Wall clock time and date at job start Fri Apr 10 2020 18:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00020 * 2 1 4 4 C 1.53006 * 109.46998 * 89.99804 * 3 2 1 5 5 N 1.46500 * 109.46998 * 180.02562 * 4 3 2 6 6 C 1.36931 * 120.00396 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99774 * 359.97438 * 6 5 4 8 8 C 1.38806 * 120.00545 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99833 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00256 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47470 * 59.99790 * 10 8 6 12 12 H 1.48499 * 109.47263 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47057 * 299.99584 * 10 8 6 14 14 C 1.34777 * 119.99857 * 179.97438 * 2 1 3 15 15 O 1.21284 * 120.00042 * 180.02562 * 14 2 1 16 16 C 1.50699 * 120.00130 * 0.02562 * 14 2 1 17 17 C 1.53007 * 109.47116 * 179.97438 * 16 14 2 18 18 C 1.52999 * 109.46877 * 179.97438 * 17 16 14 19 19 H 1.09001 * 109.86701 * 53.99709 * 18 17 16 20 20 C 1.54107 * 109.87675 * 174.99812 * 18 17 16 21 21 C 1.54808 * 104.18213 * 121.45527 * 20 18 17 22 22 C 1.54994 * 102.09554 * 20.88564 * 21 20 18 23 23 H 1.09001 * 110.61888 * 81.47526 * 22 21 20 24 24 C 1.50703 * 110.61635 * 204.47272 * 22 21 20 25 25 N 1.34772 * 120.00027 * 294.99632 * 24 22 21 26 26 O 1.21281 * 119.99862 * 114.99955 * 24 22 21 27 27 O 1.43736 * 109.88403 * 292.83324 * 18 17 16 28 28 H 1.09001 * 109.47412 * 89.99916 * 1 2 3 29 29 H 1.09000 * 109.47567 * 210.00198 * 1 2 3 30 30 H 1.09002 * 109.47279 * 329.99646 * 1 2 3 31 31 H 1.09000 * 109.47175 * 329.99936 * 3 2 1 32 32 H 1.09001 * 109.47297 * 209.99443 * 3 2 1 33 33 H 1.08993 * 109.46955 * 300.00226 * 4 3 2 34 34 H 1.09000 * 109.47050 * 60.00054 * 4 3 2 35 35 H 0.97010 * 119.99909 * 359.97438 * 5 4 3 36 36 H 0.97001 * 119.99731 * 180.02562 * 9 8 6 37 37 H 1.09005 * 109.47151 * 299.99768 * 16 14 2 38 38 H 1.08993 * 109.47232 * 59.99939 * 16 14 2 39 39 H 1.08999 * 109.47153 * 300.00435 * 17 16 14 40 40 H 1.09002 * 109.46712 * 60.00084 * 17 16 14 41 41 H 1.08997 * 110.48962 * 240.13657 * 20 18 17 42 42 H 1.09002 * 110.48212 * 2.78511 * 20 18 17 43 43 H 1.09008 * 110.90243 * 139.08287 * 21 20 18 44 44 H 1.08997 * 110.91186 * 262.64234 * 21 20 18 45 45 H 0.96997 * 120.00022 * 0.02562 * 25 24 22 46 46 H 0.97002 * 120.00272 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 1.4426 5 7 3.1844 2.9795 1.4426 6 6 3.5271 3.5723 2.6284 7 1 3.2574 3.1045 3.5637 8 6 4.2201 4.7749 2.6284 9 7 4.5484 5.3453 1.4885 10 14 4.6870 5.5839 4.2461 11 1 5.5585 4.6676 5.0245 12 1 5.4153 6.8492 3.9748 13 1 3.4575 5.8784 5.0252 14 6 2.1388 -1.1672 0.0005 15 8 3.3516 -1.1673 0.0010 16 6 1.3853 -2.4723 0.0005 17 6 2.3796 -3.6353 0.0005 18 6 1.6145 -4.9603 0.0012 19 1 0.9072 -4.9800 -0.8279 20 6 2.6028 -6.1360 -0.1252 21 6 2.3451 -6.9860 1.1427 22 6 0.9216 -6.5317 1.5545 23 1 0.1668 -7.0552 0.9678 24 6 0.6990 -6.7546 3.0283 25 7 0.6876 -8.0069 3.5262 26 8 0.5301 -5.8070 3.7662 27 8 0.9163 -5.1210 1.2472 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6084 2.0284 -0.5138 32 1 3.1499 1.1384 -0.5137 33 1 1.5000 1.8407 1.9563 34 1 3.0415 0.9508 1.9564 35 1 3.4270 3.3995 0.6024 36 1 5.0330 6.1856 1.4886 37 1 0.7583 -2.5299 0.8903 38 1 0.7590 -2.5303 -0.8896 39 1 3.0063 -3.5775 -0.8894 40 1 3.0062 -3.5775 0.8905 41 1 2.3921 -6.7166 -1.0232 42 1 3.6299 -5.7712 -0.1377 43 1 2.3609 -8.0502 0.9073 44 1 3.0697 -6.7513 1.9224 45 1 0.8231 -8.7647 2.9361 46 1 0.5447 -8.1504 4.4748 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493635250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:58 Heat of formation + Delta-G solvation = -144.369829 kcal Electronic energy + Delta-G solvation = -25907.434494 eV Core-core repulsion = 22023.861217 eV Total energy + Delta-G solvation = -3883.573277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.35721 -40.89196 -39.44421 -37.45337 -36.08504 -34.92957 -34.56304 -33.39683 -32.91247 -30.59739 -29.38194 -27.51083 -26.42222 -25.18909 -23.65712 -22.83897 -21.86705 -21.53703 -20.16508 -19.22230 -18.65724 -18.14134 -17.84651 -17.41181 -17.31377 -16.80345 -16.57076 -16.23626 -15.73161 -15.52358 -15.34921 -15.28175 -15.11504 -14.43947 -14.36768 -14.31712 -14.07796 -13.68979 -13.32152 -13.10162 -13.00319 -12.86993 -12.85161 -12.75692 -12.60003 -12.36895 -12.19940 -12.04317 -11.90610 -11.87155 -11.57124 -11.05182 -11.01499 -10.82367 -10.72184 -10.58474 -9.69940 -9.11147 -8.01106 -5.32536 1.43042 1.47843 1.53934 1.54368 1.62474 2.00305 2.18718 2.53238 3.08052 3.31203 3.46381 3.61057 3.78656 3.90217 3.98445 4.02622 4.08636 4.13197 4.19173 4.21760 4.30949 4.36040 4.43442 4.52453 4.60141 4.68997 4.72131 4.77205 4.90383 4.94879 4.97724 5.04534 5.05840 5.09592 5.15400 5.31873 5.38781 5.52970 5.80138 5.95613 6.20234 6.41826 6.45780 7.18210 7.26135 7.32452 7.96707 8.23777 9.21971 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.016934 B = 0.002338 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.129246 B =11974.443492 C =12774.749263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.614 5.614 3 C 0.122 3.878 4 C 0.149 3.851 5 N -0.742 5.742 6 C -0.256 4.256 7 H 0.070 0.930 8 C -0.073 4.073 9 N -0.967 5.967 10 Si 0.980 3.020 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.499 3.501 15 O -0.591 6.591 16 C -0.123 4.123 17 C -0.102 4.102 18 C 0.075 3.925 19 H 0.103 0.897 20 C -0.149 4.149 21 C -0.138 4.138 22 C 0.054 3.946 23 H 0.135 0.865 24 C 0.513 3.487 25 N -0.828 5.828 26 O -0.589 6.589 27 O -0.380 6.380 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.027 0.973 34 H -0.006 1.006 35 H 0.376 0.624 36 H 0.255 0.745 37 H 0.100 0.900 38 H 0.129 0.871 39 H 0.085 0.915 40 H 0.041 0.959 41 H 0.114 0.886 42 H 0.074 0.926 43 H 0.129 0.871 44 H 0.060 0.940 45 H 0.422 0.578 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.423 -34.785 -7.525 38.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.347 5.347 3 C -0.002 4.002 4 C 0.021 3.979 5 N -0.385 5.385 6 C -0.387 4.387 7 H 0.088 0.912 8 C -0.265 4.265 9 N -0.616 5.616 10 Si 0.808 3.192 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C 0.289 3.711 15 O -0.471 6.471 16 C -0.162 4.162 17 C -0.140 4.140 18 C 0.018 3.982 19 H 0.121 0.879 20 C -0.186 4.186 21 C -0.176 4.176 22 C -0.007 4.007 23 H 0.152 0.848 24 C 0.298 3.702 25 N -0.394 5.394 26 O -0.468 6.468 27 O -0.299 6.299 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.012 0.988 35 H 0.209 0.791 36 H 0.064 0.936 37 H 0.118 0.882 38 H 0.146 0.854 39 H 0.104 0.896 40 H 0.060 0.940 41 H 0.132 0.868 42 H 0.093 0.907 43 H 0.148 0.852 44 H 0.079 0.921 45 H 0.254 0.746 46 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -13.001 -33.888 -6.926 36.951 hybrid contribution 0.820 0.700 0.901 1.405 sum -12.181 -33.188 -6.025 35.862 Atomic orbital electron populations 1.22128 0.76555 1.04562 1.03810 1.47977 1.08798 1.05006 1.72879 1.21317 0.97438 0.85563 0.95894 1.20946 0.94104 0.86757 0.96125 1.42373 1.67640 1.22897 1.05636 1.19545 1.29559 1.02774 0.86868 0.91221 1.25657 1.01446 0.98683 1.00719 1.69814 1.45814 1.19872 1.26140 0.85124 0.78073 0.77340 0.78674 1.20720 1.21355 1.19918 1.21638 0.87835 0.86897 0.74702 1.90690 1.16532 1.88162 1.51737 1.21677 0.99202 0.89218 1.06118 1.21545 0.97128 0.92641 1.02668 1.23012 0.93893 0.94559 0.86747 0.87942 1.23049 1.00242 0.95811 0.99537 1.23141 0.93537 1.03124 0.97758 1.23251 1.00743 0.84661 0.92020 0.84821 1.20811 0.75138 0.83495 0.90746 1.43561 1.74636 1.07042 1.14171 1.90791 1.50520 1.43621 1.61897 1.89025 1.76899 1.23139 1.40855 0.89696 0.89009 0.90771 0.88532 0.92203 0.95471 0.98803 0.79135 0.93643 0.88192 0.85351 0.89624 0.93975 0.86799 0.90695 0.85244 0.92075 0.74629 0.75854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.38 10.24 127.77 1.31 2.69 16 2 N -0.61 -18.65 2.87 -846.75 -2.43 -21.08 16 3 C 0.12 4.61 5.52 86.38 0.48 5.08 16 4 C 0.15 6.98 6.58 86.38 0.57 7.55 16 5 N -0.74 -41.96 5.60 -343.46 -1.92 -43.89 16 6 C -0.26 -15.63 9.99 84.03 0.84 -14.79 16 7 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 8 C -0.07 -4.42 5.50 84.86 0.47 -3.95 16 9 N -0.97 -61.77 13.06 21.65 0.28 -61.49 16 10 Si 0.98 48.65 29.55 68.60 2.03 50.68 16 11 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 12 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 13 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 14 C 0.50 16.20 7.67 87.66 0.67 16.87 16 15 O -0.59 -25.25 15.56 -3.04 -0.05 -25.30 16 16 C -0.12 -2.68 4.17 29.85 0.12 -2.55 16 17 C -0.10 -2.21 3.99 30.60 0.12 -2.08 16 18 C 0.08 1.08 3.41 30.97 0.11 1.19 16 19 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 20 C -0.15 -1.35 6.64 31.59 0.21 -1.14 16 21 C -0.14 -1.08 6.57 31.89 0.21 -0.87 16 22 C 0.05 0.66 3.76 30.53 0.11 0.78 16 23 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 24 C 0.51 9.02 7.48 87.66 0.66 9.67 16 25 N -0.83 -5.44 8.86 -173.54 -1.54 -6.97 16 26 O -0.59 -18.43 17.40 15.20 0.26 -18.17 16 27 O -0.38 -7.87 10.12 -130.75 -1.32 -9.19 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.09 1.44 6.44 -2.39 -0.02 1.43 16 30 H 0.07 1.50 8.07 -2.39 -0.02 1.48 16 31 H 0.10 3.24 8.07 -2.39 -0.02 3.22 16 32 H 0.06 2.56 7.42 -2.39 -0.02 2.54 16 33 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 34 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 35 H 0.38 22.00 7.67 -92.70 -0.71 21.29 16 36 H 0.25 15.62 8.31 -92.71 -0.77 14.85 16 37 H 0.10 2.25 7.17 -2.38 -0.02 2.23 16 38 H 0.13 1.79 8.11 -2.39 -0.02 1.77 16 39 H 0.09 1.79 8.10 -2.39 -0.02 1.77 16 40 H 0.04 1.22 8.10 -2.39 -0.02 1.20 16 41 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.07 0.89 7.70 -2.39 -0.02 0.87 16 43 H 0.13 -0.09 8.14 -2.38 -0.02 -0.10 16 44 H 0.06 0.77 8.05 -2.39 -0.02 0.75 16 45 H 0.42 -0.84 8.83 -92.71 -0.82 -1.66 16 46 H 0.41 2.48 8.93 -92.71 -0.83 1.65 16 Total: -1.00 -94.06 381.67 -0.17 -94.23 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -1.35 Total: 22.74 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 5.87 Total: 18.45 kcal Atomic # 7 Polarization: -127.82 SS G_CDS: -5.61 Total: -133.43 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: -1.11 Total: -52.66 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.03 Total: 50.68 kcal Total: -94.06 -0.17 -94.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493635250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.141 kcal (2) G-P(sol) polarization free energy of solvation -94.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds