Wall clock time and date at job start Fri Apr 10 2020 18:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46851 * 2 1 4 4 C 1.53004 * 109.47243 * 119.99433 * 2 1 3 5 5 C 1.52997 * 109.46897 * 294.99936 * 4 2 1 6 6 C 1.53003 * 109.47000 * 179.97438 * 5 4 2 7 7 O 1.42903 * 109.47368 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47213 * 239.99994 * 2 1 3 9 9 N 1.46492 * 109.47507 * 64.99592 * 8 2 1 10 10 C 1.34776 * 120.00307 * 179.97438 * 9 8 2 11 11 O 1.21592 * 119.99842 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00213 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00127 * 180.02562 * 12 10 9 14 14 C 1.53045 * 109.45994 * 275.03471 * 13 12 10 15 15 C 1.53191 * 109.30906 * 178.60262 * 14 13 12 16 16 N 1.46921 * 108.76660 * 54.65143 * 15 14 13 17 17 C 1.36941 * 120.62655 * 126.40551 * 16 15 14 18 18 H 1.07992 * 120.00434 * 331.82455 * 17 16 15 19 19 C 1.38811 * 119.99687 * 151.81967 * 17 16 15 20 20 N 1.31619 * 120.00257 * 343.08430 * 19 17 16 21 21 Si 1.86803 * 119.99907 * 163.07999 * 19 17 16 22 22 H 1.48493 * 109.47419 * 60.00226 * 21 19 17 23 23 H 1.48497 * 109.47099 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46929 * 300.00076 * 21 19 17 25 25 C 1.46917 * 118.74098 * 306.38269 * 16 15 14 26 26 C 1.53036 * 109.46136 * 154.97576 * 13 12 10 27 27 H 1.09002 * 109.47064 * 300.00511 * 1 2 3 28 28 H 1.09001 * 109.47072 * 60.00399 * 1 2 3 29 29 H 1.09002 * 109.46892 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.46938 * 55.00375 * 4 2 1 31 31 H 1.09002 * 109.46951 * 175.00420 * 4 2 1 32 32 H 1.08992 * 109.47685 * 299.99982 * 5 4 2 33 33 H 1.09002 * 109.46925 * 60.00468 * 5 4 2 34 34 H 1.09000 * 109.47473 * 300.00869 * 6 5 4 35 35 H 1.09005 * 109.46953 * 60.00275 * 6 5 4 36 36 H 0.96700 * 113.99667 * 180.02562 * 7 6 5 37 37 H 1.09007 * 109.47058 * 185.00261 * 8 2 1 38 38 H 1.09002 * 109.46611 * 304.99026 * 8 2 1 39 39 H 0.97002 * 119.99819 * 0.02562 * 9 8 2 40 40 H 0.97002 * 119.99913 * 0.02562 * 12 10 9 41 41 H 1.09003 * 109.45836 * 35.00146 * 13 12 10 42 42 H 1.09007 * 109.49072 * 298.56387 * 14 13 12 43 43 H 1.08998 * 109.50056 * 58.65616 * 14 13 12 44 44 H 1.09002 * 109.59350 * 294.86071 * 15 14 13 45 45 H 1.09006 * 109.70039 * 174.50456 * 15 14 13 46 46 H 0.97004 * 120.00047 * 180.02562 * 20 19 17 47 47 H 1.09005 * 109.58906 * 293.82058 * 25 16 15 48 48 H 1.09002 * 109.70471 * 173.46660 * 25 16 15 49 49 H 1.08995 * 109.49762 * 301.34423 * 26 13 12 50 50 H 1.08999 * 109.49601 * 61.43632 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.6353 0.0692 2.4953 6 6 2.1448 -0.6523 3.7446 7 8 1.7663 0.0856 4.9085 8 6 2.0400 -0.7212 -1.2492 9 7 1.6525 0.0352 -2.4423 10 6 1.9965 -0.4132 -3.6659 11 8 2.6282 -1.4460 -3.7794 12 7 1.6394 0.2824 -4.7636 13 6 2.0129 -0.2053 -6.0936 14 6 3.4282 0.2689 -6.4317 15 6 3.8284 -0.2720 -7.8079 16 7 2.8085 0.1267 -8.7874 17 6 3.1621 0.7898 -9.9322 18 1 4.0434 1.4139 -9.9444 19 6 2.3878 0.6598 -11.0769 20 7 1.5272 -0.3307 -11.1803 21 14 2.5670 1.8908 -12.4705 22 1 3.9627 1.8655 -12.9768 23 1 1.6347 1.5333 -13.5696 24 1 2.2456 3.2524 -11.9726 25 6 1.4022 -0.2001 -8.5156 26 6 1.0291 0.3397 -7.1314 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6055 -1.7196 1.2953 31 1 3.1264 -0.7993 1.2057 32 1 2.0698 1.0677 2.4493 33 1 0.5490 0.1473 2.5389 34 1 1.7099 -1.6507 3.7904 35 1 3.2311 -0.7308 3.7012 36 1 2.0572 -0.3143 5.7395 37 1 3.1264 -0.7995 -1.2055 38 1 1.6055 -1.7199 -1.2950 39 1 1.1488 0.8593 -2.3518 40 1 1.1352 1.1061 -4.6730 41 1 1.9833 -1.2949 -6.1023 42 1 3.4526 1.3586 -6.4477 43 1 4.1251 -0.1000 -5.6792 44 1 3.8923 -1.3595 -7.7688 45 1 4.7948 0.1405 -8.0981 46 1 0.9864 -0.4217 -11.9804 47 1 1.2680 -1.2817 -8.5343 48 1 0.7653 0.2602 -9.2711 49 1 0.0183 0.0212 -6.8769 50 1 1.0764 1.4287 -7.1407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226859861.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:38 Heat of formation + Delta-G solvation = -110.806545 kcal Electronic energy + Delta-G solvation = -26104.913604 eV Core-core repulsion = 22358.628834 eV Total energy + Delta-G solvation = -3746.284769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.20477 -39.28424 -38.54744 -37.42292 -35.94139 -34.96392 -33.82281 -32.03169 -31.60349 -30.87327 -27.76439 -26.96800 -26.08261 -23.96735 -23.63883 -22.47210 -21.80716 -21.15290 -20.98228 -19.32677 -18.57444 -18.20037 -17.44920 -16.87524 -16.73772 -16.45829 -15.90055 -15.75038 -15.45460 -15.36630 -15.24906 -15.05449 -14.74130 -14.43919 -14.11052 -14.02562 -13.72959 -13.62016 -13.19844 -12.98843 -12.91850 -12.56708 -12.53392 -12.43756 -12.22383 -12.16026 -12.02315 -11.86158 -11.77068 -11.58363 -11.55656 -11.49049 -11.37420 -11.17384 -10.83742 -10.54177 -10.28051 -9.69642 -8.69804 -7.86738 -5.32584 1.49727 1.51382 1.58708 1.74597 2.20887 2.53059 3.21148 3.29577 3.43954 3.67991 3.84736 3.89598 3.92233 4.05845 4.08295 4.17524 4.35932 4.39110 4.47439 4.49877 4.62368 4.66371 4.69723 4.76018 4.78453 4.83321 4.87773 4.90050 4.95694 5.03816 5.07960 5.12144 5.17245 5.19147 5.23160 5.30743 5.44343 5.47829 5.48534 5.57522 5.63110 5.65483 5.71324 6.07995 6.39868 6.89642 7.15416 7.16977 7.65065 7.84886 8.38192 9.20233 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.046121 B = 0.001864 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.949051 B =15021.348618 C =15125.650577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 H 0.087 0.913 4 C -0.106 4.106 5 C -0.118 4.118 6 C 0.070 3.930 7 O -0.600 6.600 8 C 0.144 3.856 9 N -0.731 5.731 10 C 0.698 3.302 11 O -0.639 6.639 12 N -0.727 5.727 13 C 0.181 3.819 14 C -0.123 4.123 15 C 0.144 3.856 16 N -0.608 5.608 17 C -0.266 4.266 18 H 0.067 0.933 19 C -0.049 4.049 20 N -0.935 5.935 21 Si 0.970 3.030 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.276 1.276 25 C 0.179 3.821 26 C -0.127 4.127 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.396 0.604 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.410 0.590 40 H 0.409 0.591 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.006 0.994 45 H 0.057 0.943 46 H 0.251 0.749 47 H -0.006 1.006 48 H 0.064 0.936 49 H 0.076 0.924 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.823 3.202 29.638 29.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 H 0.105 0.895 4 C -0.144 4.144 5 C -0.156 4.156 6 C -0.008 4.008 7 O -0.408 6.408 8 C 0.019 3.981 9 N -0.388 5.388 10 C 0.397 3.603 11 O -0.521 6.521 12 N -0.382 5.382 13 C 0.076 3.924 14 C -0.163 4.163 15 C 0.018 3.982 16 N -0.332 5.332 17 C -0.396 4.396 18 H 0.085 0.915 19 C -0.244 4.244 20 N -0.581 5.581 21 Si 0.798 3.202 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.201 1.201 25 C 0.052 3.948 26 C -0.167 4.167 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.246 0.754 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.247 0.753 40 H 0.246 0.754 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.024 0.976 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.012 0.988 48 H 0.082 0.918 49 H 0.095 0.905 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.608 2.609 28.969 29.203 hybrid contribution -0.038 0.381 -0.669 0.771 sum -2.646 2.990 28.300 28.580 Atomic orbital electron populations 1.21915 0.94125 1.02244 1.02414 1.21277 0.96822 1.00339 0.92449 0.89503 1.21412 1.01563 0.99260 0.92149 1.21521 1.01948 0.99590 0.92505 1.22291 0.98774 0.94486 0.85210 1.86421 1.82049 1.54544 1.17828 1.21268 0.99264 0.94797 0.82736 1.44980 1.61063 1.29181 1.03591 1.16190 0.79612 0.83005 0.81451 1.90896 1.47491 1.27130 1.86553 1.45127 1.60431 1.28331 1.04281 1.20474 0.94169 0.97650 0.80136 1.22179 0.96523 1.00874 0.96754 1.20966 0.92531 0.95692 0.88993 1.44328 1.01975 1.66673 1.20182 1.19496 1.11179 1.20217 0.88703 0.91497 1.25822 1.00313 0.98885 0.99405 1.70182 1.28506 1.30721 1.28698 0.85309 0.77330 0.79095 0.78486 1.20326 1.22051 1.20138 1.20564 0.85595 0.95301 0.93315 1.22250 0.98119 1.01227 0.95080 0.91332 0.92327 0.92834 0.91016 0.91049 0.91732 0.91221 0.92792 0.92884 0.75404 0.92766 0.92887 0.75308 0.75443 0.92799 0.91550 0.92479 0.97605 0.92416 0.94011 0.98814 0.91785 0.90542 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.82 71.98 0.63 -0.87 16 2 C -0.09 -0.97 2.42 -10.79 -0.03 -0.99 16 3 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 4 C -0.11 -1.01 4.68 30.59 0.14 -0.87 16 5 C -0.12 -1.21 5.34 30.59 0.16 -1.05 16 6 C 0.07 0.67 7.05 71.98 0.51 1.18 16 7 O -0.60 -7.30 13.66 -148.98 -2.04 -9.34 16 8 C 0.14 2.51 5.06 86.38 0.44 2.95 16 9 N -0.73 -14.08 5.29 -478.54 -2.53 -16.61 16 10 C 0.70 20.25 8.53 179.06 1.53 21.78 16 11 O -0.64 -25.04 16.01 -4.01 -0.06 -25.10 16 12 N -0.73 -19.45 5.08 -457.67 -2.33 -21.77 16 13 C 0.18 6.32 2.42 45.02 0.11 6.43 16 14 C -0.12 -4.52 5.65 30.67 0.17 -4.35 16 15 C 0.14 6.40 6.52 86.36 0.56 6.96 16 16 N -0.61 -31.05 2.99 -699.13 -2.09 -33.14 16 17 C -0.27 -14.70 9.58 84.03 0.81 -13.90 16 18 H 0.07 3.60 7.88 -2.91 -0.02 3.57 16 19 C -0.05 -2.72 4.92 84.86 0.42 -2.30 16 20 N -0.94 -55.34 11.19 21.65 0.24 -55.09 16 21 Si 0.97 44.58 29.59 68.60 2.03 46.60 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 25 C 0.18 8.61 5.30 86.36 0.46 9.07 16 26 C -0.13 -4.55 5.55 30.67 0.17 -4.38 16 27 H 0.07 0.60 6.57 -2.39 -0.02 0.59 16 28 H 0.06 0.57 7.18 -2.39 -0.02 0.55 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.76 6.57 -2.39 -0.02 0.75 16 34 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 36 H 0.40 1.30 9.12 -74.06 -0.68 0.62 16 37 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.41 5.21 7.67 -92.71 -0.71 4.50 16 40 H 0.41 8.01 8.62 -92.71 -0.80 7.21 16 41 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 42 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.06 2.48 7.93 -2.38 -0.02 2.46 16 46 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 47 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 48 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 49 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 50 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -74.02 392.58 -1.94 -75.96 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -1.25 Total: 18.83 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 6.08 Total: 19.65 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -6.71 Total: -126.62 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -2.10 Total: -34.44 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -74.02 -1.94 -75.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226859861.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.844 kcal (2) G-P(sol) polarization free energy of solvation -74.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds