Wall clock time and date at job start Fri Apr 10 2020 18:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.53000 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47227 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00041 * 0.02562 * 5 4 3 7 7 N 1.34773 * 119.99993 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00283 * 0.02562 * 7 5 4 9 9 C 1.46500 * 120.00038 * 179.97438 * 7 5 4 10 10 H 1.08996 * 110.28624 * 0.68309 * 9 7 5 11 11 C 1.54263 * 110.32835 * 238.55231 * 9 7 5 12 12 C 1.54375 * 105.06112 * 241.10689 * 11 9 7 13 13 N 1.48558 * 104.59684 * 23.84879 * 12 11 9 14 14 C 1.46904 * 111.00591 * 200.96144 * 13 12 11 15 15 C 1.50703 * 109.46588 * 290.13061 * 14 13 12 16 16 O 1.21288 * 120.00657 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99471 * 179.97438 * 15 14 13 18 18 C 1.37098 * 120.00140 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99361 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00253 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00023 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99714 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47404 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47047 * 120.00477 * 22 20 18 25 25 H 1.48504 * 109.47288 * 240.00173 * 22 20 18 26 26 C 1.48567 * 104.22406 * 320.52011 * 13 12 11 27 27 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 28 28 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 30 30 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 31 31 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 32 32 H 1.09000 * 109.46916 * 299.99948 * 4 3 2 33 33 H 1.09003 * 109.47336 * 59.99762 * 4 3 2 34 34 H 1.08999 * 109.47257 * 89.99176 * 8 7 5 35 35 H 1.08994 * 109.47422 * 209.99419 * 8 7 5 36 36 H 1.09007 * 109.46930 * 329.99778 * 8 7 5 37 37 H 1.08997 * 110.32028 * 359.97438 * 11 9 7 38 38 H 1.08993 * 110.32140 * 122.20895 * 11 9 7 39 39 H 1.08996 * 110.41800 * 142.63042 * 12 11 9 40 40 H 1.09005 * 110.41038 * 264.95699 * 12 11 9 41 41 H 1.08997 * 109.46844 * 50.12270 * 14 13 12 42 42 H 1.08993 * 109.47364 * 170.12538 * 14 13 12 43 43 H 0.96997 * 120.00273 * 359.97438 * 17 15 14 44 44 H 0.97000 * 119.99780 * 180.02562 * 21 20 18 45 45 H 1.08997 * 110.40680 * 280.69994 * 26 13 12 46 46 H 1.08994 * 110.41210 * 158.26094 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1484 2.5613 0.0000 6 8 3.4356 3.5425 -0.0004 7 7 5.4888 2.7022 0.0009 8 6 6.3499 1.5170 0.0020 9 6 6.0847 4.0405 -0.0002 10 1 5.3045 4.8016 0.0103 11 6 6.9931 4.2216 -1.2338 12 6 8.4013 4.4870 -0.6595 13 7 8.3727 3.8815 0.6968 14 6 9.4196 4.4561 1.5522 15 6 10.7710 3.9937 1.0714 16 8 10.8538 3.2576 0.1110 17 7 11.8876 4.3983 1.7087 18 6 13.1169 3.9773 1.2717 19 1 13.1906 3.3211 0.4170 20 6 14.2681 4.3948 1.9284 21 7 14.1785 5.1928 2.9686 22 14 15.9431 3.8205 1.3333 23 1 15.7724 2.9346 0.1538 24 1 16.7637 4.9983 0.9527 25 1 16.6249 3.0726 2.4201 26 6 7.0203 4.2119 1.2157 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 1.6887 1.8463 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 3.8567 0.6439 0.8909 33 1 3.8575 0.6435 -0.8891 34 1 6.5641 1.2226 -1.0254 35 1 7.2831 1.7464 0.5163 36 1 5.8431 0.7001 0.5158 37 1 6.9960 3.3145 -1.8382 38 1 6.6599 5.0726 -1.8277 39 1 9.1602 4.0045 -1.2752 40 1 8.5898 5.5587 -0.5953 41 1 9.3702 5.5440 1.5058 42 1 9.2685 4.1291 2.5809 43 1 11.8214 4.9873 2.4765 44 1 14.9822 5.4845 3.4267 45 1 6.9921 5.2405 1.5752 46 1 6.7396 3.5222 2.0116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494799683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:03 Heat of formation + Delta-G solvation = -101.843728 kcal Electronic energy + Delta-G solvation = -26242.396786 eV Core-core repulsion = 22360.667579 eV Total energy + Delta-G solvation = -3881.729207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.47869 -38.97959 -38.07769 -37.49585 -35.12223 -33.88667 -32.39250 -31.36582 -30.89435 -28.65460 -27.16625 -27.01007 -26.15334 -24.36632 -23.74727 -21.23667 -20.87845 -19.20671 -19.00060 -17.91976 -17.67457 -16.71879 -16.64781 -16.06390 -15.94538 -15.50418 -15.29151 -15.11740 -14.64811 -14.50208 -14.08642 -13.80082 -13.75260 -13.46068 -13.02849 -12.74127 -12.55137 -12.38409 -12.10939 -11.98315 -11.92164 -11.83154 -11.66827 -11.52692 -11.48650 -11.44420 -11.14246 -10.91690 -10.69547 -10.35518 -10.23840 -10.00872 -9.93794 -9.51676 -8.84196 -8.47623 -8.07144 -7.96412 -6.43104 -3.83876 2.42885 2.69720 3.15066 3.25800 3.32695 3.53524 3.88889 4.01289 4.24933 4.40531 4.59095 4.66631 4.72440 4.80300 5.00593 5.01695 5.04314 5.11119 5.19316 5.24710 5.27334 5.31908 5.34464 5.41042 5.47793 5.50157 5.56968 5.67643 5.75246 5.77715 5.81694 5.90216 6.00417 6.15817 6.25067 6.40041 6.44920 6.78044 7.03307 7.14674 7.27973 7.53986 7.97930 8.04928 8.60243 9.16923 9.53230 10.04758 10.74736 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.034384 B = 0.002180 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.132072 B =12841.988070 C =13089.587472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.076 3.924 4 C -0.138 4.138 5 C 0.518 3.482 6 O -0.551 6.551 7 N -0.598 5.598 8 C 0.068 3.932 9 C 0.138 3.862 10 H 0.106 0.894 11 C -0.133 4.133 12 C 0.037 3.963 13 N -0.484 5.484 14 C 0.034 3.966 15 C 0.446 3.554 16 O -0.578 6.578 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.104 0.896 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.019 3.981 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.040 0.960 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.053 0.947 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.879 -4.833 -3.541 22.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.001 4.001 4 C -0.178 4.178 5 C 0.306 3.694 6 O -0.430 6.430 7 N -0.331 5.331 8 C -0.075 4.075 9 C 0.034 3.966 10 H 0.123 0.877 11 C -0.172 4.172 12 C -0.090 4.090 13 N -0.208 5.208 14 C -0.098 4.098 15 C 0.231 3.769 16 O -0.462 6.462 17 N -0.202 5.202 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.110 4.110 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.107 0.893 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.803 -5.487 -4.079 22.849 hybrid contribution 0.700 1.236 0.424 1.482 sum -21.103 -4.251 -3.655 21.835 Atomic orbital electron populations 1.22733 0.80628 1.02734 1.00190 1.87806 1.20040 1.28076 1.95566 1.22174 0.92050 0.84137 1.01694 1.21499 0.95168 0.95419 1.05728 1.20411 0.82120 0.90997 0.75843 1.90684 1.60711 1.40854 1.50719 1.47868 1.05323 1.07522 1.72338 1.21997 0.96732 0.86236 1.02502 1.21837 0.95404 0.84469 0.94926 0.87652 1.22728 0.94762 1.02593 0.97152 1.23167 0.97069 0.97491 0.91312 1.65165 1.00330 1.53264 1.02004 1.22066 0.92335 0.97466 0.97931 1.19674 0.84842 0.85859 0.86548 1.90498 1.86649 1.39759 1.29300 1.41872 1.05046 1.44103 1.29188 1.19740 0.81843 1.27457 1.13690 0.87865 1.25261 1.00006 0.96755 0.95983 1.69619 1.30192 1.34293 1.20226 0.85807 0.81392 0.78436 0.78740 1.19230 1.20802 1.20759 1.23530 0.89978 1.00238 0.97282 0.93957 0.89537 0.93970 0.92451 0.92427 0.87884 0.87966 0.92521 0.87905 0.91437 0.90338 0.90865 0.88020 0.94188 0.93133 0.89304 0.77530 0.91939 0.92872 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.40 -3.83 10.70 -35.23 -0.38 -4.21 16 3 C 0.08 0.72 5.23 37.16 0.19 0.92 16 4 C -0.14 -1.23 4.62 -27.88 -0.13 -1.36 16 5 C 0.52 6.02 7.67 -10.99 -0.08 5.93 16 6 O -0.55 -8.09 15.34 5.56 0.09 -8.00 16 7 N -0.60 -6.71 2.74 -172.35 -0.47 -7.18 16 8 C 0.07 0.68 9.30 59.85 0.56 1.24 16 9 C 0.14 1.65 3.47 -66.55 -0.23 1.42 16 10 H 0.11 1.33 6.96 -51.93 -0.36 0.96 16 11 C -0.13 -1.62 6.48 -25.35 -0.16 -1.78 16 12 C 0.04 0.56 5.80 -2.19 -0.01 0.55 16 13 N -0.48 -7.45 3.94 -231.41 -0.91 -8.37 16 14 C 0.03 0.58 5.30 -4.97 -0.03 0.55 16 15 C 0.45 10.16 7.58 -10.98 -0.08 10.08 16 16 O -0.58 -14.98 14.42 5.55 0.08 -14.90 16 17 N -0.57 -14.04 5.29 -10.96 -0.06 -14.10 16 18 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 19 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.33 13.05 55.50 0.72 -23.60 16 22 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.02 0.23 5.42 -2.18 -0.01 0.22 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 31 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 32 H 0.10 0.80 7.40 -51.93 -0.38 0.42 16 33 H 0.10 0.80 8.11 -51.93 -0.42 0.38 16 34 H 0.06 0.54 7.91 -51.93 -0.41 0.13 16 35 H 0.10 1.27 6.27 -51.93 -0.33 0.94 16 36 H 0.07 0.53 6.44 -51.93 -0.33 0.19 16 37 H 0.08 0.96 7.24 -51.93 -0.38 0.58 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 1.82 6.91 -51.93 -0.36 1.46 16 40 H 0.04 0.59 7.83 -51.93 -0.41 0.18 16 41 H 0.05 0.80 7.88 -51.93 -0.41 0.39 16 42 H 0.09 1.39 8.13 -51.93 -0.42 0.96 16 43 H 0.39 9.35 7.90 -40.82 -0.32 9.02 16 44 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 45 H 0.05 0.62 8.00 -51.93 -0.42 0.21 16 46 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 LS Contribution 372.65 15.07 5.62 5.62 Total: -1.00 -32.13 372.65 -6.86 -38.99 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -7.41 Total: 8.67 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 0.88 Total: 11.26 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.72 Total: -53.25 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.21 Total: -27.11 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.13 -6.86 -38.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494799683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.849 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds