Wall clock time and date at job start Fri Apr 10 2020 18:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00076 * 2 1 4 4 C 1.34776 * 120.00391 * 179.97438 * 2 1 3 5 5 O 1.21291 * 119.99669 * 0.02562 * 4 2 1 6 6 C 1.50695 * 120.00593 * 180.02562 * 4 2 1 7 7 C 1.52997 * 109.47495 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47253 * 180.02562 * 7 6 4 9 9 N 1.46494 * 109.47141 * 180.02562 * 8 7 6 10 10 C 1.34778 * 120.00085 * 179.97438 * 9 8 7 11 11 O 1.21592 * 120.00153 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00234 * 179.97438 * 10 9 8 13 13 C 1.47020 * 125.64631 * 359.69659 * 12 10 9 14 14 C 1.54333 * 107.26560 * 178.84312 * 13 12 10 15 15 C 1.55155 * 103.02328 * 338.14323 * 14 13 12 16 16 O 1.42900 * 111.00372 * 277.23364 * 15 14 13 17 17 C 1.50691 * 111.04101 * 153.39271 * 15 14 13 18 18 H 1.08006 * 120.00250 * 272.60670 * 17 15 14 19 19 C 1.37875 * 120.00310 * 92.61191 * 17 15 14 20 20 N 1.31510 * 120.00513 * 173.52245 * 19 17 15 21 21 Si 1.86802 * 119.99732 * 353.51459 * 19 17 15 22 22 H 1.48500 * 109.46714 * 87.32636 * 21 19 17 23 23 H 1.48497 * 109.47211 * 207.32256 * 21 19 17 24 24 H 1.48501 * 109.47213 * 327.33034 * 21 19 17 25 25 C 1.47419 * 125.64756 * 179.97438 * 12 10 9 26 26 H 1.09004 * 109.46933 * 269.99893 * 1 2 3 27 27 H 1.08993 * 109.46844 * 30.00204 * 1 2 3 28 28 H 1.09000 * 109.47018 * 150.00385 * 1 2 3 29 29 H 1.08996 * 109.47557 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47221 * 299.99968 * 3 2 1 31 31 H 1.09001 * 109.47158 * 59.99556 * 3 2 1 32 32 H 1.09001 * 109.47258 * 60.00257 * 6 4 2 33 33 H 1.09005 * 109.47000 * 300.00928 * 6 4 2 34 34 H 1.09001 * 109.47323 * 60.00059 * 7 6 4 35 35 H 1.08995 * 109.47227 * 299.99844 * 7 6 4 36 36 H 1.09001 * 109.46949 * 59.99780 * 8 7 6 37 37 H 1.09005 * 109.46812 * 300.00070 * 8 7 6 38 38 H 0.96998 * 120.00118 * 359.97438 * 9 8 7 39 39 H 1.09000 * 109.88227 * 298.39420 * 13 12 10 40 40 H 1.09006 * 109.88114 * 59.55800 * 13 12 10 41 41 H 1.08999 * 110.85261 * 219.67316 * 14 13 12 42 42 H 1.08999 * 110.51231 * 96.45317 * 14 13 12 43 43 H 0.96696 * 114.00153 * 168.40146 * 16 15 14 44 44 H 0.96999 * 120.00681 * 179.97438 * 20 19 17 45 45 H 1.08999 * 110.36942 * 322.93175 * 25 12 10 46 46 H 1.09005 * 110.36927 * 85.15093 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1390 -1.1671 0.0005 5 8 1.5325 -2.2176 0.0005 6 6 3.6459 -1.1672 0.0011 7 6 4.1559 -2.6096 0.0010 8 6 5.6860 -2.6096 0.0022 9 7 6.1743 -3.9908 0.0015 10 6 7.4994 -4.2371 0.0018 11 8 8.2895 -3.3129 0.0032 12 7 7.9487 -5.5078 0.0017 13 6 7.1079 -6.7139 0.0075 14 6 8.0546 -7.9323 -0.0249 15 6 9.3648 -7.3417 -0.6097 16 8 9.3092 -7.2859 -2.0365 17 6 10.5653 -8.1275 -0.1491 18 1 11.0504 -7.8759 0.7825 19 6 11.0446 -9.1675 -0.9169 20 7 12.1644 -9.7704 -0.5821 21 14 10.1033 -9.7203 -2.4327 22 1 10.5310 -8.9123 -3.6029 23 1 10.3831 -11.1552 -2.6932 24 1 8.6476 -9.5327 -2.2072 25 6 9.3645 -5.9184 0.0015 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 3.2691 1.0696 0.0005 30 1 1.9342 1.8403 -0.8900 31 1 1.9341 1.8403 0.8899 32 1 4.0089 -0.6532 0.8911 33 1 4.0096 -0.6534 -0.8888 34 1 3.7930 -3.1233 -0.8893 35 1 3.7923 -3.1237 0.8907 36 1 6.0485 -2.0961 0.8927 37 1 6.0500 -2.0954 -0.8873 38 1 5.5440 -4.7281 0.0007 39 1 6.5003 -6.7378 0.9121 40 1 6.4657 -6.7223 -0.8733 41 1 7.6598 -8.7133 -0.6748 42 1 8.2199 -8.3144 0.9825 43 1 10.0200 -6.7676 -2.4378 44 1 12.5014 -10.5023 -1.1221 45 1 9.9560 -5.2410 -0.6145 46 1 9.7531 -5.9412 1.0197 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325965160.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:25 Heat of formation + Delta-G solvation = -136.842937 kcal Electronic energy + Delta-G solvation = -26101.585746 eV Core-core repulsion = 22218.338859 eV Total energy + Delta-G solvation = -3883.246887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.35865 -40.88801 -39.42036 -36.81227 -36.46480 -36.30023 -34.44593 -33.77185 -31.82381 -30.01870 -29.47742 -28.07956 -27.05187 -25.93130 -24.01781 -22.81617 -21.55791 -21.12127 -20.07135 -19.54888 -18.93581 -17.99088 -17.37348 -17.32212 -17.05602 -16.97636 -16.67034 -16.53757 -15.97501 -15.54395 -15.21663 -15.00713 -14.53347 -14.33893 -14.25586 -14.00467 -13.79893 -13.46022 -13.42133 -13.34340 -13.30656 -13.17594 -13.08351 -12.73969 -12.68923 -12.39741 -12.28139 -12.20335 -11.94406 -11.88743 -11.35817 -11.21899 -10.90739 -10.63010 -10.40230 -10.19700 -9.69662 -9.40845 -8.32636 -6.46114 1.51796 1.54396 1.59609 1.60644 1.75979 2.09929 2.12971 2.47029 2.98028 3.05117 3.50320 3.51639 3.84840 3.98087 4.01412 4.07140 4.16641 4.27618 4.35950 4.44037 4.48063 4.50963 4.55888 4.61256 4.65622 4.71782 4.77881 4.84641 4.90724 4.96961 4.99021 5.12650 5.15326 5.22390 5.22964 5.38919 5.50038 5.52280 5.55437 6.06442 6.10419 6.33666 6.59662 6.90737 7.00709 7.13918 7.31647 7.53779 8.80155 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.034557 B = 0.002220 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.065765 B =12610.739958 C =12987.555412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.626 5.626 3 C 0.066 3.934 4 C 0.504 3.496 5 O -0.588 6.588 6 C -0.130 4.130 7 C -0.104 4.104 8 C 0.142 3.858 9 N -0.734 5.734 10 C 0.715 3.285 11 O -0.638 6.638 12 N -0.632 5.632 13 C 0.107 3.893 14 C -0.118 4.118 15 C 0.216 3.784 16 O -0.559 6.559 17 C -0.547 4.547 18 H 0.045 0.955 19 C 0.025 3.975 20 N -0.936 5.936 21 Si 1.011 2.989 22 H -0.287 1.287 23 H -0.338 1.338 24 H -0.255 1.255 25 C 0.118 3.882 26 H 0.056 0.944 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.407 0.593 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.379 0.621 44 H 0.267 0.733 45 H 0.059 0.941 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.639 21.754 0.362 32.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.359 5.359 3 C -0.076 4.076 4 C 0.294 3.706 5 O -0.469 6.469 6 C -0.170 4.170 7 C -0.143 4.143 8 C 0.018 3.982 9 N -0.391 5.391 10 C 0.417 3.583 11 O -0.520 6.520 12 N -0.368 5.368 13 C -0.015 4.015 14 C -0.157 4.157 15 C 0.175 3.825 16 O -0.368 6.368 17 C -0.585 4.585 18 H 0.063 0.937 19 C -0.175 4.175 20 N -0.574 5.574 21 Si 0.844 3.156 22 H -0.214 1.214 23 H -0.270 1.270 24 H -0.181 1.181 25 C -0.006 4.006 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.243 0.757 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.229 0.771 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.854 21.541 0.456 32.144 hybrid contribution 0.477 -0.611 -0.509 0.928 sum -23.377 20.930 -0.053 31.377 Atomic orbital electron populations 1.21697 0.79017 1.03372 1.02161 1.47968 1.07735 1.07206 1.72975 1.22162 0.98184 0.83751 1.03464 1.21241 0.91416 0.83020 0.74963 1.90698 1.71562 1.32814 1.51847 1.21595 0.89877 0.98483 1.07023 1.21387 0.92278 0.96954 1.03674 1.21242 0.93579 0.81119 1.02285 1.45017 1.04082 1.10186 1.79770 1.15607 0.83252 0.81537 0.77892 1.90854 1.56407 1.43802 1.60968 1.47633 1.08349 1.04099 1.76763 1.22129 0.93518 0.83477 1.02378 1.22860 0.94029 0.96920 1.01851 1.20137 0.93885 0.90515 0.77920 1.86064 1.55312 1.73940 1.21482 1.21331 1.13067 1.16109 1.07969 0.93661 1.25867 0.94833 0.95528 1.01300 1.70083 1.21601 1.24184 1.41509 0.84674 0.80070 0.72575 0.78244 1.21439 1.27020 1.18051 1.22617 0.80959 0.96474 1.00585 0.92513 0.88598 0.92651 0.88545 0.90462 0.90610 0.86055 0.86127 0.91291 0.91144 0.91554 0.91752 0.75668 0.89393 0.90542 0.90125 0.89655 0.77133 0.92439 0.92223 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.48 127.77 1.34 2.16 16 2 N -0.63 -7.09 3.27 -871.90 -2.85 -9.94 16 3 C 0.07 0.21 10.60 127.77 1.35 1.57 16 4 C 0.50 8.39 7.67 87.66 0.67 9.06 16 5 O -0.59 -15.31 15.56 -3.06 -0.05 -15.36 16 6 C -0.13 -1.36 4.01 29.85 0.12 -1.24 16 7 C -0.10 -1.60 4.62 30.59 0.14 -1.46 16 8 C 0.14 2.73 5.67 86.38 0.49 3.22 16 9 N -0.73 -18.18 5.52 -478.53 -2.64 -20.82 16 10 C 0.72 24.70 8.49 179.05 1.52 26.22 16 11 O -0.64 -26.87 16.60 -4.01 -0.07 -26.93 16 12 N -0.63 -22.03 3.33 -829.75 -2.76 -24.79 16 13 C 0.11 3.13 6.15 86.73 0.53 3.66 16 14 C -0.12 -4.32 5.90 31.79 0.19 -4.14 16 15 C 0.22 9.31 0.70 -10.16 -0.01 9.30 16 16 O -0.56 -23.35 8.52 -148.98 -1.27 -24.62 16 17 C -0.55 -29.21 8.89 25.60 0.23 -28.98 16 18 H 0.05 2.69 8.00 -2.91 -0.02 2.67 16 19 C 0.02 1.37 5.46 84.65 0.46 1.83 16 20 N -0.94 -56.67 13.96 21.45 0.30 -56.37 16 21 Si 1.01 47.70 24.93 68.60 1.71 49.41 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.34 -16.46 7.11 99.48 0.71 -15.76 16 24 H -0.26 -11.34 5.42 99.48 0.54 -10.80 16 25 C 0.12 4.78 6.07 86.85 0.53 5.31 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.10 0.44 8.07 -2.39 -0.02 0.42 16 28 H 0.05 0.82 7.42 -2.39 -0.02 0.81 16 29 H 0.10 0.07 5.77 -2.39 -0.01 0.05 16 30 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.12 0.75 7.79 -2.39 -0.02 0.73 16 33 H 0.12 0.76 7.79 -2.38 -0.02 0.74 16 34 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 35 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.41 8.34 7.46 -92.71 -0.69 7.65 16 39 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 41 H 0.08 2.95 6.65 -2.39 -0.02 2.94 16 42 H 0.08 3.10 8.03 -2.39 -0.02 3.08 16 43 H 0.38 14.39 8.98 -74.06 -0.67 13.73 16 44 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 45 H 0.06 2.52 8.02 -2.39 -0.02 2.50 16 46 H 0.06 2.47 7.99 -2.38 -0.02 2.45 16 Total: -1.00 -79.42 369.49 -0.59 -80.01 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -0.53 Total: 22.87 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: 7.57 Total: 26.53 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -7.95 Total: -111.91 kcal Atomic # 8 Polarization: -65.52 SS G_CDS: -1.38 Total: -66.91 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 1.71 Total: 49.41 kcal Total: -79.42 -0.59 -80.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325965160.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.833 kcal (2) G-P(sol) polarization free energy of solvation -79.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds