Wall clock time and date at job start Fri Apr 10 2020 18:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99789 * 2 1 4 4 H 1.48497 * 109.47235 * 270.00644 * 3 2 1 5 5 H 1.48504 * 109.47138 * 30.00664 * 3 2 1 6 6 H 1.48498 * 109.46975 * 150.00332 * 3 2 1 7 7 C 1.37874 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00080 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00102 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.47356 * 175.03456 * 9 7 2 11 11 C 1.46953 * 111.00080 * 64.90042 * 10 9 7 12 12 C 1.53046 * 109.36175 * 176.81194 * 11 10 9 13 13 N 1.46955 * 109.36701 * 58.40854 * 12 11 10 14 14 C 1.46900 * 111.00075 * 176.80880 * 13 12 11 15 15 C 1.53006 * 109.46880 * 176.09026 * 14 13 12 16 16 H 1.09003 * 109.47280 * 299.52173 * 15 14 13 17 17 O 1.42895 * 109.47121 * 59.51935 * 15 14 13 18 18 C 1.52991 * 109.47212 * 179.52309 * 15 14 13 19 19 N 1.46898 * 109.47484 * 180.02562 * 18 15 14 20 20 C 1.47016 * 110.99658 * 293.63436 * 19 18 15 21 21 C 1.53104 * 109.25425 * 177.60784 * 20 19 18 22 22 O 1.43009 * 109.26227 * 56.84395 * 21 20 19 23 23 C 1.43013 * 113.74163 * 301.33295 * 22 21 20 24 24 C 1.47017 * 111.00429 * 169.99704 * 19 18 15 25 25 C 1.46963 * 110.87546 * 300.67807 * 13 12 11 26 26 C 1.46961 * 110.99625 * 301.10252 * 10 9 7 27 27 H 0.96996 * 119.99881 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47338 * 55.02617 * 9 7 2 29 29 H 1.09007 * 109.46465 * 295.03137 * 9 7 2 30 30 H 1.09006 * 109.48678 * 56.84839 * 11 10 9 31 31 H 1.08994 * 109.49583 * 296.78271 * 11 10 9 32 32 H 1.09002 * 109.48811 * 178.37065 * 12 11 10 33 33 H 1.09000 * 109.49410 * 298.43069 * 12 11 10 34 34 H 1.08993 * 109.47285 * 296.08963 * 14 13 12 35 35 H 1.09001 * 109.46842 * 56.09627 * 14 13 12 36 36 H 0.96706 * 113.99840 * 59.99789 * 17 15 14 37 37 H 1.09003 * 109.46888 * 300.00104 * 18 15 14 38 38 H 1.08999 * 109.47379 * 59.99661 * 18 15 14 39 39 H 1.08994 * 109.50461 * 297.53258 * 20 19 18 40 40 H 1.09000 * 109.50703 * 57.67290 * 20 19 18 41 41 H 1.09002 * 109.50171 * 296.90738 * 21 20 19 42 42 H 1.08993 * 109.54055 * 176.80613 * 21 20 19 43 43 H 1.09001 * 109.50671 * 298.73043 * 23 22 21 44 44 H 1.09003 * 109.54666 * 178.62313 * 23 22 21 45 45 H 1.09003 * 109.50355 * 302.32862 * 24 19 18 46 46 H 1.09006 * 109.50010 * 62.41121 * 24 19 18 47 47 H 1.08999 * 109.48544 * 299.34874 * 25 13 12 48 48 H 1.08997 * 109.48643 * 179.28787 * 25 13 12 49 49 H 1.08995 * 109.49135 * 303.16076 * 26 10 9 50 50 H 1.09004 * 109.48569 * 63.22073 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0014 -2.5738 0.1183 11 6 3.6278 -3.3690 -1.0597 12 6 4.2229 -4.7734 -0.9334 13 7 3.7307 -5.4020 0.3004 14 6 4.2205 -6.7818 0.4197 15 6 3.7694 -7.3690 1.7587 16 1 4.1804 -6.7733 2.5737 17 8 2.3423 -7.3525 1.8294 18 6 4.2693 -8.8100 1.8779 19 7 3.8357 -9.3741 3.1632 20 6 4.4912 -8.6893 4.2869 21 6 3.9674 -9.2665 5.6047 22 8 4.1938 -10.6784 5.6245 23 6 3.5691 -11.3769 4.5442 24 6 4.0890 -10.8213 3.2158 25 6 4.1042 -4.6067 1.4784 26 6 3.5092 -3.2024 1.3521 27 1 -0.4850 0.8400 0.0004 28 1 3.8753 -0.6052 0.8409 29 1 3.8745 -0.7589 -0.9324 30 1 4.0142 -2.8899 -1.9593 31 1 2.5419 -3.4385 -1.1222 32 1 3.9230 -5.3740 -1.7921 33 1 5.3103 -4.7059 -0.8984 34 1 3.8164 -7.3826 -0.3950 35 1 5.3093 -6.7865 0.3694 36 1 1.9080 -7.8638 1.1328 37 1 3.8583 -9.4058 1.0629 38 1 5.3579 -8.8226 1.8240 39 1 5.5690 -8.8404 4.2264 40 1 4.2694 -7.6231 4.2428 41 1 2.8989 -9.0680 5.6896 42 1 4.4913 -8.8020 6.4400 43 1 2.4891 -11.2399 4.5984 44 1 3.8051 -12.4390 4.6118 45 1 3.5735 -11.3112 2.3896 46 1 5.1603 -11.0063 3.1373 47 1 5.1902 -4.5373 1.5408 48 1 3.7178 -5.0859 2.3779 49 1 3.8090 -2.6018 2.2108 50 1 2.4218 -3.2699 1.3170 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251015152.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:15 Heat of formation + Delta-G solvation = -93.897328 kcal Electronic energy + Delta-G solvation = -27407.535093 eV Core-core repulsion = 23661.983562 eV Total energy + Delta-G solvation = -3745.551531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.81676 -40.22079 -38.57334 -36.58211 -35.90092 -34.40922 -32.20798 -31.89943 -31.61744 -30.12742 -28.24376 -26.57587 -25.08500 -24.57099 -24.39928 -23.04666 -21.94615 -21.34322 -20.65498 -18.87781 -18.03868 -17.29301 -17.10718 -16.87321 -16.72998 -16.33613 -16.07284 -16.02445 -15.86172 -15.74067 -15.66905 -15.27998 -15.02719 -14.78173 -14.42493 -14.14604 -13.85177 -13.64773 -13.41912 -13.06813 -12.96294 -12.81622 -12.63197 -12.47025 -12.33638 -12.24061 -12.12433 -12.04736 -11.92359 -11.71962 -11.54749 -11.41319 -11.35021 -10.88499 -10.79299 -10.54146 -9.34367 -9.21521 -8.99499 -8.30818 -6.36444 1.35073 1.36946 1.48691 2.33796 2.58193 2.90989 3.03171 3.03810 3.31394 3.66032 3.74316 3.90884 3.98234 4.02918 4.06665 4.12999 4.18813 4.25183 4.29771 4.36098 4.38998 4.44699 4.50750 4.54738 4.60871 4.67614 4.69641 4.72064 4.73689 4.80031 4.85562 4.89524 4.97355 5.00712 5.03409 5.13056 5.13532 5.16729 5.24196 5.51127 5.90997 5.95332 6.04646 6.10320 6.16506 6.22858 6.35532 6.40277 6.70913 7.03756 7.30039 8.85773 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.024707 B = 0.002568 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.993985 B =10901.844308 C =11336.162028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.245 1.245 7 C -0.547 4.547 8 H 0.031 0.969 9 C 0.159 3.841 10 N -0.530 5.530 11 C 0.061 3.939 12 C 0.071 3.929 13 N -0.544 5.544 14 C 0.029 3.971 15 C 0.118 3.882 16 H 0.085 0.915 17 O -0.556 6.556 18 C 0.032 3.968 19 N -0.538 5.538 20 C 0.018 3.982 21 C 0.063 3.937 22 O -0.406 6.406 23 C 0.059 3.941 24 C 0.020 3.980 25 C 0.073 3.927 26 C 0.066 3.934 27 H 0.266 0.734 28 H 0.032 0.968 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.011 0.989 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.380 0.620 37 H 0.095 0.905 38 H 0.049 0.951 39 H 0.041 0.959 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.110 0.890 43 H 0.056 0.944 44 H 0.116 0.884 45 H 0.101 0.899 46 H 0.040 0.960 47 H 0.042 0.958 48 H 0.082 0.918 49 H 0.066 0.934 50 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.243 -23.128 4.861 27.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.586 4.586 8 H 0.049 0.951 9 C 0.031 3.969 10 N -0.254 5.254 11 C -0.068 4.068 12 C -0.057 4.057 13 N -0.269 5.269 14 C -0.099 4.099 15 C 0.058 3.942 16 H 0.103 0.897 17 O -0.361 6.361 18 C -0.096 4.096 19 N -0.264 5.264 20 C -0.111 4.111 21 C -0.014 4.014 22 O -0.325 6.325 23 C -0.017 4.017 24 C -0.108 4.108 25 C -0.056 4.056 26 C -0.062 4.062 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.030 0.970 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.228 0.772 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.102 0.898 41 H 0.072 0.928 42 H 0.128 0.872 43 H 0.075 0.925 44 H 0.134 0.866 45 H 0.119 0.881 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.101 0.899 49 H 0.084 0.916 50 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 12.836 -22.679 5.562 26.647 hybrid contribution 0.140 0.827 -0.847 1.192 sum 12.975 -21.852 4.716 25.848 Atomic orbital electron populations 1.70098 1.08427 1.28142 1.52286 1.25974 0.95558 1.03555 0.93876 0.85641 0.79462 0.78099 0.79282 1.19028 1.21049 1.16842 1.21884 0.92749 0.93115 1.50878 0.95053 1.20062 0.91858 0.88063 0.96924 1.62678 1.57414 1.02747 1.02539 1.22008 0.97547 0.93655 0.93570 1.22101 0.97382 0.93459 0.92749 1.62011 1.60397 1.02267 1.02255 1.22818 0.98574 0.89273 0.99208 1.21885 0.82114 0.94154 0.96090 0.89699 1.86621 1.17806 1.75790 1.55919 1.22760 0.98846 0.96013 0.91984 1.62098 1.58468 1.03430 1.02363 1.22797 0.96596 0.99822 0.91842 1.22717 1.00862 0.80739 0.97055 1.87947 1.75384 1.19959 1.49185 1.22815 0.97121 0.97077 0.84711 1.22830 0.99904 0.88222 0.99852 1.22076 0.97642 0.92003 0.93833 1.21914 0.96952 0.94615 0.92767 0.92542 0.95024 0.95178 0.90775 0.97011 0.89044 0.93616 0.88940 0.93230 0.77182 0.88633 0.93266 0.94067 0.89816 0.92767 0.87176 0.92545 0.86617 0.88109 0.94154 0.93950 0.89936 0.91573 0.97015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.51 13.96 21.45 0.30 -60.22 16 2 C 0.01 0.48 5.47 84.65 0.46 0.94 16 3 Si 0.95 44.50 27.57 68.60 1.89 46.39 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.24 -10.62 6.40 99.48 0.64 -9.98 16 7 C -0.55 -31.95 8.21 25.60 0.21 -31.74 16 8 H 0.03 2.08 6.07 -2.91 -0.02 2.06 16 9 C 0.16 7.71 4.24 85.56 0.36 8.07 16 10 N -0.53 -22.46 4.92 -900.30 -4.43 -26.89 16 11 C 0.06 2.38 5.32 86.31 0.46 2.84 16 12 C 0.07 2.07 5.62 86.31 0.48 2.55 16 13 N -0.54 -15.73 4.67 -895.72 -4.19 -19.92 16 14 C 0.03 0.58 4.80 86.31 0.41 0.99 16 15 C 0.12 2.26 2.29 30.59 0.07 2.33 16 16 H 0.09 1.85 4.65 -2.39 -0.01 1.84 16 17 O -0.56 -13.60 13.06 -148.98 -1.95 -15.54 16 18 C 0.03 0.47 4.62 86.30 0.40 0.87 16 19 N -0.54 -8.97 4.59 -895.21 -4.11 -13.08 16 20 C 0.02 0.30 5.44 86.32 0.47 0.77 16 21 C 0.06 1.08 7.01 72.02 0.50 1.59 16 22 O -0.41 -7.76 10.83 -148.98 -1.61 -9.37 16 23 C 0.06 0.84 7.01 72.01 0.50 1.35 16 24 C 0.02 0.26 5.64 86.31 0.49 0.75 16 25 C 0.07 2.27 5.12 86.31 0.44 2.71 16 26 C 0.07 2.72 5.24 86.31 0.45 3.17 16 27 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 28 H 0.03 1.53 6.85 -2.39 -0.02 1.52 16 29 H 0.03 1.42 7.79 -2.38 -0.02 1.41 16 30 H 0.07 2.73 8.12 -2.38 -0.02 2.71 16 31 H 0.01 0.55 6.79 -2.39 -0.02 0.53 16 32 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.38 7.12 9.05 -74.05 -0.67 6.45 16 37 H 0.10 1.09 8.04 -2.39 -0.02 1.07 16 38 H 0.05 0.65 8.12 -2.39 -0.02 0.63 16 39 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.08 1.54 6.38 -2.39 -0.02 1.52 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.10 1.02 8.09 -2.39 -0.02 1.00 16 46 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 47 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.08 2.47 6.02 -2.39 -0.01 2.46 16 49 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 50 H 0.01 0.58 6.61 -2.38 -0.02 0.56 16 Total: -1.00 -72.75 374.80 -8.20 -80.94 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.17 Total: 20.49 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 5.72 Total: -2.82 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -12.43 Total: -120.10 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -3.56 Total: -24.91 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.89 Total: 46.39 kcal Total: -72.75 -8.20 -80.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251015152.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.952 kcal (2) G-P(sol) polarization free energy of solvation -72.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds