Wall clock time and date at job start Fri Apr 10 2020 18:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46851 * 2 1 4 4 C 1.53004 * 109.47243 * 119.99433 * 2 1 3 5 5 C 1.52997 * 109.46897 * 294.99936 * 4 2 1 6 6 C 1.53003 * 109.47000 * 179.97438 * 5 4 2 7 7 O 1.42903 * 109.47368 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47213 * 239.99994 * 2 1 3 9 9 N 1.46492 * 109.47507 * 64.99592 * 8 2 1 10 10 C 1.34776 * 120.00307 * 179.97438 * 9 8 2 11 11 O 1.21592 * 119.99842 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00213 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00127 * 180.02562 * 12 10 9 14 14 C 1.53045 * 109.45994 * 275.03471 * 13 12 10 15 15 C 1.53191 * 109.30906 * 178.60262 * 14 13 12 16 16 N 1.46921 * 108.76660 * 54.65143 * 15 14 13 17 17 C 1.36941 * 120.62655 * 126.40551 * 16 15 14 18 18 H 1.07992 * 120.00434 * 331.82455 * 17 16 15 19 19 C 1.38811 * 119.99687 * 151.81967 * 17 16 15 20 20 N 1.31619 * 120.00257 * 343.08430 * 19 17 16 21 21 Si 1.86803 * 119.99907 * 163.07999 * 19 17 16 22 22 H 1.48493 * 109.47419 * 60.00226 * 21 19 17 23 23 H 1.48497 * 109.47099 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46929 * 300.00076 * 21 19 17 25 25 C 1.46917 * 118.74098 * 306.38269 * 16 15 14 26 26 C 1.53036 * 109.46136 * 154.97576 * 13 12 10 27 27 H 1.09002 * 109.47064 * 300.00511 * 1 2 3 28 28 H 1.09001 * 109.47072 * 60.00399 * 1 2 3 29 29 H 1.09002 * 109.46892 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.46938 * 55.00375 * 4 2 1 31 31 H 1.09002 * 109.46951 * 175.00420 * 4 2 1 32 32 H 1.08992 * 109.47685 * 299.99982 * 5 4 2 33 33 H 1.09002 * 109.46925 * 60.00468 * 5 4 2 34 34 H 1.09000 * 109.47473 * 300.00869 * 6 5 4 35 35 H 1.09005 * 109.46953 * 60.00275 * 6 5 4 36 36 H 0.96700 * 113.99667 * 180.02562 * 7 6 5 37 37 H 1.09007 * 109.47058 * 185.00261 * 8 2 1 38 38 H 1.09002 * 109.46611 * 304.99026 * 8 2 1 39 39 H 0.97002 * 119.99819 * 0.02562 * 9 8 2 40 40 H 0.97002 * 119.99913 * 0.02562 * 12 10 9 41 41 H 1.09003 * 109.45836 * 35.00146 * 13 12 10 42 42 H 1.09007 * 109.49072 * 298.56387 * 14 13 12 43 43 H 1.08998 * 109.50056 * 58.65616 * 14 13 12 44 44 H 1.09002 * 109.59350 * 294.86071 * 15 14 13 45 45 H 1.09006 * 109.70039 * 174.50456 * 15 14 13 46 46 H 0.97004 * 120.00047 * 180.02562 * 20 19 17 47 47 H 1.09005 * 109.58906 * 293.82058 * 25 16 15 48 48 H 1.09002 * 109.70471 * 173.46660 * 25 16 15 49 49 H 1.08995 * 109.49762 * 301.34423 * 26 13 12 50 50 H 1.08999 * 109.49601 * 61.43632 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.6353 0.0692 2.4953 6 6 2.1448 -0.6523 3.7446 7 8 1.7663 0.0856 4.9085 8 6 2.0400 -0.7212 -1.2492 9 7 1.6525 0.0352 -2.4423 10 6 1.9965 -0.4132 -3.6659 11 8 2.6282 -1.4460 -3.7794 12 7 1.6394 0.2824 -4.7636 13 6 2.0129 -0.2053 -6.0936 14 6 3.4282 0.2689 -6.4317 15 6 3.8284 -0.2720 -7.8079 16 7 2.8085 0.1267 -8.7874 17 6 3.1621 0.7898 -9.9322 18 1 4.0434 1.4139 -9.9444 19 6 2.3878 0.6598 -11.0769 20 7 1.5272 -0.3307 -11.1803 21 14 2.5670 1.8908 -12.4705 22 1 3.9627 1.8655 -12.9768 23 1 1.6347 1.5333 -13.5696 24 1 2.2456 3.2524 -11.9726 25 6 1.4022 -0.2001 -8.5156 26 6 1.0291 0.3397 -7.1314 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6055 -1.7196 1.2953 31 1 3.1264 -0.7993 1.2057 32 1 2.0698 1.0677 2.4493 33 1 0.5490 0.1473 2.5389 34 1 1.7099 -1.6507 3.7904 35 1 3.2311 -0.7308 3.7012 36 1 2.0572 -0.3143 5.7395 37 1 3.1264 -0.7995 -1.2055 38 1 1.6055 -1.7199 -1.2950 39 1 1.1488 0.8593 -2.3518 40 1 1.1352 1.1061 -4.6730 41 1 1.9833 -1.2949 -6.1023 42 1 3.4526 1.3586 -6.4477 43 1 4.1251 -0.1000 -5.6792 44 1 3.8923 -1.3595 -7.7688 45 1 4.7948 0.1405 -8.0981 46 1 0.9864 -0.4217 -11.9804 47 1 1.2680 -1.2817 -8.5343 48 1 0.7653 0.2602 -9.2711 49 1 0.0183 0.0212 -6.8769 50 1 1.0764 1.4287 -7.1407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226859861.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:39 Heat of formation + Delta-G solvation = -85.557951 kcal Electronic energy + Delta-G solvation = -26103.818743 eV Core-core repulsion = 22358.628834 eV Total energy + Delta-G solvation = -3745.189908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.98878 -38.25266 -37.48006 -36.70531 -34.33574 -34.02781 -32.10986 -31.10104 -30.03078 -29.25002 -27.06604 -25.86198 -24.69053 -22.37785 -22.12215 -21.65770 -20.77021 -20.34672 -19.37581 -18.05568 -17.72968 -16.78552 -16.36672 -16.12177 -15.55802 -14.96885 -14.85850 -14.77974 -14.39055 -14.15089 -13.69259 -13.62474 -13.49307 -13.17870 -13.08934 -12.91344 -12.60554 -12.35399 -12.28985 -11.88071 -11.68490 -11.42070 -11.22676 -11.08446 -11.07001 -10.99081 -10.81307 -10.69622 -10.46419 -10.42469 -10.24282 -10.01130 -9.97797 -9.71882 -9.50606 -9.11312 -8.55252 -8.40112 -6.65568 -5.77347 -3.19420 2.84019 3.39696 3.43117 3.45265 3.46455 3.69124 4.34725 4.39416 4.44973 4.51374 4.54937 4.65657 4.85356 4.93277 5.12910 5.19699 5.23107 5.36069 5.36990 5.42772 5.47231 5.54730 5.58393 5.62032 5.65751 5.68913 5.73826 5.93649 5.94446 5.98841 6.12438 6.33211 6.40444 6.48600 6.54234 6.62030 6.65477 6.84327 6.95531 7.03087 7.13217 7.16330 7.35061 7.64699 7.81117 8.20348 8.47022 8.81585 9.23160 9.86480 10.43838 11.31554 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.046121 B = 0.001864 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.949051 B =15021.348618 C =15125.650577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.102 4.102 3 H 0.078 0.922 4 C -0.110 4.110 5 C -0.121 4.121 6 C 0.073 3.927 7 O -0.577 6.577 8 C 0.144 3.856 9 N -0.752 5.752 10 C 0.701 3.299 11 O -0.592 6.592 12 N -0.740 5.740 13 C 0.169 3.831 14 C -0.139 4.139 15 C 0.147 3.853 16 N -0.592 5.592 17 C -0.252 4.252 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.903 3.097 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.175 3.825 26 C -0.146 4.146 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.379 0.621 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.393 0.607 40 H 0.390 0.610 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.020 0.980 45 H 0.055 0.945 46 H 0.254 0.746 47 H 0.021 0.979 48 H 0.091 0.909 49 H 0.053 0.947 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.520 1.432 27.919 28.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.121 4.121 3 H 0.096 0.904 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.004 4.004 7 O -0.383 6.383 8 C 0.020 3.980 9 N -0.409 5.409 10 C 0.401 3.599 11 O -0.470 6.470 12 N -0.393 5.393 13 C 0.065 3.935 14 C -0.179 4.179 15 C 0.020 3.980 16 N -0.315 5.315 17 C -0.382 4.382 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.733 3.267 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.211 1.211 25 C 0.048 3.952 26 C -0.186 4.186 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.226 0.774 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.227 0.773 40 H 0.223 0.777 41 H 0.099 0.901 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.039 0.961 48 H 0.109 0.891 49 H 0.072 0.928 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.288 0.789 27.173 27.281 hybrid contribution -0.167 0.998 -0.204 1.033 sum -2.455 1.787 26.969 27.139 Atomic orbital electron populations 1.21918 0.94591 1.02389 1.01886 1.21364 0.96597 1.00295 0.93823 0.90388 1.21457 1.01421 0.99269 0.92664 1.21564 1.02244 0.99829 0.92211 1.22231 0.98249 0.94317 0.85627 1.86474 1.81624 1.53597 1.16598 1.21173 0.99790 0.94914 0.82154 1.45145 1.62084 1.28806 1.04821 1.16028 0.79948 0.83585 0.80388 1.90918 1.45342 1.24977 1.85770 1.45548 1.60334 1.27704 1.05739 1.20900 0.94826 0.99215 0.78552 1.22390 0.95920 1.00643 0.98996 1.20880 0.92892 0.96388 0.87799 1.44079 1.00857 1.66566 1.20015 1.19156 1.11088 1.20191 0.87771 0.91710 1.25051 1.00326 0.97273 0.97003 1.70019 1.27535 1.29051 1.28185 0.86363 0.77471 0.81208 0.81675 1.20887 1.21660 1.21100 1.20734 0.86452 0.96990 0.91010 1.22540 0.96925 1.00906 0.98235 0.92181 0.92526 0.92319 0.91258 0.91270 0.91183 0.90865 0.93623 0.93615 0.77382 0.91779 0.91728 0.77349 0.77698 0.90124 0.92507 0.92737 0.96176 0.92626 0.93576 0.96106 0.89070 0.92808 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.82 37.16 0.33 -0.60 16 2 C -0.10 -0.65 2.42 -90.62 -0.22 -0.87 16 3 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.11 -0.62 4.68 -26.73 -0.13 -0.75 16 5 C -0.12 -0.72 5.34 -26.73 -0.14 -0.87 16 6 C 0.07 0.41 7.05 37.16 0.26 0.67 16 7 O -0.58 -3.92 13.66 -35.23 -0.48 -4.40 16 8 C 0.14 1.37 5.06 -4.05 -0.02 1.35 16 9 N -0.75 -8.03 5.29 -65.23 -0.34 -8.38 16 10 C 0.70 10.70 8.53 -86.92 -0.74 9.96 16 11 O -0.59 -11.69 16.01 5.28 0.08 -11.60 16 12 N -0.74 -10.70 5.08 -58.63 -0.30 -10.99 16 13 C 0.17 3.03 2.42 -67.89 -0.16 2.87 16 14 C -0.14 -2.62 5.65 -26.61 -0.15 -2.77 16 15 C 0.15 3.24 6.52 -3.71 -0.02 3.22 16 16 N -0.59 -14.96 2.99 -172.33 -0.52 -15.48 16 17 C -0.25 -6.95 9.58 -15.06 -0.14 -7.09 16 18 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 19 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 20 N -0.90 -26.18 11.19 55.49 0.62 -25.55 16 21 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 C 0.17 4.14 5.30 -3.72 -0.02 4.12 16 26 C -0.15 -2.71 5.55 -26.62 -0.15 -2.86 16 27 H 0.06 0.33 6.57 -51.93 -0.34 -0.01 16 28 H 0.06 0.35 7.18 -51.93 -0.37 -0.02 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.47 6.57 -51.93 -0.34 0.12 16 34 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.38 0.88 9.12 45.56 0.42 1.29 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.39 3.11 7.67 -40.82 -0.31 2.80 16 40 H 0.39 4.48 8.62 -40.82 -0.35 4.13 16 41 H 0.08 1.65 7.58 -51.93 -0.39 1.25 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.09 2.39 6.07 -51.93 -0.31 2.08 16 49 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 392.58 15.07 5.92 5.92 Total: -1.00 -33.89 392.58 -9.76 -43.65 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -8.31 Total: 3.89 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -1.40 Total: 6.35 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -0.54 Total: -60.40 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.40 Total: -16.00 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.89 -9.76 -43.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226859861.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.913 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds