Wall clock time and date at job start Fri Apr 10 2020 18:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00330 * 2 1 4 4 C 1.50698 * 109.47292 * 180.02562 * 3 2 1 5 5 O 1.21283 * 120.00167 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00176 * 179.97438 * 4 3 2 7 7 C 1.46505 * 120.00309 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47185 * 179.97438 * 7 6 4 9 9 C 1.50698 * 109.47052 * 180.02562 * 8 7 6 10 10 O 1.21277 * 119.99873 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00150 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99629 * 355.08659 * 11 9 8 13 13 C 1.46498 * 119.99983 * 175.08933 * 11 9 8 14 14 C 1.52997 * 109.47183 * 94.75172 * 13 11 9 15 15 H 1.09005 * 112.77785 * 316.06141 * 14 13 11 16 16 C 1.53753 * 113.55557 * 86.91753 * 14 13 11 17 17 C 1.53506 * 83.25683 * 140.98990 * 16 14 13 18 18 N 1.47059 * 113.46963 * 185.28555 * 14 13 11 19 19 C 1.36942 * 136.05841 * 38.12554 * 18 14 13 20 20 H 1.08001 * 119.99833 * 354.29180 * 19 18 14 21 21 C 1.38810 * 119.99978 * 174.01186 * 19 18 14 22 22 N 1.31618 * 120.00127 * 0.28226 * 21 19 18 23 23 Si 1.86807 * 119.99844 * 180.27964 * 21 19 18 24 24 H 1.48497 * 109.46896 * 60.00029 * 23 21 19 25 25 H 1.48500 * 109.46888 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46890 * 299.99966 * 23 21 19 27 27 H 1.08999 * 109.46709 * 59.99826 * 1 2 3 28 28 H 1.08996 * 109.47223 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47031 * 300.00492 * 1 2 3 30 30 H 1.08998 * 109.47177 * 59.99519 * 3 2 1 31 31 H 1.09003 * 109.46901 * 299.99611 * 3 2 1 32 32 H 0.97001 * 120.00300 * 359.97438 * 6 4 3 33 33 H 1.08990 * 109.46957 * 59.99695 * 7 6 4 34 34 H 1.09003 * 109.46835 * 299.99841 * 7 6 4 35 35 H 1.09003 * 109.47603 * 59.99898 * 8 7 6 36 36 H 1.09002 * 109.47090 * 300.00247 * 8 7 6 37 37 H 1.08995 * 109.46955 * 269.99862 * 12 11 9 38 38 H 1.08992 * 109.47141 * 30.00241 * 12 11 9 39 39 H 1.09001 * 109.46566 * 150.00245 * 12 11 9 40 40 H 1.08997 * 109.47208 * 334.74412 * 13 11 9 41 41 H 1.09008 * 109.46756 * 214.74735 * 13 11 9 42 42 H 1.09000 * 114.39056 * 27.43071 * 16 14 13 43 43 H 1.08992 * 114.27212 * 254.54353 * 16 14 13 44 44 H 1.09000 * 113.46851 * 218.98853 * 17 16 14 45 45 H 1.08994 * 113.51920 * 88.55326 * 17 16 14 46 46 H 0.96999 * 120.00046 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 8 4.0341 0.0915 -0.0006 6 7 4.2765 2.2967 -0.0013 7 6 5.7370 2.1810 -0.0013 8 6 6.3593 3.5787 -0.0027 9 6 7.8616 3.4596 -0.0034 10 8 8.3831 2.3647 -0.0024 11 7 8.6256 4.5700 -0.0042 12 6 7.9993 5.8899 -0.1130 13 6 10.0822 4.4569 0.1038 14 6 10.6996 4.4663 -1.2961 15 1 10.1580 3.8348 -2.0004 16 6 10.9832 5.8788 -1.8331 17 6 12.2538 5.2176 -2.3852 18 7 12.1516 4.2332 -1.2974 19 6 13.0240 3.4428 -0.5977 20 1 12.6700 2.8542 0.2357 21 6 14.3623 3.3939 -0.9632 22 7 14.7938 4.1113 -1.9787 23 14 15.5508 2.3097 -0.0135 24 1 15.1045 0.8958 -0.0955 25 1 16.9101 2.4350 -0.5981 26 1 15.5826 2.7372 1.4083 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.8595 3.1725 -0.0017 33 1 6.0585 1.6396 -0.8909 34 1 6.0587 1.6405 0.8890 35 1 6.0378 4.1205 0.8868 36 1 6.0376 4.1187 -0.8932 37 1 7.9161 6.1670 -1.1638 38 1 7.0059 5.8587 0.3344 39 1 8.6102 6.6260 0.4096 40 1 10.3380 3.5248 0.6075 41 1 10.4704 5.2984 0.6777 42 1 11.1675 6.6254 -1.0606 43 1 10.2853 6.2152 -2.5997 44 1 13.1381 5.8511 -2.3157 45 1 12.1229 4.7841 -3.3766 46 1 15.7288 4.0768 -2.2344 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235006045.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:02 Heat of formation + Delta-G solvation = -81.494568 kcal Electronic energy + Delta-G solvation = -25770.380143 eV Core-core repulsion = 21889.533342 eV Total energy + Delta-G solvation = -3880.846801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.24830 -40.72337 -39.69851 -38.43342 -36.52535 -36.23388 -34.30005 -32.57341 -30.25091 -29.91109 -29.21775 -27.36427 -26.74326 -25.44267 -24.87561 -23.25918 -21.89212 -21.08227 -20.05514 -18.74506 -18.38817 -18.21701 -17.51749 -17.41531 -17.25895 -16.95275 -16.66067 -16.26186 -15.95024 -15.79458 -15.40277 -15.33580 -14.68480 -14.57525 -14.21915 -14.00510 -13.80740 -13.65818 -13.43279 -13.26223 -13.13446 -12.99377 -12.75214 -12.66370 -12.46656 -12.41168 -12.33288 -12.26614 -11.84092 -11.62582 -11.21764 -11.04777 -10.87964 -10.78164 -10.74140 -10.21259 -9.58293 -8.92440 -7.94517 -5.26780 1.40317 1.44672 1.50423 1.54062 1.64081 1.66884 2.17616 2.46682 3.14685 3.26349 3.48241 3.55282 3.76730 3.81215 3.90301 4.04593 4.22780 4.23649 4.31920 4.33532 4.40521 4.52147 4.54419 4.57017 4.60680 4.74266 4.80375 4.89866 4.90039 4.92835 4.96816 4.99994 5.07693 5.11699 5.22607 5.30995 5.48222 5.53828 5.75316 5.92965 6.07221 6.47009 6.56821 6.89923 7.21030 7.25407 7.57697 8.59425 9.23405 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.022011 B = 0.002230 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.794450 B =12553.667544 C =13389.845352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.049 3.951 4 C 0.501 3.499 5 O -0.585 6.585 6 N -0.705 5.705 7 C 0.139 3.861 8 C -0.127 4.127 9 C 0.499 3.501 10 O -0.599 6.599 11 N -0.607 5.607 12 C 0.067 3.933 13 C 0.129 3.871 14 C 0.132 3.868 15 H 0.021 0.979 16 C -0.122 4.122 17 C 0.146 3.854 18 N -0.633 5.633 19 C -0.226 4.226 20 H 0.074 0.926 21 C -0.066 4.066 22 N -0.951 5.951 23 Si 0.975 3.025 24 H -0.286 1.286 25 H -0.289 1.289 26 H -0.271 1.271 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.426 0.574 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.040 0.960 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.038 0.962 45 H 0.007 0.993 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.551 9.805 4.816 34.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.030 4.030 4 C 0.288 3.712 5 O -0.464 6.464 6 N -0.361 5.361 7 C 0.014 3.986 8 C -0.167 4.167 9 C 0.288 3.712 10 O -0.480 6.480 11 N -0.339 5.339 12 C -0.074 4.074 13 C 0.004 3.996 14 C 0.025 3.975 15 H 0.038 0.962 16 C -0.160 4.160 17 C 0.020 3.980 18 N -0.359 5.359 19 C -0.354 4.354 20 H 0.092 0.908 21 C -0.259 4.259 22 N -0.600 5.600 23 Si 0.803 3.197 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.197 1.197 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.265 0.735 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.162 0.838 36 H 0.158 0.842 37 H 0.090 0.910 38 H 0.128 0.872 39 H 0.101 0.899 40 H 0.058 0.942 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.056 0.944 45 H 0.025 0.975 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -31.493 8.188 4.912 32.909 hybrid contribution 1.250 -0.804 -0.019 1.486 sum -30.244 7.385 4.894 31.514 Atomic orbital electron populations 1.23028 0.78141 1.04021 1.01858 1.87980 1.22300 1.27248 1.95851 1.22408 0.88011 0.86688 1.05940 1.21202 0.90712 0.83957 0.75351 1.90761 1.76069 1.29279 1.50324 1.45557 1.05770 1.09559 1.75191 1.20774 0.79407 0.97111 1.01342 1.21772 0.88604 0.97618 1.08701 1.21333 0.91089 0.83419 0.75340 1.90776 1.76391 1.28975 1.51809 1.47947 1.05844 1.08214 1.71881 1.22240 1.00061 0.81485 1.03582 1.21436 0.79546 1.01697 0.96886 1.22549 0.85056 0.94742 0.95126 0.96172 1.23530 0.96798 0.94812 1.00812 1.21999 0.96472 0.89656 0.89860 1.46147 1.02201 1.48072 1.39468 1.19169 0.88942 1.19061 1.08216 0.90791 1.25624 0.98795 1.01997 0.99523 1.70004 1.14761 1.44902 1.30345 0.85208 0.77809 0.78393 0.78302 1.21234 1.21483 1.19696 0.91963 0.89272 0.91909 0.86514 0.86619 0.73471 0.93876 0.93536 0.83830 0.84236 0.90987 0.87247 0.89917 0.94166 0.88907 0.88525 0.88701 0.94391 0.97519 0.94201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -7.83 10.24 -129.94 -1.33 -9.16 16 3 C 0.05 0.53 6.42 71.24 0.46 0.99 16 4 C 0.50 10.32 7.91 87.66 0.69 11.02 16 5 O -0.59 -20.53 16.50 16.00 0.26 -20.27 16 6 N -0.70 -9.29 5.56 -463.07 -2.57 -11.87 16 7 C 0.14 2.94 4.96 86.38 0.43 3.37 16 8 C -0.13 -1.70 4.27 29.85 0.13 -1.57 16 9 C 0.50 13.71 7.66 87.66 0.67 14.39 16 10 O -0.60 -24.88 15.54 -3.02 -0.05 -24.93 16 11 N -0.61 -14.98 2.87 -846.76 -2.43 -17.42 16 12 C 0.07 0.76 10.30 127.77 1.32 2.08 16 13 C 0.13 4.56 5.42 86.38 0.47 5.03 16 14 C 0.13 5.50 4.32 41.88 0.18 5.68 16 15 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 16 C -0.12 -4.14 8.03 31.02 0.25 -3.89 16 17 C 0.15 7.08 7.27 83.18 0.60 7.69 16 18 N -0.63 -34.02 3.64 -713.38 -2.60 -36.62 16 19 C -0.23 -13.46 10.55 84.03 0.89 -12.57 16 20 H 0.07 4.36 7.83 -2.91 -0.02 4.34 16 21 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 22 N -0.95 -59.71 11.65 21.65 0.25 -59.46 16 23 Si 0.98 48.44 29.55 68.60 2.03 50.47 16 24 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 27 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 30 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.43 0.85 8.47 -92.71 -0.79 0.07 16 33 H 0.04 1.24 8.10 -2.39 -0.02 1.22 16 34 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 35 H 0.14 0.72 7.57 -2.39 -0.02 0.70 16 36 H 0.14 0.84 8.05 -2.39 -0.02 0.82 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.11 0.34 6.44 -2.39 -0.02 0.32 16 39 H 0.08 0.86 7.94 -2.39 -0.02 0.84 16 40 H 0.04 1.77 7.35 -2.39 -0.02 1.76 16 41 H 0.09 2.95 7.71 -2.38 -0.02 2.94 16 42 H 0.10 2.95 7.96 -2.39 -0.02 2.93 16 43 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.04 2.03 7.38 -2.39 -0.02 2.01 16 45 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -99.50 384.97 1.54 -97.96 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: 0.18 Total: 1.14 kcal Atomic # 6 Polarization: 22.36 SS G_CDS: 7.80 Total: 30.16 kcal Atomic # 7 Polarization: -118.01 SS G_CDS: -7.35 Total: -125.36 kcal Atomic # 8 Polarization: -53.25 SS G_CDS: -1.11 Total: -54.36 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 2.03 Total: 50.47 kcal Total: -99.50 1.54 -97.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235006045.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.463 kcal (2) G-P(sol) polarization free energy of solvation -99.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds