Wall clock time and date at job start Fri Apr 10 2020 18:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99789 * 2 1 4 4 H 1.48497 * 109.47235 * 270.00644 * 3 2 1 5 5 H 1.48504 * 109.47138 * 30.00664 * 3 2 1 6 6 H 1.48498 * 109.46975 * 150.00332 * 3 2 1 7 7 C 1.37874 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00080 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00102 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.47356 * 175.03456 * 9 7 2 11 11 C 1.46953 * 111.00080 * 64.90042 * 10 9 7 12 12 C 1.53046 * 109.36175 * 176.81194 * 11 10 9 13 13 N 1.46955 * 109.36701 * 58.40854 * 12 11 10 14 14 C 1.46900 * 111.00075 * 176.80880 * 13 12 11 15 15 C 1.53006 * 109.46880 * 176.09026 * 14 13 12 16 16 H 1.09003 * 109.47280 * 299.52173 * 15 14 13 17 17 O 1.42895 * 109.47121 * 59.51935 * 15 14 13 18 18 C 1.52991 * 109.47212 * 179.52309 * 15 14 13 19 19 N 1.46898 * 109.47484 * 180.02562 * 18 15 14 20 20 C 1.47016 * 110.99658 * 293.63436 * 19 18 15 21 21 C 1.53104 * 109.25425 * 177.60784 * 20 19 18 22 22 O 1.43009 * 109.26227 * 56.84395 * 21 20 19 23 23 C 1.43013 * 113.74163 * 301.33295 * 22 21 20 24 24 C 1.47017 * 111.00429 * 169.99704 * 19 18 15 25 25 C 1.46963 * 110.87546 * 300.67807 * 13 12 11 26 26 C 1.46961 * 110.99625 * 301.10252 * 10 9 7 27 27 H 0.96996 * 119.99881 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47338 * 55.02617 * 9 7 2 29 29 H 1.09007 * 109.46465 * 295.03137 * 9 7 2 30 30 H 1.09006 * 109.48678 * 56.84839 * 11 10 9 31 31 H 1.08994 * 109.49583 * 296.78271 * 11 10 9 32 32 H 1.09002 * 109.48811 * 178.37065 * 12 11 10 33 33 H 1.09000 * 109.49410 * 298.43069 * 12 11 10 34 34 H 1.08993 * 109.47285 * 296.08963 * 14 13 12 35 35 H 1.09001 * 109.46842 * 56.09627 * 14 13 12 36 36 H 0.96706 * 113.99840 * 59.99789 * 17 15 14 37 37 H 1.09003 * 109.46888 * 300.00104 * 18 15 14 38 38 H 1.08999 * 109.47379 * 59.99661 * 18 15 14 39 39 H 1.08994 * 109.50461 * 297.53258 * 20 19 18 40 40 H 1.09000 * 109.50703 * 57.67290 * 20 19 18 41 41 H 1.09002 * 109.50171 * 296.90738 * 21 20 19 42 42 H 1.08993 * 109.54055 * 176.80613 * 21 20 19 43 43 H 1.09001 * 109.50671 * 298.73043 * 23 22 21 44 44 H 1.09003 * 109.54666 * 178.62313 * 23 22 21 45 45 H 1.09003 * 109.50355 * 302.32862 * 24 19 18 46 46 H 1.09006 * 109.50010 * 62.41121 * 24 19 18 47 47 H 1.08999 * 109.48544 * 299.34874 * 25 13 12 48 48 H 1.08997 * 109.48643 * 179.28787 * 25 13 12 49 49 H 1.08995 * 109.49135 * 303.16076 * 26 10 9 50 50 H 1.09004 * 109.48569 * 63.22073 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0014 -2.5738 0.1183 11 6 3.6278 -3.3690 -1.0597 12 6 4.2229 -4.7734 -0.9334 13 7 3.7307 -5.4020 0.3004 14 6 4.2205 -6.7818 0.4197 15 6 3.7694 -7.3690 1.7587 16 1 4.1804 -6.7733 2.5737 17 8 2.3423 -7.3525 1.8294 18 6 4.2693 -8.8100 1.8779 19 7 3.8357 -9.3741 3.1632 20 6 4.4912 -8.6893 4.2869 21 6 3.9674 -9.2665 5.6047 22 8 4.1938 -10.6784 5.6245 23 6 3.5691 -11.3769 4.5442 24 6 4.0890 -10.8213 3.2158 25 6 4.1042 -4.6067 1.4784 26 6 3.5092 -3.2024 1.3521 27 1 -0.4850 0.8400 0.0004 28 1 3.8753 -0.6052 0.8409 29 1 3.8745 -0.7589 -0.9324 30 1 4.0142 -2.8899 -1.9593 31 1 2.5419 -3.4385 -1.1222 32 1 3.9230 -5.3740 -1.7921 33 1 5.3103 -4.7059 -0.8984 34 1 3.8164 -7.3826 -0.3950 35 1 5.3093 -6.7865 0.3694 36 1 1.9080 -7.8638 1.1328 37 1 3.8583 -9.4058 1.0629 38 1 5.3579 -8.8226 1.8240 39 1 5.5690 -8.8404 4.2264 40 1 4.2694 -7.6231 4.2428 41 1 2.8989 -9.0680 5.6896 42 1 4.4913 -8.8020 6.4400 43 1 2.4891 -11.2399 4.5984 44 1 3.8051 -12.4390 4.6118 45 1 3.5735 -11.3112 2.3896 46 1 5.1603 -11.0063 3.1373 47 1 5.1902 -4.5373 1.5408 48 1 3.7178 -5.0859 2.3779 49 1 3.8090 -2.6018 2.2108 50 1 2.4218 -3.2699 1.3170 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251015152.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:15 Heat of formation + Delta-G solvation = -64.486177 kcal Electronic energy + Delta-G solvation = -27406.259730 eV Core-core repulsion = 23661.983562 eV Total energy + Delta-G solvation = -3744.276168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.04087 -39.03482 -37.48783 -35.54500 -34.69968 -32.32779 -31.55040 -30.73071 -30.30511 -28.72879 -27.00811 -25.21150 -24.39618 -23.30063 -23.11408 -21.50532 -20.84509 -20.66562 -19.04206 -17.20285 -16.80780 -16.55439 -16.15472 -16.04335 -15.49570 -15.38183 -15.36685 -14.88234 -14.46564 -14.29091 -14.20075 -14.13113 -13.89247 -13.71392 -12.97533 -12.72447 -12.59039 -12.32751 -12.25862 -11.99422 -11.81223 -11.71157 -11.66212 -11.25374 -11.01528 -10.88602 -10.86790 -10.61134 -10.46919 -10.21653 -10.17105 -9.99288 -9.85772 -9.69373 -9.43903 -8.68320 -8.56740 -8.03448 -7.17219 -6.06657 -4.06414 3.28971 3.29177 3.36790 3.40205 3.55697 4.03523 4.40368 4.41985 4.56736 4.57915 4.62578 4.80920 4.85188 4.85368 4.96392 5.03489 5.04471 5.19009 5.21295 5.26337 5.29215 5.32262 5.40411 5.43353 5.52913 5.55725 5.61263 5.64666 5.81059 5.86597 5.91844 6.00876 6.13772 6.29716 6.56053 6.58278 6.60324 6.80432 6.81519 6.91152 6.95707 7.08343 7.29679 7.36529 7.59326 7.81526 8.08144 8.12210 8.48827 8.97754 9.55798 11.06271 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.024707 B = 0.002568 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.993985 B =10901.844308 C =11336.162028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.549 4.549 8 H 0.078 0.922 9 C 0.152 3.848 10 N -0.538 5.538 11 C 0.062 3.938 12 C 0.060 3.940 13 N -0.523 5.523 14 C 0.024 3.976 15 C 0.113 3.887 16 H 0.098 0.902 17 O -0.531 6.531 18 C 0.023 3.977 19 N -0.524 5.524 20 C 0.015 3.985 21 C 0.064 3.936 22 O -0.388 6.388 23 C 0.064 3.936 24 C 0.017 3.983 25 C 0.058 3.942 26 C 0.064 3.936 27 H 0.263 0.737 28 H 0.030 0.970 29 H 0.023 0.977 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.034 0.966 36 H 0.370 0.630 37 H 0.080 0.920 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.061 0.939 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.040 0.960 47 H 0.028 0.972 48 H 0.076 0.924 49 H 0.066 0.934 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.618 -22.140 5.311 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.587 4.587 8 H 0.096 0.904 9 C 0.026 3.974 10 N -0.262 5.262 11 C -0.067 4.067 12 C -0.068 4.068 13 N -0.248 5.248 14 C -0.105 4.105 15 C 0.052 3.948 16 H 0.115 0.885 17 O -0.334 6.334 18 C -0.105 4.105 19 N -0.249 5.249 20 C -0.113 4.113 21 C -0.013 4.013 22 O -0.307 6.307 23 C -0.013 4.013 24 C -0.111 4.111 25 C -0.070 4.070 26 C -0.064 4.064 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.217 0.783 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.079 0.921 44 H 0.114 0.886 45 H 0.103 0.897 46 H 0.058 0.942 47 H 0.046 0.954 48 H 0.094 0.906 49 H 0.085 0.915 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.191 -21.652 6.021 24.676 hybrid contribution 1.047 0.629 -0.989 1.572 sum 11.239 -21.022 5.032 24.363 Atomic orbital electron populations 1.69936 1.06335 1.26895 1.50540 1.24978 0.94683 0.99140 0.94299 0.86818 0.80423 0.83705 0.78560 1.20279 1.21338 1.18847 1.21714 0.90620 0.94789 1.51617 0.90438 1.20184 0.94754 0.85777 0.96719 1.62631 1.58333 1.03752 1.01469 1.21948 0.99830 0.90942 0.93980 1.22215 0.97039 0.95895 0.91620 1.62078 1.59291 1.00486 1.02928 1.22769 0.97685 0.91798 0.98230 1.21928 0.83090 0.92861 0.96881 0.88461 1.86650 1.16433 1.75217 1.55100 1.22873 0.98461 0.97418 0.91777 1.62107 1.58073 1.02538 1.02159 1.22848 0.96586 1.00213 0.91621 1.22673 1.01232 0.80890 0.96509 1.87972 1.75034 1.19512 1.48163 1.22645 0.97461 0.96141 0.85056 1.22803 0.99710 0.89117 0.99468 1.22293 0.97335 0.94535 0.92875 1.21927 0.99582 0.91750 0.93183 0.92737 0.95204 0.95941 0.91486 0.92777 0.91331 0.95041 0.90695 0.94774 0.78340 0.90195 0.94081 0.94179 0.89083 0.91857 0.88392 0.92063 0.88585 0.89658 0.94201 0.95395 0.90612 0.91538 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.55 27.57 -169.99 -4.69 16.86 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.26 -6.24 6.40 56.52 0.36 -5.87 16 7 C -0.55 -15.43 8.21 -34.44 -0.28 -15.71 16 8 H 0.08 2.40 6.07 -52.49 -0.32 2.08 16 9 C 0.15 3.71 4.24 -4.97 -0.02 3.69 16 10 N -0.54 -11.40 4.92 -235.91 -1.16 -12.56 16 11 C 0.06 1.20 5.32 -3.77 -0.02 1.18 16 12 C 0.06 0.94 5.62 -3.77 -0.02 0.92 16 13 N -0.52 -7.94 4.67 -234.47 -1.10 -9.04 16 14 C 0.02 0.28 4.80 -3.82 -0.02 0.26 16 15 C 0.11 1.19 2.29 -26.73 -0.06 1.13 16 16 H 0.10 1.13 4.65 -51.93 -0.24 0.88 16 17 O -0.53 -6.70 13.06 -35.23 -0.46 -7.16 16 18 C 0.02 0.20 4.62 -3.83 -0.02 0.18 16 19 N -0.52 -4.81 4.59 -234.31 -1.08 -5.89 16 20 C 0.02 0.14 5.44 -3.71 -0.02 0.12 16 21 C 0.06 0.57 7.01 37.21 0.26 0.83 16 22 O -0.39 -3.91 10.83 -35.23 -0.38 -4.29 16 23 C 0.06 0.50 7.01 37.21 0.26 0.76 16 24 C 0.02 0.13 5.64 -3.71 -0.02 0.11 16 25 C 0.06 0.93 5.12 -3.77 -0.02 0.91 16 26 C 0.06 1.29 5.24 -3.77 -0.02 1.27 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.03 0.74 6.85 -51.93 -0.36 0.38 16 29 H 0.02 0.55 7.79 -51.92 -0.40 0.14 16 30 H 0.07 1.25 8.12 -51.93 -0.42 0.83 16 31 H 0.05 1.22 6.79 -51.93 -0.35 0.86 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.37 3.66 9.05 45.56 0.41 4.08 16 37 H 0.08 0.59 8.04 -51.93 -0.42 0.17 16 38 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 39 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.86 6.38 -51.93 -0.33 0.53 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.55 8.09 -51.93 -0.42 0.13 16 46 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.08 1.15 6.02 -51.93 -0.31 0.84 16 49 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 50 H 0.06 1.37 6.61 -51.93 -0.34 1.02 16 LS Contribution 374.80 15.07 5.65 5.65 Total: -1.00 -32.42 374.80 -10.71 -43.14 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.18 Total: 2.57 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -0.10 Total: -2.39 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -2.56 Total: -54.38 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.84 Total: -11.45 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.69 Total: 16.86 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.42 -10.71 -43.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251015152.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.349 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds