Wall clock time and date at job start Fri Apr 10 2020 18:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00076 * 2 1 4 4 C 1.34776 * 120.00391 * 179.97438 * 2 1 3 5 5 O 1.21291 * 119.99669 * 0.02562 * 4 2 1 6 6 C 1.50695 * 120.00593 * 180.02562 * 4 2 1 7 7 C 1.52997 * 109.47495 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47253 * 180.02562 * 7 6 4 9 9 N 1.46494 * 109.47141 * 180.02562 * 8 7 6 10 10 C 1.34778 * 120.00085 * 179.97438 * 9 8 7 11 11 O 1.21592 * 120.00153 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00234 * 179.97438 * 10 9 8 13 13 C 1.47020 * 125.64631 * 359.69659 * 12 10 9 14 14 C 1.54333 * 107.26560 * 178.84312 * 13 12 10 15 15 C 1.55155 * 103.02328 * 338.14323 * 14 13 12 16 16 O 1.42900 * 111.00372 * 277.23364 * 15 14 13 17 17 C 1.50691 * 111.04101 * 153.39271 * 15 14 13 18 18 H 1.08006 * 120.00250 * 272.60670 * 17 15 14 19 19 C 1.37875 * 120.00310 * 92.61191 * 17 15 14 20 20 N 1.31510 * 120.00513 * 173.52245 * 19 17 15 21 21 Si 1.86802 * 119.99732 * 353.51459 * 19 17 15 22 22 H 1.48500 * 109.46714 * 87.32636 * 21 19 17 23 23 H 1.48497 * 109.47211 * 207.32256 * 21 19 17 24 24 H 1.48501 * 109.47213 * 327.33034 * 21 19 17 25 25 C 1.47419 * 125.64756 * 179.97438 * 12 10 9 26 26 H 1.09004 * 109.46933 * 269.99893 * 1 2 3 27 27 H 1.08993 * 109.46844 * 30.00204 * 1 2 3 28 28 H 1.09000 * 109.47018 * 150.00385 * 1 2 3 29 29 H 1.08996 * 109.47557 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47221 * 299.99968 * 3 2 1 31 31 H 1.09001 * 109.47158 * 59.99556 * 3 2 1 32 32 H 1.09001 * 109.47258 * 60.00257 * 6 4 2 33 33 H 1.09005 * 109.47000 * 300.00928 * 6 4 2 34 34 H 1.09001 * 109.47323 * 60.00059 * 7 6 4 35 35 H 1.08995 * 109.47227 * 299.99844 * 7 6 4 36 36 H 1.09001 * 109.46949 * 59.99780 * 8 7 6 37 37 H 1.09005 * 109.46812 * 300.00070 * 8 7 6 38 38 H 0.96998 * 120.00118 * 359.97438 * 9 8 7 39 39 H 1.09000 * 109.88227 * 298.39420 * 13 12 10 40 40 H 1.09006 * 109.88114 * 59.55800 * 13 12 10 41 41 H 1.08999 * 110.85261 * 219.67316 * 14 13 12 42 42 H 1.08999 * 110.51231 * 96.45317 * 14 13 12 43 43 H 0.96696 * 114.00153 * 168.40146 * 16 15 14 44 44 H 0.96999 * 120.00681 * 179.97438 * 20 19 17 45 45 H 1.08999 * 110.36942 * 322.93175 * 25 12 10 46 46 H 1.09005 * 110.36927 * 85.15093 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1390 -1.1671 0.0005 5 8 1.5325 -2.2176 0.0005 6 6 3.6459 -1.1672 0.0011 7 6 4.1559 -2.6096 0.0010 8 6 5.6860 -2.6096 0.0022 9 7 6.1743 -3.9908 0.0015 10 6 7.4994 -4.2371 0.0018 11 8 8.2895 -3.3129 0.0032 12 7 7.9487 -5.5078 0.0017 13 6 7.1079 -6.7139 0.0075 14 6 8.0546 -7.9323 -0.0249 15 6 9.3648 -7.3417 -0.6097 16 8 9.3092 -7.2859 -2.0365 17 6 10.5653 -8.1275 -0.1491 18 1 11.0504 -7.8759 0.7825 19 6 11.0446 -9.1675 -0.9169 20 7 12.1644 -9.7704 -0.5821 21 14 10.1033 -9.7203 -2.4327 22 1 10.5310 -8.9123 -3.6029 23 1 10.3831 -11.1552 -2.6932 24 1 8.6476 -9.5327 -2.2072 25 6 9.3645 -5.9184 0.0015 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 3.2691 1.0696 0.0005 30 1 1.9342 1.8403 -0.8900 31 1 1.9341 1.8403 0.8899 32 1 4.0089 -0.6532 0.8911 33 1 4.0096 -0.6534 -0.8888 34 1 3.7930 -3.1233 -0.8893 35 1 3.7923 -3.1237 0.8907 36 1 6.0485 -2.0961 0.8927 37 1 6.0500 -2.0954 -0.8873 38 1 5.5440 -4.7281 0.0007 39 1 6.5003 -6.7378 0.9121 40 1 6.4657 -6.7223 -0.8733 41 1 7.6598 -8.7133 -0.6748 42 1 8.2199 -8.3144 0.9825 43 1 10.0200 -6.7676 -2.4378 44 1 12.5014 -10.5023 -1.1221 45 1 9.9560 -5.2410 -0.6145 46 1 9.7531 -5.9412 1.0197 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325965160.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:25 Heat of formation + Delta-G solvation = -107.936805 kcal Electronic energy + Delta-G solvation = -26100.332282 eV Core-core repulsion = 22218.338859 eV Total energy + Delta-G solvation = -3881.993423 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.32613 -39.85707 -37.86504 -36.08112 -35.56532 -34.69061 -32.81706 -32.35068 -30.31360 -28.99246 -28.30803 -27.40240 -25.86629 -24.71252 -22.57800 -21.99075 -19.97722 -19.76952 -19.34154 -17.93264 -17.42210 -17.22984 -16.68309 -16.50381 -15.79773 -15.69397 -15.16228 -15.04445 -14.73371 -14.28865 -13.98207 -13.70604 -13.53681 -13.34489 -13.11702 -13.03207 -12.80229 -12.66928 -12.44329 -12.39948 -12.14127 -11.91807 -11.72000 -11.58825 -11.51089 -11.17837 -11.00089 -10.48463 -10.36951 -10.23466 -10.18905 -9.82049 -9.22252 -9.19586 -8.98597 -8.65307 -8.51187 -7.97373 -6.17964 -4.29941 2.22134 2.50316 2.96189 3.47186 3.53363 3.53782 3.70582 4.04790 4.23957 4.50914 4.51530 4.62479 4.65923 4.77384 4.80009 4.99612 5.05122 5.09548 5.09936 5.16434 5.22891 5.23198 5.36234 5.36832 5.49496 5.60365 5.78500 5.86424 5.88007 5.92724 5.99378 6.11193 6.50936 6.55462 6.61876 6.68476 6.74996 6.84296 7.07054 7.35555 7.50136 7.73685 8.13878 8.30372 8.63804 8.82953 8.91064 9.43557 10.90798 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.034557 B = 0.002220 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.065765 B =12610.739958 C =12987.555412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.627 5.627 3 C 0.073 3.927 4 C 0.512 3.488 5 O -0.537 6.537 6 C -0.136 4.136 7 C -0.117 4.117 8 C 0.141 3.859 9 N -0.750 5.750 10 C 0.719 3.281 11 O -0.600 6.600 12 N -0.629 5.629 13 C 0.101 3.899 14 C -0.120 4.120 15 C 0.219 3.781 16 O -0.559 6.559 17 C -0.551 4.551 18 H 0.082 0.918 19 C 0.074 3.926 20 N -0.888 5.888 21 Si 0.952 3.048 22 H -0.293 1.293 23 H -0.327 1.327 24 H -0.270 1.270 25 C 0.108 3.892 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.396 0.604 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.371 0.629 44 H 0.266 0.734 45 H 0.069 0.931 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.205 19.870 0.998 29.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.361 5.361 3 C -0.070 4.070 4 C 0.301 3.699 5 O -0.413 6.413 6 C -0.176 4.176 7 C -0.156 4.156 8 C 0.016 3.984 9 N -0.406 5.406 10 C 0.421 3.579 11 O -0.479 6.479 12 N -0.365 5.365 13 C -0.023 4.023 14 C -0.158 4.158 15 C 0.178 3.822 16 O -0.367 6.367 17 C -0.589 4.589 18 H 0.100 0.900 19 C -0.131 4.131 20 N -0.523 5.523 21 Si 0.787 3.213 22 H -0.221 1.221 23 H -0.258 1.258 24 H -0.196 1.196 25 C -0.014 4.014 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.230 0.770 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.219 0.781 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.358 19.594 1.089 29.005 hybrid contribution -0.282 -0.146 -0.780 0.842 sum -21.640 19.448 0.309 29.096 Atomic orbital electron populations 1.21621 0.79164 1.03148 1.01913 1.47791 1.07248 1.06584 1.74513 1.21902 0.97737 0.85199 1.02162 1.20804 0.90460 0.83088 0.75552 1.90722 1.70489 1.30952 1.49128 1.21590 0.91572 0.99584 1.04877 1.21541 0.94127 0.95443 1.04440 1.21091 0.92396 0.82705 1.02195 1.45057 1.05663 1.08499 1.81417 1.15447 0.82158 0.82271 0.78018 1.90881 1.55034 1.42774 1.59248 1.47709 1.09194 1.03177 1.76455 1.22062 0.94331 0.86094 0.99773 1.22946 0.95060 0.95610 1.02172 1.20254 0.94136 0.90107 0.77665 1.86107 1.54971 1.73711 1.21902 1.21103 1.12033 1.16202 1.09543 0.90045 1.25116 0.94251 0.95242 0.98492 1.69966 1.19611 1.22937 1.39744 0.85636 0.80607 0.73690 0.81324 1.22098 1.25836 1.19578 1.22979 0.79295 0.97520 1.01628 0.92737 0.91254 0.90470 0.89811 0.91832 0.91862 0.88323 0.88322 0.90408 0.90431 0.91753 0.91764 0.77002 0.92689 0.92447 0.90181 0.89623 0.78079 0.92419 0.91234 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.49 10.48 59.85 0.63 1.11 16 2 N -0.63 -4.19 3.27 -189.52 -0.62 -4.81 16 3 C 0.07 0.23 10.60 59.85 0.63 0.87 16 4 C 0.51 4.66 7.67 -10.99 -0.08 4.57 16 5 O -0.54 -7.05 15.56 5.55 0.09 -6.96 16 6 C -0.14 -0.90 4.01 -27.89 -0.11 -1.01 16 7 C -0.12 -1.03 4.62 -26.73 -0.12 -1.15 16 8 C 0.14 1.53 5.67 -4.04 -0.02 1.51 16 9 N -0.75 -10.25 5.52 -65.22 -0.36 -10.61 16 10 C 0.72 13.11 8.49 -86.91 -0.74 12.38 16 11 O -0.60 -12.95 16.60 5.28 0.09 -12.87 16 12 N -0.63 -11.59 3.33 -176.24 -0.59 -12.18 16 13 C 0.10 1.64 6.15 -3.06 -0.02 1.62 16 14 C -0.12 -2.32 5.90 -24.89 -0.15 -2.46 16 15 C 0.22 4.82 0.70 -89.63 -0.06 4.75 16 16 O -0.56 -12.22 8.52 -35.23 -0.30 -12.52 16 17 C -0.55 -14.51 8.89 -34.45 -0.31 -14.81 16 18 H 0.08 2.33 8.00 -52.48 -0.42 1.91 16 19 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 20 N -0.89 -26.20 13.96 55.43 0.77 -25.42 16 21 Si 0.95 23.32 24.93 -169.99 -4.24 19.08 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.33 -8.23 7.11 56.52 0.40 -7.83 16 24 H -0.27 -6.45 5.42 56.52 0.31 -6.14 16 25 C 0.11 2.23 6.07 -2.54 -0.02 2.22 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 28 H 0.08 0.57 7.42 -51.93 -0.39 0.19 16 29 H 0.08 0.19 5.77 -51.93 -0.30 -0.11 16 30 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.10 0.48 7.79 -51.93 -0.40 0.07 16 33 H 0.10 0.49 7.79 -51.93 -0.40 0.08 16 34 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.40 4.69 7.46 -40.82 -0.30 4.39 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.59 6.65 -51.93 -0.35 1.24 16 42 H 0.09 1.62 8.03 -51.93 -0.42 1.20 16 43 H 0.37 7.32 8.98 45.56 0.41 7.72 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.07 1.47 8.02 -51.93 -0.42 1.05 16 46 H 0.07 1.46 7.99 -51.93 -0.41 1.05 16 LS Contribution 369.49 15.07 5.57 5.57 Total: -1.00 -35.90 369.49 -6.91 -42.80 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.85 Total: 6.36 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: -0.47 Total: 11.55 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.79 Total: -53.02 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.13 Total: -32.35 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.24 Total: 19.08 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.90 -6.91 -42.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325965160.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.135 kcal (2) G-P(sol) polarization free energy of solvation -35.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds