Wall clock time and date at job start Fri Apr 10 2020 18:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 111.00247 * 2 1 4 4 C 1.52999 * 109.47276 * 66.04621 * 3 2 1 5 5 N 1.46497 * 109.46992 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99525 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72583 * 6 5 4 9 9 C 1.53004 * 109.47208 * 180.27843 * 8 6 5 10 10 H 1.09003 * 110.32891 * 307.24990 * 9 8 6 11 11 C 1.54475 * 110.37472 * 184.99690 * 9 8 6 12 12 C 1.54504 * 104.06591 * 217.19151 * 11 9 8 13 13 C 1.54485 * 104.06267 * 359.97438 * 12 11 9 14 14 O 1.44422 * 104.79996 * 23.98081 * 13 12 11 15 15 C 1.46908 * 110.99522 * 236.04633 * 2 1 3 16 16 C 1.50702 * 109.47006 * 293.95187 * 15 2 1 17 17 O 1.21293 * 119.99932 * 0.02562 * 16 15 2 18 18 N 1.34772 * 119.99754 * 180.02562 * 16 15 2 19 19 C 1.37097 * 119.99981 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99899 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00359 * 179.97438 * 19 18 16 22 22 N 1.31418 * 119.99853 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00370 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46903 * 60.00477 * 23 21 19 25 25 H 1.48502 * 109.47156 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47035 * 300.00630 * 23 21 19 27 27 H 1.09001 * 109.47001 * 59.99948 * 1 2 3 28 28 H 1.08995 * 109.47627 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46833 * 300.00346 * 1 2 3 30 30 H 1.09009 * 109.46854 * 306.04377 * 3 2 1 31 31 H 1.08993 * 109.47139 * 186.04832 * 3 2 1 32 32 H 1.08995 * 109.46838 * 59.99864 * 4 3 2 33 33 H 1.09001 * 109.46617 * 300.00199 * 4 3 2 34 34 H 0.97000 * 120.00580 * 0.02562 * 5 4 3 35 35 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 36 36 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 37 37 H 1.08997 * 110.51053 * 335.84067 * 11 9 8 38 38 H 1.09005 * 110.50606 * 98.40620 * 11 9 8 39 39 H 1.08994 * 110.51695 * 118.64917 * 12 11 9 40 40 H 1.09008 * 110.51240 * 241.22033 * 12 11 9 41 41 H 1.08999 * 110.36699 * 142.80989 * 13 12 11 42 42 H 1.08996 * 110.37045 * 265.15158 * 13 12 11 43 43 H 1.08994 * 109.47094 * 53.95415 * 15 2 1 44 44 H 1.09004 * 109.46420 * 173.95852 * 15 2 1 45 45 H 0.96996 * 119.99928 * 0.02562 * 18 16 15 46 46 H 0.96992 * 120.00060 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0575 1.3182 5 7 2.1572 3.4249 1.3184 6 6 1.9559 4.2239 2.3850 7 8 1.3401 3.8108 3.3447 8 6 2.5019 5.6286 2.3877 9 6 2.1423 6.3130 3.7080 10 1 1.0707 6.2388 3.8935 11 6 2.5826 7.7934 3.6838 12 6 3.0699 8.0639 5.1248 13 6 2.8657 6.7149 5.8495 14 8 2.8844 5.7248 4.7983 15 6 1.9954 -0.7660 -1.1377 16 6 1.6368 -2.2205 -0.9729 17 8 1.0046 -2.5831 -0.0034 18 7 2.0187 -3.1182 -1.9028 19 6 1.6930 -4.4414 -1.7526 20 1 1.1300 -4.7643 -0.8894 21 6 2.0862 -5.3669 -2.7116 22 7 2.7708 -4.9738 -3.7623 23 14 1.6418 -7.1697 -2.5074 24 1 0.1645 -7.3125 -2.4555 25 1 2.1744 -7.9441 -3.6571 26 1 2.2335 -7.6856 -1.2469 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.5612 1.9273 -0.8310 31 1 3.0797 1.3443 -0.1083 32 1 2.0659 1.5015 2.1491 33 1 0.5473 2.0845 1.4264 34 1 2.6494 3.7555 0.5507 35 1 3.5861 5.5973 2.2783 36 1 2.0691 6.1884 1.5587 37 1 3.3954 7.9385 2.9722 38 1 1.7396 8.4386 3.4360 39 1 4.1236 8.3427 5.1258 40 1 2.4689 8.8447 5.5911 41 1 3.6780 6.5359 6.5539 42 1 1.9055 6.7028 6.3652 43 1 1.5610 -0.3873 -2.0628 44 1 3.0797 -0.6612 -1.1756 45 1 2.5246 -2.8281 -2.6779 46 1 3.0456 -5.6199 -4.4315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492196490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:45 Heat of formation + Delta-G solvation = -114.290186 kcal Electronic energy + Delta-G solvation = -25298.730399 eV Core-core repulsion = 21416.461473 eV Total energy + Delta-G solvation = -3882.268926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.27053 -39.15301 -38.58014 -36.75693 -34.58751 -33.78764 -32.74982 -32.05100 -31.23929 -29.55375 -27.73909 -26.87897 -25.19495 -23.81763 -22.55788 -21.39590 -21.20236 -20.40853 -19.15435 -17.84215 -17.47609 -16.57301 -16.52847 -16.07730 -15.96942 -15.68508 -15.60425 -14.86967 -14.60219 -14.51972 -14.10084 -14.03364 -13.74273 -13.46408 -13.26440 -13.08766 -12.70874 -12.38739 -12.14000 -12.11181 -11.84446 -11.62632 -11.53320 -11.49037 -11.36727 -11.25582 -11.05064 -11.01442 -10.91101 -10.42786 -10.20218 -10.02344 -9.94113 -9.45699 -9.13284 -8.46360 -7.97532 -7.87326 -6.40563 -3.81281 2.55566 2.93009 3.21431 3.26938 3.31700 3.54994 3.91405 4.05140 4.15282 4.24867 4.33983 4.52030 4.59713 4.67336 4.83592 4.87283 4.98254 5.04286 5.09194 5.14840 5.24841 5.26818 5.31156 5.39582 5.41820 5.46142 5.59605 5.65286 5.68296 5.70561 5.87602 5.92755 5.95179 6.04492 6.27716 6.32147 6.56234 6.57514 7.21325 7.33086 7.37533 7.56425 8.07453 8.13240 8.63139 9.19411 9.55474 10.07588 10.77130 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.045420 B = 0.001730 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.320833 B =16176.491091 C =16319.569293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.045 3.955 4 C 0.122 3.878 5 N -0.733 5.733 6 C 0.512 3.488 7 O -0.527 6.527 8 C -0.136 4.136 9 C 0.090 3.910 10 H 0.077 0.923 11 C -0.153 4.153 12 C -0.156 4.156 13 C 0.043 3.957 14 O -0.359 6.359 15 C 0.047 3.953 16 C 0.443 3.557 17 O -0.576 6.576 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.273 1.273 27 H 0.015 0.985 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.398 0.602 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.077 28.074 8.017 29.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.240 5.240 3 C -0.084 4.084 4 C -0.002 4.002 5 N -0.386 5.386 6 C 0.297 3.703 7 O -0.402 6.402 8 C -0.176 4.176 9 C 0.032 3.968 10 H 0.095 0.905 11 C -0.190 4.190 12 C -0.193 4.193 13 C -0.034 4.034 14 O -0.278 6.278 15 C -0.084 4.084 16 C 0.229 3.771 17 O -0.460 6.460 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 H 0.033 0.967 28 H 0.116 0.884 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.232 0.768 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.523 26.937 9.646 28.653 hybrid contribution 0.122 0.063 -1.699 1.705 sum 1.644 27.000 7.947 28.193 Atomic orbital electron populations 1.22626 0.86491 1.04733 0.99093 1.61440 1.08944 1.10503 1.43066 1.22252 1.00711 0.89730 0.95689 1.21318 0.99507 0.80808 0.98552 1.45958 1.58371 1.14475 1.19747 1.20487 0.80064 0.87373 0.82341 1.90752 1.40328 1.75484 1.33652 1.21776 1.03739 0.93736 0.98395 1.22700 0.96845 0.90479 0.86809 0.90477 1.23020 1.01940 0.96419 0.97663 1.22939 1.02358 0.98510 0.95537 1.23390 1.01796 0.86932 0.91291 1.89239 1.74392 1.39363 1.24758 1.21869 1.00673 0.94234 0.91633 1.19710 0.85531 0.86609 0.85270 1.90495 1.43825 1.80101 1.31575 1.41849 1.49436 1.07344 1.21462 1.19659 1.32984 0.82293 1.07928 0.87940 1.25255 0.96812 1.00563 0.95289 1.69604 1.38056 1.35848 1.10904 0.85914 0.78891 0.81687 0.77702 1.19934 1.21007 1.19888 0.96666 0.88383 0.91842 0.94636 0.90313 0.90308 0.91271 0.76843 0.87936 0.87583 0.90426 0.90324 0.90664 0.90570 0.89137 0.92264 0.93373 0.89326 0.77510 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.96 60.07 0.54 0.84 16 2 N -0.52 -8.58 4.50 -244.36 -1.10 -9.68 16 3 C 0.05 0.55 5.07 -3.82 -0.02 0.53 16 4 C 0.12 1.52 5.60 -4.04 -0.02 1.49 16 5 N -0.73 -7.12 5.56 -60.30 -0.33 -7.45 16 6 C 0.51 5.83 7.76 -10.98 -0.09 5.74 16 7 O -0.53 -8.55 15.61 -1.06 -0.02 -8.56 16 8 C -0.14 -0.99 5.33 -27.88 -0.15 -1.13 16 9 C 0.09 0.77 2.74 -25.96 -0.07 0.70 16 10 H 0.08 0.75 7.91 -51.93 -0.41 0.33 16 11 C -0.15 -0.83 6.63 -25.17 -0.17 -1.00 16 12 C -0.16 -0.85 7.09 -25.16 -0.18 -1.03 16 13 C 0.04 0.33 7.63 37.94 0.29 0.62 16 14 O -0.36 -4.09 10.92 -41.84 -0.46 -4.54 16 15 C 0.05 0.83 5.45 -4.97 -0.03 0.81 16 16 C 0.44 10.47 7.47 -10.99 -0.08 10.39 16 17 O -0.58 -15.59 13.91 5.55 0.08 -15.52 16 18 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 19 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 20 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 23 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 27 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.10 1.97 5.82 -51.93 -0.30 1.66 16 29 H 0.06 0.95 6.47 -51.93 -0.34 0.62 16 30 H 0.04 0.38 8.12 -51.92 -0.42 -0.04 16 31 H 0.08 0.86 7.93 -51.93 -0.41 0.45 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 0.94 6.55 -51.93 -0.34 0.60 16 34 H 0.40 2.51 8.47 -40.82 -0.35 2.16 16 35 H 0.10 0.62 8.14 -51.92 -0.42 0.19 16 36 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.34 7.87 -51.93 -0.41 -0.06 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.32 8.14 -51.92 -0.42 -0.11 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 44 H 0.09 1.40 7.93 -51.93 -0.41 0.98 16 45 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 46 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 376.46 15.07 5.67 5.67 Total: -1.00 -35.27 376.46 -8.18 -43.45 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -7.45 Total: 8.67 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -0.21 Total: 9.97 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.77 Total: -55.24 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.40 Total: -28.63 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.27 -8.18 -43.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492196490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.841 kcal (2) G-P(sol) polarization free energy of solvation -35.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds