Wall clock time and date at job start Fri Apr 10 2020 18:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.53001 * 109.47528 * 293.95568 * 3 2 1 5 5 N 1.46494 * 109.47201 * 180.02562 * 4 3 2 6 6 C 1.34782 * 119.99530 * 179.97438 * 5 4 3 7 7 O 1.21275 * 120.00466 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99693 * 180.02562 * 6 5 4 9 9 H 1.09007 * 109.52125 * 299.99813 * 8 6 5 10 10 C 1.53172 * 109.52357 * 179.87370 * 8 6 5 11 11 C 1.53175 * 109.04062 * 183.11353 * 10 8 6 12 12 C 1.53088 * 109.16078 * 56.97763 * 11 10 8 13 13 O 1.42896 * 109.41831 * 302.39131 * 12 11 10 14 14 C 1.42910 * 114.15375 * 61.12695 * 13 12 11 15 15 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 16 16 C 1.50695 * 109.46944 * 66.04457 * 15 2 1 17 17 O 1.21293 * 120.00365 * 0.02562 * 16 15 2 18 18 N 1.34779 * 119.99729 * 179.97438 * 16 15 2 19 19 C 1.37096 * 120.00063 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00043 * 359.97438 * 19 18 16 21 21 C 1.38944 * 120.00370 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00401 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99916 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47361 * 90.00093 * 23 21 19 25 25 H 1.48499 * 109.47333 * 210.00162 * 23 21 19 26 26 H 1.48503 * 109.46985 * 330.00071 * 23 21 19 27 27 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 28 28 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 30 30 H 1.09009 * 109.47296 * 53.95365 * 3 2 1 31 31 H 1.09002 * 109.47055 * 173.95064 * 3 2 1 32 32 H 1.09001 * 109.46792 * 299.99900 * 4 3 2 33 33 H 1.09001 * 109.46841 * 59.99659 * 4 3 2 34 34 H 0.97001 * 120.00339 * 0.02562 * 5 4 3 35 35 H 1.09005 * 109.54565 * 302.98144 * 10 8 6 36 36 H 1.09002 * 109.54561 * 63.15369 * 10 8 6 37 37 H 1.08998 * 109.52485 * 176.88400 * 11 10 8 38 38 H 1.09007 * 109.52062 * 297.07553 * 11 10 8 39 39 H 1.08997 * 109.48248 * 62.38088 * 12 11 10 40 40 H 1.09005 * 109.48279 * 182.41100 * 12 11 10 41 41 H 1.08998 * 109.54266 * 178.92267 * 14 13 12 42 42 H 1.09011 * 109.42431 * 58.88726 * 14 13 12 43 43 H 1.09002 * 109.46783 * 186.04686 * 15 2 1 44 44 H 1.09002 * 109.46955 * 306.04307 * 15 2 1 45 45 H 0.96997 * 120.00358 * 0.02562 * 18 16 15 46 46 H 0.97002 * 120.00157 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 7 2.1569 3.4250 -1.3184 6 6 1.9565 4.2237 -2.3854 7 8 1.3415 3.8103 -3.3454 8 6 2.4976 5.6302 -2.3858 9 1 2.0641 6.1875 -1.5553 10 6 2.1369 6.3170 -3.7066 11 6 2.7579 7.7171 -3.7277 12 6 4.2711 7.5986 -3.5286 13 8 4.5370 6.9238 -2.2974 14 6 4.0208 5.5925 -2.2370 15 6 1.9955 -0.7660 1.1376 16 6 1.6370 -2.2204 0.9729 17 8 1.0054 -2.5833 0.0030 18 7 2.0189 -3.1181 1.9028 19 6 1.6932 -4.4413 1.7527 20 1 1.1302 -4.7643 0.8895 21 6 2.0865 -5.3668 2.7115 22 7 1.7747 -6.6352 2.5674 23 14 3.0597 -4.8081 4.2049 24 1 2.1232 -4.4447 5.2985 25 1 3.9465 -5.9096 4.6583 26 1 3.8833 -3.6259 3.8451 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.5611 1.9274 0.8310 31 1 3.0797 1.3444 0.1083 32 1 2.0658 1.5016 -2.1491 33 1 0.5471 2.0845 -1.4264 34 1 2.6498 3.7553 -0.5510 35 1 2.5270 5.7325 -4.5399 36 1 1.0532 6.3960 -3.7925 37 1 2.5528 8.1922 -4.6870 38 1 2.3307 8.3172 -2.9242 39 1 4.7032 7.0328 -4.3540 40 1 4.7131 8.5947 -3.4999 41 1 4.2814 5.1436 -1.2786 42 1 4.4504 5.0001 -3.0449 43 1 3.0798 -0.6611 1.1756 44 1 1.5612 -0.3872 2.0628 45 1 2.5243 -2.8280 2.6782 46 1 2.0490 -7.2812 3.2371 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492213548.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:47 Heat of formation + Delta-G solvation = -112.328301 kcal Electronic energy + Delta-G solvation = -25678.736725 eV Core-core repulsion = 21796.552873 eV Total energy + Delta-G solvation = -3882.183852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.68952 -39.08796 -38.72377 -36.95045 -34.82995 -34.03499 -33.88507 -32.02432 -31.68904 -29.51428 -27.86853 -25.79160 -25.33132 -24.71383 -23.53566 -21.37676 -21.31923 -20.17874 -19.37665 -18.29358 -17.69030 -16.81130 -16.69590 -16.13676 -16.02495 -15.83446 -15.39749 -15.09878 -14.95314 -14.59779 -14.35382 -14.11354 -13.84117 -13.62981 -13.39790 -13.12386 -13.09222 -12.91868 -12.45684 -12.12711 -12.06928 -11.88179 -11.60819 -11.55879 -11.42333 -11.40595 -11.15308 -11.06573 -10.90708 -10.61236 -10.23823 -9.98876 -9.91533 -9.55515 -9.30925 -8.62579 -8.20075 -8.03826 -6.32111 -3.83655 2.31241 2.74772 3.00856 3.04959 3.13721 3.33893 3.71456 3.95584 4.08913 4.12099 4.31424 4.33132 4.44062 4.60124 4.68724 4.73493 4.83419 4.88641 4.96190 5.08161 5.18026 5.18847 5.27838 5.28880 5.36864 5.45670 5.47474 5.57057 5.64530 5.73371 5.78200 5.78979 5.82638 5.88391 5.93814 6.13820 6.47592 6.62265 7.04646 7.16758 7.20977 7.56951 7.91456 8.13342 8.58836 8.94161 9.41040 9.81777 10.80948 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.032127 B = 0.001983 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.319882 B =14116.503498 C =14695.435216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.120 3.880 5 N -0.729 5.729 6 C 0.518 3.482 7 O -0.532 6.532 8 C -0.143 4.143 9 H 0.106 0.894 10 C -0.103 4.103 11 C -0.156 4.156 12 C 0.056 3.944 13 O -0.377 6.377 14 C 0.072 3.928 15 C 0.044 3.956 16 C 0.452 3.548 17 O -0.558 6.558 18 N -0.591 5.591 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.269 1.269 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.016 0.984 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.399 0.601 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.050 0.950 45 H 0.370 0.630 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.232 29.965 -5.054 30.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.239 5.239 3 C -0.084 4.084 4 C -0.004 4.004 5 N -0.381 5.381 6 C 0.304 3.696 7 O -0.408 6.408 8 C -0.165 4.165 9 H 0.124 0.876 10 C -0.141 4.141 11 C -0.194 4.194 12 C -0.021 4.021 13 O -0.296 6.296 14 C -0.006 4.006 15 C -0.087 4.087 16 C 0.238 3.762 17 O -0.439 6.439 18 N -0.230 5.230 19 C -0.433 4.433 20 H 0.138 0.862 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.035 0.965 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.233 0.767 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.077 0.923 43 H 0.108 0.892 44 H 0.068 0.932 45 H 0.203 0.797 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.607 29.010 -6.619 30.110 hybrid contribution 0.576 0.637 2.290 2.446 sum 5.183 29.647 -4.329 30.406 Atomic orbital electron populations 1.22647 0.86273 1.04885 0.99277 1.61435 1.09102 1.10536 1.42855 1.22258 1.00751 0.89693 0.95745 1.21362 0.99719 0.80613 0.98656 1.46000 1.57932 1.14510 1.19681 1.20391 0.79919 0.86891 0.82423 1.90737 1.40585 1.75385 1.34092 1.22032 0.98474 0.94101 1.01913 0.87586 1.21414 1.02024 0.95002 0.95690 1.22230 0.96470 0.97547 1.03162 1.22664 0.95048 0.97712 0.86634 1.87961 1.77360 1.26980 1.37254 1.22516 0.90300 0.84711 1.03042 1.21903 1.00798 0.94092 0.91919 1.19602 0.85234 0.86405 0.85004 1.90538 1.42615 1.79904 1.30862 1.42206 1.50902 1.08382 1.21543 1.19427 1.33708 0.80377 1.09802 0.86244 1.25041 0.97887 0.95133 0.98132 1.69622 1.45769 1.01134 1.35565 0.86671 0.80476 0.78852 0.83369 1.19683 1.20172 1.19502 0.91693 0.88286 0.96511 0.94496 0.90230 0.90119 0.91056 0.76689 0.90769 0.90557 0.90297 0.90867 0.92861 0.88578 0.88294 0.92303 0.89173 0.93212 0.79744 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.96 60.07 0.54 0.80 16 2 N -0.52 -7.87 4.50 -244.36 -1.10 -8.97 16 3 C 0.04 0.48 5.07 -3.83 -0.02 0.46 16 4 C 0.12 1.32 5.60 -4.04 -0.02 1.30 16 5 N -0.73 -6.17 5.46 -60.30 -0.33 -6.50 16 6 C 0.52 5.23 7.16 -10.98 -0.08 5.15 16 7 O -0.53 -7.70 15.97 5.56 0.09 -7.61 16 8 C -0.14 -1.03 2.72 -91.63 -0.25 -1.28 16 9 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 10 C -0.10 -0.77 4.62 -26.55 -0.12 -0.89 16 11 C -0.16 -0.85 6.14 -26.60 -0.16 -1.01 16 12 C 0.06 0.32 6.84 37.20 0.25 0.58 16 13 O -0.38 -2.90 10.76 -35.23 -0.38 -3.28 16 14 C 0.07 0.47 6.01 37.21 0.22 0.69 16 15 C 0.04 0.71 5.45 -4.98 -0.03 0.68 16 16 C 0.45 10.06 7.47 -10.99 -0.08 9.98 16 17 O -0.56 -14.68 13.91 5.55 0.08 -14.60 16 18 N -0.59 -13.84 5.09 -10.97 -0.06 -13.90 16 19 C -0.30 -8.53 10.16 -14.94 -0.15 -8.68 16 20 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.61 13.96 55.50 0.77 -24.83 16 23 Si 0.88 19.12 27.74 -169.99 -4.71 14.41 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 26 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 27 H 0.06 0.91 6.47 -51.93 -0.34 0.57 16 28 H 0.10 1.89 5.83 -51.93 -0.30 1.59 16 29 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.04 0.35 8.12 -51.92 -0.42 -0.07 16 31 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.87 6.55 -51.93 -0.34 0.53 16 34 H 0.40 2.15 7.95 -40.82 -0.32 1.83 16 35 H 0.07 0.63 8.03 -51.93 -0.42 0.21 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.39 8.14 -51.92 -0.42 -0.04 16 39 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.48 7.65 -51.93 -0.40 0.08 16 42 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 43 H 0.09 1.24 7.93 -51.93 -0.41 0.83 16 44 H 0.05 0.70 8.12 -51.93 -0.42 0.27 16 45 H 0.37 7.56 5.76 -40.82 -0.24 7.33 16 46 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -34.92 369.14 -7.45 -42.37 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -7.38 Total: 8.55 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: 0.00 Total: 8.80 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.71 Total: -54.20 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.21 Total: -25.49 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.41 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.92 -7.45 -42.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492213548.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.959 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds