Wall clock time and date at job start Fri Apr 10 2020 18:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 114.00026 * 2 1 4 4 C 1.50702 * 109.47133 * 179.97438 * 3 2 1 5 5 O 1.21281 * 120.00101 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99970 * 179.97438 * 4 3 2 7 7 C 1.46503 * 119.99983 * 0.02562 * 6 4 3 8 8 C 1.46505 * 120.00182 * 179.97438 * 6 4 3 9 9 C 1.50707 * 109.47092 * 270.00187 * 8 6 4 10 10 O 1.21287 * 119.99837 * 359.97438 * 9 8 6 11 11 N 1.34772 * 120.00011 * 180.02562 * 9 8 6 12 12 C 1.46500 * 119.99732 * 359.97438 * 11 9 8 13 13 C 1.46499 * 119.99930 * 180.02562 * 11 9 8 14 14 C 1.52999 * 109.47467 * 95.35544 * 13 11 9 15 15 H 1.09003 * 112.73828 * 44.42350 * 14 13 11 16 16 C 1.53490 * 113.46849 * 273.68126 * 14 13 11 17 17 C 1.53610 * 83.30661 * 219.16824 * 16 14 13 18 18 N 1.47062 * 113.46627 * 175.16945 * 14 13 11 19 19 C 1.36941 * 136.06111 * 321.92639 * 18 14 13 20 20 H 1.08001 * 119.99659 * 358.22570 * 19 18 14 21 21 C 1.38805 * 120.00393 * 178.21522 * 19 18 14 22 22 N 1.31620 * 119.99900 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00307 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47264 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47230 * 120.00145 * 23 21 19 26 26 H 1.48498 * 109.47246 * 240.00327 * 23 21 19 27 27 H 1.09006 * 109.47010 * 59.99787 * 1 2 3 28 28 H 1.08995 * 109.47604 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46983 * 300.00152 * 1 2 3 30 30 H 1.08999 * 109.47198 * 59.99975 * 3 2 1 31 31 H 1.08997 * 109.47126 * 299.99959 * 3 2 1 32 32 H 1.09003 * 109.47122 * 269.99502 * 7 6 4 33 33 H 1.08998 * 109.47210 * 30.00504 * 7 6 4 34 34 H 1.09001 * 109.47063 * 150.00026 * 7 6 4 35 35 H 1.08999 * 109.46711 * 29.99608 * 8 6 4 36 36 H 1.08997 * 109.47297 * 150.00193 * 8 6 4 37 37 H 1.09000 * 109.46489 * 84.81394 * 12 11 9 38 38 H 1.09005 * 109.46782 * 204.80532 * 12 11 9 39 39 H 1.09000 * 109.47721 * 324.80963 * 12 11 9 40 40 H 1.09004 * 109.46856 * 215.35557 * 13 11 9 41 41 H 1.09000 * 109.47193 * 335.35352 * 13 11 9 42 42 H 1.09003 * 114.20918 * 332.73764 * 16 14 13 43 43 H 1.09004 * 114.20798 * 105.56588 * 16 14 13 44 44 H 1.08995 * 113.41412 * 271.24065 * 17 16 14 45 45 H 1.09002 * 113.55918 * 140.82079 * 17 16 14 46 46 H 0.96998 * 120.00496 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0916 0.0015 6 7 4.2764 2.2968 0.0002 7 6 3.6464 3.6194 -0.0003 8 6 5.7369 2.1812 0.0014 9 6 6.2366 2.1427 1.4227 10 8 5.4502 2.2062 2.3439 11 7 7.5574 2.0389 1.6700 12 6 8.5072 1.9628 0.5573 13 6 8.0431 2.0010 3.0517 14 6 8.2261 0.5460 3.4882 15 1 8.7183 -0.0627 2.7297 16 6 6.9458 -0.0903 4.0466 17 6 7.9169 -0.7336 5.0479 18 7 8.8192 0.4065 4.8267 19 6 9.7858 1.0536 5.5493 20 1 10.3285 1.8771 5.1092 21 6 10.0680 0.6512 6.8474 22 7 9.4069 -0.3526 7.3837 23 14 11.3861 1.5344 7.8334 24 1 11.9767 2.6197 7.0096 25 1 10.7812 2.1167 9.0583 26 1 12.4478 0.5694 8.2163 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.4902 3.9471 -1.0281 33 1 2.6867 3.5649 0.5136 34 1 4.2936 4.3304 0.5133 35 1 6.0291 1.2648 -0.5113 36 1 6.1697 3.0392 -0.5128 37 1 8.7528 2.9698 0.2198 38 1 9.4153 1.4591 0.8885 39 1 8.0603 1.4031 -0.2644 40 1 8.9982 2.5224 3.1154 41 1 7.3190 2.4879 3.7048 42 1 6.2507 0.6212 4.4923 43 1 6.4667 -0.7981 3.3700 44 1 8.3260 -1.6839 4.7051 45 1 7.5244 -0.7857 6.0635 46 1 9.6043 -0.6341 8.2907 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234977276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:59 Heat of formation + Delta-G solvation = -59.999879 kcal Electronic energy + Delta-G solvation = -27044.800964 eV Core-core repulsion = 23164.886243 eV Total energy + Delta-G solvation = -3879.914722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.52468 -40.58812 -39.58055 -38.39474 -36.64477 -36.29775 -34.29470 -31.60920 -30.01790 -29.90091 -28.66792 -27.48730 -27.16592 -26.12356 -25.43153 -23.86262 -21.22313 -20.94865 -19.92248 -18.80597 -18.48242 -18.18787 -17.81497 -17.30746 -17.16046 -16.96496 -16.42455 -16.36978 -15.80910 -15.65439 -15.35689 -15.23407 -14.69501 -14.12451 -13.98055 -13.90654 -13.82262 -13.78856 -13.49375 -13.34340 -13.16538 -13.12934 -13.01368 -12.82528 -12.68450 -12.51164 -12.32457 -12.24142 -11.82834 -11.70857 -11.27221 -11.06766 -10.90020 -10.87797 -10.75820 -9.73240 -9.58978 -8.94788 -7.90056 -5.25874 1.37459 1.44467 1.47069 1.56909 1.64994 1.71215 2.14936 2.48078 2.99203 3.28865 3.38956 3.57524 3.64418 3.83006 4.08030 4.17165 4.19239 4.21111 4.27436 4.31362 4.32575 4.39023 4.43121 4.50406 4.57691 4.62305 4.75720 4.79603 4.80896 4.87045 4.94092 4.94386 4.96176 5.03305 5.18034 5.29659 5.43829 5.49085 5.68016 5.89799 6.00700 6.30118 6.45506 6.87281 7.07499 7.22443 7.58485 8.59511 9.28012 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.020313 B = 0.003015 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.123469 B = 9283.617232 C =10027.929323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.049 3.951 4 C 0.506 3.494 5 O -0.574 6.574 6 N -0.599 5.599 7 C 0.072 3.928 8 C 0.105 3.895 9 C 0.486 3.514 10 O -0.574 6.574 11 N -0.610 5.610 12 C 0.069 3.931 13 C 0.133 3.867 14 C 0.139 3.861 15 H 0.052 0.948 16 C -0.134 4.134 17 C 0.147 3.853 18 N -0.626 5.626 19 C -0.223 4.223 20 H 0.094 0.906 21 C -0.074 4.074 22 N -0.958 5.958 23 Si 0.984 3.016 24 H -0.258 1.258 25 H -0.294 1.294 26 H -0.293 1.293 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.156 0.844 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.018 0.982 45 H 0.038 0.962 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.921 11.602 -23.744 29.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.030 4.030 4 C 0.295 3.705 5 O -0.452 6.452 6 N -0.333 5.333 7 C -0.069 4.069 8 C -0.021 4.021 9 C 0.274 3.726 10 O -0.453 6.453 11 N -0.344 5.344 12 C -0.073 4.073 13 C 0.008 3.992 14 C 0.032 3.968 15 H 0.069 0.931 16 C -0.172 4.172 17 C 0.021 3.979 18 N -0.353 5.353 19 C -0.350 4.350 20 H 0.111 0.889 21 C -0.267 4.267 22 N -0.607 5.607 23 Si 0.812 3.188 24 H -0.182 1.182 25 H -0.222 1.222 26 H -0.220 1.220 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.138 0.862 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.130 0.870 36 H 0.173 0.827 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.036 0.964 45 H 0.057 0.943 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.741 11.004 -23.018 28.978 hybrid contribution 0.708 -0.108 1.361 1.538 sum -13.033 10.897 -21.656 27.525 Atomic orbital electron populations 1.23035 0.78201 1.04141 1.01704 1.87973 1.22289 1.26931 1.95771 1.22401 0.88949 0.86663 1.04943 1.21023 0.90543 0.83774 0.75156 1.90710 1.75656 1.28465 1.50376 1.47523 1.05337 1.07621 1.72783 1.22171 0.99283 0.81378 1.04090 1.21502 0.81135 1.07386 0.92115 1.21901 0.81941 0.75558 0.93215 1.90685 1.55731 1.51058 1.47857 1.47961 1.06820 1.72353 1.07255 1.22139 0.93012 1.03855 0.88262 1.21373 0.99199 0.96278 0.82361 1.22470 0.90895 0.95375 0.88053 0.93053 1.23341 0.95775 0.99576 0.98512 1.22024 0.88584 0.90016 0.97229 1.45915 1.43347 1.33449 1.12564 1.19399 1.10558 1.10760 0.94300 0.88860 1.25753 1.02776 0.99746 0.98396 1.70073 1.45137 1.30718 1.14783 0.84919 0.77874 0.77723 0.78258 1.18172 1.22155 1.22028 0.91444 0.88926 0.92738 0.88573 0.86205 0.88478 0.89945 0.90612 0.87033 0.82650 0.89336 0.90953 0.89104 0.90301 0.92304 0.91789 0.92068 0.96436 0.94306 0.94388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -9.95 10.24 -129.94 -1.33 -11.28 16 3 C 0.05 0.89 4.97 71.24 0.35 1.25 16 4 C 0.51 13.30 7.75 87.66 0.68 13.98 16 5 O -0.57 -21.44 16.08 16.00 0.26 -21.18 16 6 N -0.60 -11.77 2.36 -851.11 -2.01 -13.78 16 7 C 0.07 0.71 10.24 127.77 1.31 2.02 16 8 C 0.10 2.01 4.51 85.63 0.39 2.40 16 9 C 0.49 14.34 7.74 87.66 0.68 15.02 16 10 O -0.57 -22.46 15.93 -3.05 -0.05 -22.51 16 11 N -0.61 -17.16 2.87 -846.74 -2.43 -19.60 16 12 C 0.07 1.18 10.17 127.77 1.30 2.48 16 13 C 0.13 4.96 5.38 86.38 0.47 5.42 16 14 C 0.14 6.14 4.31 41.78 0.18 6.32 16 15 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 16 C -0.13 -6.27 8.02 30.96 0.25 -6.02 16 17 C 0.15 7.99 7.44 83.21 0.62 8.61 16 18 N -0.63 -34.27 3.65 -713.37 -2.61 -36.88 16 19 C -0.22 -12.76 10.55 84.03 0.89 -11.88 16 20 H 0.09 4.95 7.83 -2.91 -0.02 4.93 16 21 C -0.07 -4.39 5.50 84.86 0.47 -3.92 16 22 N -0.96 -60.99 11.47 21.65 0.25 -60.74 16 23 Si 0.98 46.81 29.55 68.60 2.03 48.84 16 24 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 27 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 1.43 7.40 -2.39 -0.02 1.41 16 31 H 0.12 1.09 8.11 -2.39 -0.02 1.07 16 32 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.08 0.66 6.44 -2.39 -0.02 0.65 16 34 H 0.08 0.79 8.07 -2.39 -0.02 0.77 16 35 H 0.11 2.26 6.69 -2.39 -0.02 2.24 16 36 H 0.16 1.40 8.04 -2.39 -0.02 1.38 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.37 8.03 -2.38 -0.02 1.35 16 39 H 0.09 1.15 6.66 -2.39 -0.02 1.14 16 40 H 0.08 2.82 8.11 -2.38 -0.02 2.80 16 41 H 0.06 2.55 7.01 -2.39 -0.02 2.54 16 42 H 0.06 3.20 7.94 -2.39 -0.02 3.18 16 43 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 44 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.04 2.34 7.05 -2.39 -0.02 2.32 16 46 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -91.29 381.89 3.88 -87.41 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.96 Total: 12.45 kcal Atomic # 6 Polarization: 28.44 SS G_CDS: 8.82 Total: 37.26 kcal Atomic # 7 Polarization: -124.19 SS G_CDS: -6.80 Total: -130.99 kcal Atomic # 8 Polarization: -53.86 SS G_CDS: -1.12 Total: -54.98 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -91.29 3.88 -87.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234977276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.412 kcal (2) G-P(sol) polarization free energy of solvation -91.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds