Wall clock time and date at job start Fri Apr 10 2020 18:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46495 * 120.00597 * 2 1 4 4 C 1.34776 * 119.99769 * 180.02562 * 2 1 3 5 5 O 1.21287 * 120.00123 * 359.97438 * 4 2 1 6 6 C 1.50702 * 120.00513 * 180.02562 * 4 2 1 7 7 C 1.52995 * 109.47846 * 180.02562 * 6 4 2 8 8 C 1.52990 * 109.47353 * 180.02562 * 7 6 4 9 9 C 1.50703 * 109.47398 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99488 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00290 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27728 * 11 9 8 13 13 H 1.09004 * 110.64443 * 36.40691 * 12 11 9 14 14 C 1.54319 * 110.71865 * 273.26553 * 12 11 9 15 15 N 1.47026 * 107.27305 * 219.44531 * 14 12 11 16 16 C 1.36933 * 125.64795 * 178.97725 * 15 14 12 17 17 H 1.08003 * 120.00259 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00172 * 180.02562 * 16 15 14 19 19 N 1.31626 * 119.99664 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00294 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47321 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47329 * 119.99804 * 20 18 16 23 23 H 1.48503 * 109.47315 * 239.99899 * 20 18 16 24 24 C 1.47415 * 108.70097 * 358.93997 * 15 14 12 25 25 C 1.54908 * 104.83313 * 24.12967 * 24 15 14 26 26 H 1.09002 * 111.00600 * 204.91249 * 25 24 15 27 27 O 1.42898 * 111.00432 * 81.06369 * 25 24 15 28 28 H 1.09003 * 109.47367 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47140 * 299.99983 * 1 2 3 30 30 H 1.09005 * 109.46741 * 59.99614 * 1 2 3 31 31 H 1.08993 * 109.47757 * 270.00569 * 3 2 1 32 32 H 1.09004 * 109.46599 * 30.00466 * 3 2 1 33 33 H 1.09004 * 109.47543 * 149.99375 * 3 2 1 34 34 H 1.08999 * 109.46772 * 59.99331 * 6 4 2 35 35 H 1.09003 * 109.46720 * 300.00556 * 6 4 2 36 36 H 1.08998 * 109.47142 * 59.99444 * 7 6 4 37 37 H 1.09011 * 109.46657 * 300.00002 * 7 6 4 38 38 H 1.08998 * 109.47508 * 59.99597 * 8 7 6 39 39 H 1.09002 * 109.47337 * 299.99883 * 8 7 6 40 40 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 41 41 H 1.09003 * 109.88536 * 338.86823 * 14 12 11 42 42 H 1.09005 * 109.88445 * 99.87296 * 14 12 11 43 43 H 0.96995 * 119.99897 * 180.02562 * 19 18 16 44 44 H 1.09001 * 110.36616 * 142.96574 * 24 15 14 45 45 H 1.08999 * 110.37454 * 265.17780 * 24 15 14 46 46 H 0.96700 * 114.00665 * 67.80752 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5324 -2.2176 -0.0005 6 6 3.6458 -1.1674 0.0001 7 6 4.1558 -2.6099 -0.0014 8 6 5.6857 -2.6099 -0.0001 9 6 6.1881 -4.0308 -0.0009 10 8 5.3999 -4.9526 -0.0018 11 7 7.5131 -4.2771 0.0005 12 6 8.0014 -5.6583 -0.0064 13 1 7.3567 -6.2908 -0.6168 14 6 8.1027 -6.2087 1.4318 15 7 9.3303 -7.0145 1.5053 16 6 9.7946 -7.6617 2.6191 17 1 9.2439 -7.6036 3.5464 18 6 10.9730 -8.3927 2.5565 19 7 11.6439 -8.4640 1.4263 20 14 11.6067 -9.2750 4.0761 21 1 10.6761 -9.0399 5.2092 22 1 11.6942 -10.7319 3.8023 23 1 12.9534 -8.7552 4.4249 24 6 9.9780 -7.0110 0.1811 25 6 9.4690 -5.7193 -0.5060 26 1 9.5087 -5.8123 -1.5913 27 8 10.2082 -4.5789 -0.0644 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 2.3793 1.5834 -1.0276 32 1 1.6085 2.0282 0.5139 33 1 3.1500 1.1383 0.5139 34 1 4.0088 -0.6541 0.8905 35 1 4.0095 -0.6529 -0.8894 36 1 3.7928 -3.1227 -0.8920 37 1 3.7921 -3.1247 0.8880 38 1 6.0484 -2.0972 0.8907 39 1 6.0498 -2.0950 -0.8892 40 1 8.1435 -3.5398 0.0016 41 1 8.1580 -5.3833 2.1416 42 1 7.2349 -6.8301 1.6530 43 1 12.4671 -8.9750 1.3825 44 1 11.0622 -6.9812 0.2892 45 1 9.6786 -7.8897 -0.3902 46 1 11.1313 -4.5728 -0.3524 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220786845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:16 Heat of formation + Delta-G solvation = -124.238182 kcal Electronic energy + Delta-G solvation = -26030.043682 eV Core-core repulsion = 22147.343378 eV Total energy + Delta-G solvation = -3882.700303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.13517 -40.76846 -39.40077 -36.55363 -36.36492 -35.48743 -35.21324 -33.57995 -30.85589 -30.03382 -28.86822 -28.20420 -26.83182 -26.16754 -23.46173 -22.36714 -21.58656 -21.07766 -20.15148 -19.22867 -18.25025 -18.16301 -17.71913 -17.26538 -16.93105 -16.81352 -16.61311 -16.42204 -15.91926 -15.39274 -15.09967 -14.70209 -14.60870 -14.34614 -14.24254 -14.04331 -13.54284 -13.38494 -13.32300 -13.23894 -13.18426 -12.94673 -12.79366 -12.72156 -12.70887 -12.33085 -12.24129 -12.09084 -11.91224 -11.83607 -11.69245 -11.00601 -10.90225 -10.76129 -10.70319 -10.04793 -9.66064 -8.91788 -7.82242 -5.25723 1.45191 1.46258 1.56702 1.62764 1.70841 2.03621 2.27145 2.48605 3.21521 3.28559 3.59427 3.61330 3.83477 3.87054 3.96085 4.08271 4.08922 4.29820 4.32511 4.42522 4.49335 4.53957 4.60951 4.64656 4.69754 4.73836 4.77371 4.83886 4.85303 4.92780 5.02024 5.04465 5.18957 5.33422 5.39854 5.45095 5.53686 5.56537 5.70600 6.24633 6.36703 6.68816 6.93015 7.07621 7.18931 7.37286 7.71623 8.34594 9.19947 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.028528 B = 0.002185 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.239102 B =12810.782176 C =13226.858302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.626 5.626 3 C 0.069 3.931 4 C 0.497 3.503 5 O -0.597 6.597 6 C -0.126 4.126 7 C -0.087 4.087 8 C -0.124 4.124 9 C 0.499 3.501 10 O -0.595 6.595 11 N -0.698 5.698 12 C 0.153 3.847 13 H 0.089 0.911 14 C 0.132 3.868 15 N -0.617 5.617 16 C -0.241 4.241 17 H 0.072 0.928 18 C -0.062 4.062 19 N -0.945 5.945 20 Si 0.982 3.018 21 H -0.273 1.273 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.125 3.875 25 C 0.094 3.906 26 H 0.095 0.905 27 O -0.560 6.560 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.046 0.954 37 H 0.040 0.960 38 H 0.125 0.875 39 H 0.134 0.866 40 H 0.421 0.579 41 H 0.024 0.976 42 H 0.003 0.997 43 H 0.250 0.750 44 H 0.093 0.907 45 H -0.002 1.002 46 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.068 26.223 -7.274 29.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.359 5.359 3 C -0.072 4.072 4 C 0.287 3.713 5 O -0.478 6.478 6 C -0.165 4.165 7 C -0.126 4.126 8 C -0.163 4.163 9 C 0.288 3.712 10 O -0.475 6.475 11 N -0.351 5.351 12 C 0.046 3.954 13 H 0.107 0.893 14 C 0.005 3.995 15 N -0.343 5.343 16 C -0.370 4.370 17 H 0.090 0.910 18 C -0.255 4.255 19 N -0.595 5.595 20 Si 0.810 3.190 21 H -0.198 1.198 22 H -0.218 1.218 23 H -0.211 1.211 24 C -0.001 4.001 25 C 0.033 3.967 26 H 0.112 0.888 27 O -0.368 6.368 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.143 0.857 39 H 0.152 0.848 40 H 0.259 0.741 41 H 0.042 0.958 42 H 0.021 0.979 43 H 0.060 0.940 44 H 0.110 0.890 45 H 0.016 0.984 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -13.357 25.111 -6.931 29.275 hybrid contribution 0.816 -1.220 0.635 1.599 sum -12.542 23.891 -6.297 27.708 Atomic orbital electron populations 1.21746 0.79403 1.02861 1.02884 1.47981 1.07619 1.07267 1.73078 1.22125 0.98079 0.83491 1.03529 1.21501 0.92028 0.82952 0.74781 1.90716 1.71700 1.33315 1.52075 1.21716 0.89230 0.98140 1.07426 1.20960 0.93660 0.95916 1.02026 1.21688 0.95850 0.91058 1.07711 1.21707 0.81720 0.93348 0.74438 1.90718 1.56460 1.48668 1.51675 1.45739 1.07221 1.07902 1.74214 1.21737 0.93729 0.84552 0.95411 0.89339 1.21636 0.88359 0.93342 0.96163 1.44576 1.23551 1.57912 1.08241 1.19423 1.04711 1.23557 0.89318 0.91025 1.25576 0.97909 1.01495 1.00471 1.69952 1.17975 1.46106 1.25419 0.84959 0.77885 0.77524 0.78610 1.19790 1.21796 1.21115 1.22526 1.00593 0.92712 0.84249 1.23212 0.89625 0.86606 0.97260 0.88752 1.86194 1.28133 1.42315 1.80184 0.92555 0.90498 0.90499 0.90970 0.89446 0.88853 0.85463 0.85185 0.93499 0.94106 0.85694 0.84808 0.74105 0.95828 0.97885 0.94018 0.88967 0.98426 0.75347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 10.68 127.77 1.37 2.31 16 2 N -0.63 -8.45 3.27 -871.88 -2.85 -11.31 16 3 C 0.07 0.25 10.28 127.77 1.31 1.56 16 4 C 0.50 10.19 7.67 87.66 0.67 10.86 16 5 O -0.60 -19.37 15.31 -3.05 -0.05 -19.42 16 6 C -0.13 -1.57 4.25 29.85 0.13 -1.44 16 7 C -0.09 -1.90 3.79 30.59 0.12 -1.78 16 8 C -0.12 -2.09 5.70 29.85 0.17 -1.92 16 9 C 0.50 14.79 7.83 87.66 0.69 15.48 16 10 O -0.59 -24.31 15.71 -3.04 -0.05 -24.36 16 11 N -0.70 -20.31 5.09 -436.92 -2.22 -22.54 16 12 C 0.15 5.71 3.12 46.18 0.14 5.86 16 13 H 0.09 3.52 7.69 -2.39 -0.02 3.50 16 14 C 0.13 6.19 6.99 86.73 0.61 6.80 16 15 N -0.62 -33.17 3.39 -692.00 -2.35 -35.52 16 16 C -0.24 -14.10 10.27 84.03 0.86 -13.24 16 17 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 18 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 19 N -0.94 -55.19 10.09 21.65 0.22 -54.97 16 20 Si 0.98 46.32 29.55 68.60 2.03 48.35 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 C 0.12 5.98 5.62 86.86 0.49 6.47 16 25 C 0.09 3.27 4.28 31.98 0.14 3.41 16 26 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 27 O -0.56 -17.25 12.23 -148.98 -1.82 -19.08 16 28 H 0.06 1.09 6.90 -2.39 -0.02 1.07 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.09 0.08 8.07 -2.39 -0.02 0.06 16 33 H 0.09 0.03 6.44 -2.38 -0.02 0.01 16 34 H 0.13 0.80 7.40 -2.39 -0.02 0.78 16 35 H 0.13 0.73 8.11 -2.39 -0.02 0.71 16 36 H 0.05 1.30 8.06 -2.39 -0.02 1.28 16 37 H 0.04 1.18 8.06 -2.38 -0.02 1.16 16 38 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.42 9.90 7.57 -92.71 -0.70 9.20 16 41 H 0.02 1.12 8.03 -2.39 -0.02 1.10 16 42 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 43 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 44 H 0.09 4.86 5.87 -2.39 -0.01 4.84 16 45 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 46 H 0.40 9.47 9.12 -74.06 -0.68 8.79 16 Total: -1.00 -87.67 374.55 -0.32 -87.99 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -0.38 Total: 19.54 kcal Atomic # 6 Polarization: 24.15 SS G_CDS: 7.16 Total: 31.31 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -7.21 Total: -124.34 kcal Atomic # 8 Polarization: -60.93 SS G_CDS: -1.92 Total: -62.85 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -87.67 -0.32 -87.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220786845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.245 kcal (2) G-P(sol) polarization free energy of solvation -87.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds