83 -10.98 -0.09 7.70 16 10 O -0.54 -10.75 15.71 5.55 0.09 -10.66 16 11 N -0.71 -11.01 5.09 -52.03 -0.26 -11.27 16 12 C 0.14 2.70 3.12 -66.10 -0.21 2.49 16 13 H 0.10 1.93 7.69 -51.93 -0.40 1.53 16 14 C 0.13 3.01 6.99 -3.06 -0.02 2.99 16 15 N -0.60 -15.67 3.39 -170.08 -0.58 -16.24 16 16 C -0.21 -6.10 10.27 -15.06 -0.15 -6.25 16 17 H 0.08 2.20 7.83 -52.48 -0.41 1.78 16 18 C -0.01 -0.42 5.49 -17.43 -0.10 -0.51 16 19 N -0.93 -26.73 10.09 55.49 0.56 -26.17 16 20 Si 0.92 22.36 29.55 -169.99 -5.02 17.34 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 C 0.13 2.99 5.62 -2.54 -0.01 2.98 16 25 C 0.07 1.24 4.28 -24.58 -0.11 1.13 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 O -0.56 -9.41 12.23 -35.23 -0.43 -9.84 16 28 H 0.09 0.78 6.90 -51.93 -0.36 0.43 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.07 0.17 8.07 -51.93 -0.42 -0.24 16 33 H 0.08 0.20 6.44 -51.93 -0.33 -0.14 16 34 H 0.09 0.52 7.40 -51.93 -0.38 0.14 16 35 H 0.09 0.50 8.11 -51.93 -0.42 0.08 16 36 H 0.08 1.05 8.06 -51.93 -0.42 0.63 16 37 H 0.08 1.10 8.06 -51.92 -0.42 0.68 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.41 5.50 7.57 -40.82 -0.31 5.19 16 41 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.12 2.98 5.87 -51.93 -0.30 2.67 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.38 5.09 9.12 45.56 0.42 5.50 16 LS Contribution 374.55 15.07 5.64 5.64 Total: -1.00 -37.06 374.55 -7.13 -44.19 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.70 Total: 6.44 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: 0.11 Total: 14.06 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -0.90 Total: -59.14 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.26 Total: -28.53 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.06 -7.13 -44.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220786845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.413 kcal (2) G-P(sol) polarization free energy of solvation -37.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds