Wall clock time and date at job start Fri Apr 10 2020 18:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00330 * 2 1 4 4 C 1.50698 * 109.47292 * 180.02562 * 3 2 1 5 5 O 1.21283 * 120.00167 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00176 * 179.97438 * 4 3 2 7 7 C 1.46505 * 120.00309 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47185 * 179.97438 * 7 6 4 9 9 C 1.50698 * 109.47052 * 180.02562 * 8 7 6 10 10 O 1.21277 * 119.99873 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00150 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99629 * 355.08659 * 11 9 8 13 13 C 1.46498 * 119.99983 * 175.08933 * 11 9 8 14 14 C 1.52997 * 109.47183 * 94.75172 * 13 11 9 15 15 H 1.09005 * 112.77785 * 316.06141 * 14 13 11 16 16 C 1.53753 * 113.55557 * 86.91753 * 14 13 11 17 17 C 1.53506 * 83.25683 * 140.98990 * 16 14 13 18 18 N 1.47059 * 113.46963 * 185.28555 * 14 13 11 19 19 C 1.36942 * 136.05841 * 38.12554 * 18 14 13 20 20 H 1.08001 * 119.99833 * 354.29180 * 19 18 14 21 21 C 1.38810 * 119.99978 * 174.01186 * 19 18 14 22 22 N 1.31618 * 120.00127 * 0.28226 * 21 19 18 23 23 Si 1.86807 * 119.99844 * 180.27964 * 21 19 18 24 24 H 1.48497 * 109.46896 * 60.00029 * 23 21 19 25 25 H 1.48500 * 109.46888 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46890 * 299.99966 * 23 21 19 27 27 H 1.08999 * 109.46709 * 59.99826 * 1 2 3 28 28 H 1.08996 * 109.47223 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47031 * 300.00492 * 1 2 3 30 30 H 1.08998 * 109.47177 * 59.99519 * 3 2 1 31 31 H 1.09003 * 109.46901 * 299.99611 * 3 2 1 32 32 H 0.97001 * 120.00300 * 359.97438 * 6 4 3 33 33 H 1.08990 * 109.46957 * 59.99695 * 7 6 4 34 34 H 1.09003 * 109.46835 * 299.99841 * 7 6 4 35 35 H 1.09003 * 109.47603 * 59.99898 * 8 7 6 36 36 H 1.09002 * 109.47090 * 300.00247 * 8 7 6 37 37 H 1.08995 * 109.46955 * 269.99862 * 12 11 9 38 38 H 1.08992 * 109.47141 * 30.00241 * 12 11 9 39 39 H 1.09001 * 109.46566 * 150.00245 * 12 11 9 40 40 H 1.08997 * 109.47208 * 334.74412 * 13 11 9 41 41 H 1.09008 * 109.46756 * 214.74735 * 13 11 9 42 42 H 1.09000 * 114.39056 * 27.43071 * 16 14 13 43 43 H 1.08992 * 114.27212 * 254.54353 * 16 14 13 44 44 H 1.09000 * 113.46851 * 218.98853 * 17 16 14 45 45 H 1.08994 * 113.51920 * 88.55326 * 17 16 14 46 46 H 0.96999 * 120.00046 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 8 4.0341 0.0915 -0.0006 6 7 4.2765 2.2967 -0.0013 7 6 5.7370 2.1810 -0.0013 8 6 6.3593 3.5787 -0.0027 9 6 7.8616 3.4596 -0.0034 10 8 8.3831 2.3647 -0.0024 11 7 8.6256 4.5700 -0.0042 12 6 7.9993 5.8899 -0.1130 13 6 10.0822 4.4569 0.1038 14 6 10.6996 4.4663 -1.2961 15 1 10.1580 3.8348 -2.0004 16 6 10.9832 5.8788 -1.8331 17 6 12.2538 5.2176 -2.3852 18 7 12.1516 4.2332 -1.2974 19 6 13.0240 3.4428 -0.5977 20 1 12.6700 2.8542 0.2357 21 6 14.3623 3.3939 -0.9632 22 7 14.7938 4.1113 -1.9787 23 14 15.5508 2.3097 -0.0135 24 1 15.1045 0.8958 -0.0955 25 1 16.9101 2.4350 -0.5981 26 1 15.5826 2.7372 1.4083 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.8595 3.1725 -0.0017 33 1 6.0585 1.6396 -0.8909 34 1 6.0587 1.6405 0.8890 35 1 6.0378 4.1205 0.8868 36 1 6.0376 4.1187 -0.8932 37 1 7.9161 6.1670 -1.1638 38 1 7.0059 5.8587 0.3344 39 1 8.6102 6.6260 0.4096 40 1 10.3380 3.5248 0.6075 41 1 10.4704 5.2984 0.6777 42 1 11.1675 6.6254 -1.0606 43 1 10.2853 6.2152 -2.5997 44 1 13.1381 5.8511 -2.3157 45 1 12.1229 4.7841 -3.3766 46 1 15.7288 4.0768 -2.2344 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235006045.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:02 Heat of formation + Delta-G solvation = -49.336390 kcal Electronic energy + Delta-G solvation = -25768.985660 eV Core-core repulsion = 21889.533342 eV Total energy + Delta-G solvation = -3879.452318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.23215 -39.71945 -38.06498 -37.78601 -35.45470 -35.17603 -32.18121 -31.66026 -29.36136 -28.29196 -27.87218 -26.59547 -26.08108 -23.83342 -23.39207 -21.88014 -21.07811 -19.28852 -18.95870 -17.66342 -17.36566 -16.87023 -16.79460 -16.66288 -16.03062 -15.88404 -15.41192 -15.07391 -14.70422 -14.67020 -14.19741 -13.92959 -13.44374 -13.37114 -13.18799 -12.96941 -12.69963 -12.59338 -12.55724 -12.06110 -11.91347 -11.77359 -11.68945 -11.45271 -11.08171 -10.86754 -10.72415 -10.41957 -10.26836 -10.12757 -9.83672 -9.82439 -9.70263 -9.39985 -9.36481 -8.74746 -8.32408 -6.82878 -5.72277 -3.03995 2.32882 2.39337 2.71332 3.14839 3.44871 3.49008 3.50878 3.67359 4.29476 4.51222 4.52363 4.60228 4.62842 4.66822 4.78080 4.85415 4.90395 5.00122 5.16473 5.22513 5.23863 5.36745 5.49573 5.52909 5.64662 5.66016 5.80346 5.82511 5.98233 6.06336 6.18517 6.30394 6.44819 6.51064 6.53661 6.69640 6.88448 7.13609 7.26874 7.42933 7.52305 7.60740 7.92851 8.03257 8.29626 9.09695 9.75906 10.69617 11.45845 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.022011 B = 0.002230 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.794450 B =12553.667544 C =13389.845352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.510 3.490 5 O -0.512 6.512 6 N -0.731 5.731 7 C 0.134 3.866 8 C -0.150 4.150 9 C 0.511 3.489 10 O -0.528 6.528 11 N -0.610 5.610 12 C 0.079 3.921 13 C 0.115 3.885 14 C 0.133 3.867 15 H 0.042 0.958 16 C -0.167 4.167 17 C 0.157 3.843 18 N -0.600 5.600 19 C -0.216 4.216 20 H 0.080 0.920 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.284 1.284 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.399 0.601 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.024 0.976 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.063 6.486 4.020 30.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.036 4.036 4 C 0.294 3.706 5 O -0.385 6.385 6 N -0.386 5.386 7 C 0.011 3.989 8 C -0.191 4.191 9 C 0.297 3.703 10 O -0.404 6.404 11 N -0.344 5.344 12 C -0.064 4.064 13 C -0.008 4.008 14 C 0.025 3.975 15 H 0.060 0.940 16 C -0.206 4.206 17 C 0.032 3.968 18 N -0.326 5.326 19 C -0.343 4.343 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.741 3.259 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.211 1.211 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.233 0.767 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.042 0.958 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -27.913 4.747 4.108 28.611 hybrid contribution 0.247 0.213 0.262 0.418 sum -27.666 4.960 4.370 28.445 Atomic orbital electron populations 1.22852 0.80256 1.03466 1.00111 1.88040 1.19867 1.25110 1.95409 1.22231 0.91577 0.87150 1.02625 1.20243 0.88649 0.84627 0.77032 1.90789 1.74513 1.26421 1.46812 1.45856 1.07302 1.08648 1.76803 1.21084 0.77442 0.95882 1.04519 1.21822 0.93753 0.98752 1.04728 1.20243 0.88618 0.84425 0.77011 1.90793 1.74734 1.26160 1.48727 1.47876 1.07861 1.05954 1.72734 1.21797 0.98122 0.84537 1.01952 1.21907 0.76290 1.03295 0.99312 1.22453 0.87866 0.93526 0.93647 0.94037 1.23788 1.00111 0.96377 1.00300 1.21929 0.94517 0.89660 0.90736 1.45727 0.99660 1.48057 1.39152 1.18896 0.88003 1.19304 1.08111 0.90182 1.24811 0.97126 1.00314 0.98174 1.69833 1.14857 1.43364 1.28735 0.86216 0.80205 0.80454 0.79022 1.21087 1.21605 1.21064 0.93743 0.88997 0.93773 0.90182 0.90159 0.76711 0.90193 0.90275 0.88342 0.88315 0.92402 0.91582 0.90826 0.89775 0.90487 0.90605 0.92911 0.91626 0.95795 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.37 -3.66 10.24 -55.14 -0.56 -4.22 16 3 C 0.04 0.30 6.42 36.00 0.23 0.54 16 4 C 0.51 5.47 7.91 -10.99 -0.09 5.38 16 5 O -0.51 -8.51 16.50 -14.35 -0.24 -8.74 16 6 N -0.73 -5.68 5.56 -60.30 -0.33 -6.02 16 7 C 0.13 1.45 4.96 -4.04 -0.02 1.43 16 8 C -0.15 -1.27 4.27 -27.89 -0.12 -1.39 16 9 C 0.51 7.28 7.66 -10.98 -0.08 7.20 16 10 O -0.53 -10.39 15.54 5.56 0.09 -10.30 16 11 N -0.61 -8.26 2.87 -181.57 -0.52 -8.78 16 12 C 0.08 0.67 10.30 59.85 0.62 1.29 16 13 C 0.11 2.05 5.42 -4.04 -0.02 2.03 16 14 C 0.13 2.77 4.32 -72.26 -0.31 2.46 16 15 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 16 C -0.17 -3.05 8.03 -26.08 -0.21 -3.26 16 17 C 0.16 3.76 7.27 -8.50 -0.06 3.70 16 18 N -0.60 -15.70 3.64 -176.83 -0.64 -16.34 16 19 C -0.22 -6.22 10.55 -15.06 -0.16 -6.37 16 20 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 22 N -0.92 -27.98 11.65 55.49 0.65 -27.34 16 23 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 24 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.40 1.38 8.47 -40.82 -0.35 1.03 16 33 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 34 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 35 H 0.10 0.56 7.57 -51.93 -0.39 0.16 16 36 H 0.10 0.60 8.05 -51.93 -0.42 0.18 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.35 6.44 -51.93 -0.33 0.01 16 39 H 0.07 0.59 7.94 -51.93 -0.41 0.18 16 40 H 0.08 1.77 7.35 -51.93 -0.38 1.39 16 41 H 0.08 1.29 7.71 -51.92 -0.40 0.89 16 42 H 0.08 1.30 7.96 -51.93 -0.41 0.89 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 1.71 7.38 -51.93 -0.38 1.32 16 45 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 384.97 15.07 5.80 5.80 Total: -1.00 -39.94 384.97 -7.68 -47.61 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -7.67 Total: -3.49 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 0.79 Total: 13.95 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.85 Total: -58.48 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.71 Total: -23.27 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -39.94 -7.68 -47.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235006045.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.723 kcal (2) G-P(sol) polarization free energy of solvation -39.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds