Wall clock time and date at job start Fri Apr 10 2020 18:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.53000 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47227 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00041 * 0.02562 * 5 4 3 7 7 N 1.34773 * 119.99993 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00283 * 0.02562 * 7 5 4 9 9 C 1.46500 * 120.00038 * 179.97438 * 7 5 4 10 10 H 1.08996 * 110.28624 * 0.68309 * 9 7 5 11 11 C 1.54263 * 110.32835 * 238.55231 * 9 7 5 12 12 C 1.54375 * 105.06112 * 241.10689 * 11 9 7 13 13 N 1.48558 * 104.59684 * 23.84879 * 12 11 9 14 14 C 1.46904 * 111.00591 * 200.96144 * 13 12 11 15 15 C 1.50703 * 109.46588 * 290.13061 * 14 13 12 16 16 O 1.21288 * 120.00657 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99471 * 179.97438 * 15 14 13 18 18 C 1.37098 * 120.00140 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99361 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00253 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00023 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99714 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47404 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47047 * 120.00477 * 22 20 18 25 25 H 1.48504 * 109.47288 * 240.00173 * 22 20 18 26 26 C 1.48567 * 104.22406 * 320.52011 * 13 12 11 27 27 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 28 28 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 30 30 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 31 31 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 32 32 H 1.09000 * 109.46916 * 299.99948 * 4 3 2 33 33 H 1.09003 * 109.47336 * 59.99762 * 4 3 2 34 34 H 1.08999 * 109.47257 * 89.99176 * 8 7 5 35 35 H 1.08994 * 109.47422 * 209.99419 * 8 7 5 36 36 H 1.09007 * 109.46930 * 329.99778 * 8 7 5 37 37 H 1.08997 * 110.32028 * 359.97438 * 11 9 7 38 38 H 1.08993 * 110.32140 * 122.20895 * 11 9 7 39 39 H 1.08996 * 110.41800 * 142.63042 * 12 11 9 40 40 H 1.09005 * 110.41038 * 264.95699 * 12 11 9 41 41 H 1.08997 * 109.46844 * 50.12270 * 14 13 12 42 42 H 1.08993 * 109.47364 * 170.12538 * 14 13 12 43 43 H 0.96997 * 120.00273 * 359.97438 * 17 15 14 44 44 H 0.97000 * 119.99780 * 180.02562 * 21 20 18 45 45 H 1.08997 * 110.40680 * 280.69994 * 26 13 12 46 46 H 1.08994 * 110.41210 * 158.26094 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1484 2.5613 0.0000 6 8 3.4356 3.5425 -0.0004 7 7 5.4888 2.7022 0.0009 8 6 6.3499 1.5170 0.0020 9 6 6.0847 4.0405 -0.0002 10 1 5.3045 4.8016 0.0103 11 6 6.9931 4.2216 -1.2338 12 6 8.4013 4.4870 -0.6595 13 7 8.3727 3.8815 0.6968 14 6 9.4196 4.4561 1.5522 15 6 10.7710 3.9937 1.0714 16 8 10.8538 3.2576 0.1110 17 7 11.8876 4.3983 1.7087 18 6 13.1169 3.9773 1.2717 19 1 13.1906 3.3211 0.4170 20 6 14.2681 4.3948 1.9284 21 7 14.1785 5.1928 2.9686 22 14 15.9431 3.8205 1.3333 23 1 15.7724 2.9346 0.1538 24 1 16.7637 4.9983 0.9527 25 1 16.6249 3.0726 2.4201 26 6 7.0203 4.2119 1.2157 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 1.6887 1.8463 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 3.8567 0.6439 0.8909 33 1 3.8575 0.6435 -0.8891 34 1 6.5641 1.2226 -1.0254 35 1 7.2831 1.7464 0.5163 36 1 5.8431 0.7001 0.5158 37 1 6.9960 3.3145 -1.8382 38 1 6.6599 5.0726 -1.8277 39 1 9.1602 4.0045 -1.2752 40 1 8.5898 5.5587 -0.5953 41 1 9.3702 5.5440 1.5058 42 1 9.2685 4.1291 2.5809 43 1 11.8214 4.9873 2.4765 44 1 14.9822 5.4845 3.4267 45 1 6.9921 5.2405 1.5752 46 1 6.7396 3.5222 2.0116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494799683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:03 Heat of formation + Delta-G solvation = -125.389530 kcal Electronic energy + Delta-G solvation = -26243.417808 eV Core-core repulsion = 22360.667579 eV Total energy + Delta-G solvation = -3882.750230 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.45717 -40.35613 -39.19976 -38.58465 -36.25851 -35.76974 -33.41929 -33.13241 -32.04606 -29.69763 -28.46867 -27.68581 -27.21550 -26.00157 -24.62623 -22.47448 -21.83253 -20.93376 -19.93338 -19.85282 -18.56904 -17.76599 -17.56613 -17.38183 -16.96066 -16.64179 -16.32731 -16.19953 -15.96797 -15.84693 -15.53422 -15.35145 -14.79285 -14.48141 -14.14459 -14.00166 -13.70477 -13.51296 -13.26142 -13.15556 -13.03544 -12.94036 -12.83621 -12.67502 -12.63397 -12.38362 -12.36957 -12.14675 -12.11017 -12.09765 -11.81651 -11.46125 -10.88724 -10.66997 -10.32332 -9.98663 -9.69456 -9.36515 -8.45179 -5.93312 1.37234 1.42528 1.53929 1.56393 1.85973 2.08227 2.29264 2.81191 2.84805 3.21874 3.39121 3.52798 3.68308 3.78385 4.01664 4.07657 4.14071 4.25167 4.30434 4.35304 4.41896 4.45906 4.52492 4.52819 4.54349 4.56097 4.67803 4.72525 4.77288 4.81788 4.83624 4.86383 4.90633 5.07864 5.13923 5.19275 5.42794 5.52531 5.83403 5.87707 6.07875 6.14778 6.39277 6.62547 7.08561 7.15242 7.59165 8.14775 8.72531 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.034384 B = 0.002180 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.132072 B =12841.988070 C =13089.587472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.079 3.921 4 C -0.132 4.132 5 C 0.518 3.482 6 O -0.584 6.584 7 N -0.597 5.597 8 C 0.070 3.930 9 C 0.141 3.859 10 H 0.104 0.896 11 C -0.122 4.122 12 C 0.039 3.961 13 N -0.496 5.496 14 C 0.046 3.954 15 C 0.445 3.555 16 O -0.612 6.612 17 N -0.577 5.577 18 C -0.329 4.329 19 H 0.079 0.921 20 C -0.015 4.015 21 N -0.922 5.922 22 Si 0.992 3.008 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.272 1.272 26 C 0.026 3.974 27 H 0.048 0.952 28 H 0.102 0.898 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.109 0.891 43 H 0.395 0.605 44 H 0.276 0.724 45 H 0.067 0.933 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.815 -5.244 -3.177 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.002 3.998 4 C -0.171 4.171 5 C 0.308 3.692 6 O -0.465 6.465 7 N -0.329 5.329 8 C -0.072 4.072 9 C 0.036 3.964 10 H 0.122 0.878 11 C -0.161 4.161 12 C -0.089 4.089 13 N -0.221 5.221 14 C -0.086 4.086 15 C 0.232 3.768 16 O -0.498 6.498 17 N -0.214 5.214 18 C -0.458 4.458 19 H 0.097 0.903 20 C -0.214 4.214 21 N -0.563 5.563 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.198 1.198 25 H -0.197 1.197 26 C -0.103 4.103 27 H 0.066 0.934 28 H 0.120 0.880 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.127 0.873 43 H 0.229 0.771 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.752 -5.900 -3.701 23.794 hybrid contribution 0.914 1.338 0.286 1.646 sum -21.838 -4.562 -3.414 22.569 Atomic orbital electron populations 1.22940 0.79254 1.04027 1.00798 1.87775 1.21633 1.27985 1.95635 1.22103 0.92468 0.84141 1.01089 1.21483 0.94648 0.93837 1.07140 1.20825 0.81866 0.91628 0.74896 1.90671 1.61382 1.42171 1.52319 1.47919 1.05481 1.07534 1.71930 1.22018 0.95860 0.86430 1.02872 1.21749 0.95087 0.85080 0.94459 0.87816 1.22632 0.92952 1.03197 0.97277 1.23049 0.97792 0.97081 0.90975 1.65116 1.01291 1.53645 1.02022 1.21928 0.89331 0.98451 0.98854 1.20686 0.86375 0.84361 0.85380 1.90477 1.87570 1.41042 1.30712 1.41944 1.05065 1.44731 1.29708 1.19682 0.83662 1.28519 1.13976 0.90254 1.26016 1.02940 0.96532 0.95917 1.69679 1.31343 1.34603 1.20690 0.84885 0.77197 0.78154 0.78192 1.19745 1.19780 1.19721 1.23530 0.88016 1.01197 0.97526 0.93368 0.87964 0.93377 0.93129 0.93062 0.86291 0.86508 0.92077 0.90098 0.88874 0.90501 0.89302 0.91550 0.93922 0.91256 0.87261 0.77129 0.91418 0.91509 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.28 10.70 -148.98 -1.59 -8.88 16 3 C 0.08 1.39 5.23 71.98 0.38 1.77 16 4 C -0.13 -2.07 4.62 29.85 0.14 -1.93 16 5 C 0.52 11.17 7.67 87.66 0.67 11.84 16 6 O -0.58 -16.53 15.34 -3.03 -0.05 -16.58 16 7 N -0.60 -12.35 2.74 -817.60 -2.24 -14.59 16 8 C 0.07 1.28 9.30 127.77 1.19 2.47 16 9 C 0.14 3.14 3.47 45.89 0.16 3.30 16 10 H 0.10 2.43 6.96 -2.39 -0.02 2.42 16 11 C -0.12 -2.81 6.48 31.49 0.20 -2.61 16 12 C 0.04 1.16 5.80 86.45 0.50 1.66 16 13 N -0.50 -14.83 3.94 -886.05 -3.49 -18.32 16 14 C 0.05 1.52 5.30 85.56 0.45 1.97 16 15 C 0.44 20.52 7.58 87.66 0.66 21.18 16 16 O -0.61 -32.61 14.42 -3.06 -0.04 -32.65 16 17 N -0.58 -29.10 5.29 -306.98 -1.62 -30.72 16 18 C -0.33 -18.44 9.68 84.04 0.81 -17.62 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 20 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 21 N -0.92 -49.49 13.05 21.66 0.28 -49.21 16 22 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 26 C 0.03 0.59 5.42 86.45 0.47 1.06 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 0.50 8.14 -2.38 -0.02 0.49 16 30 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 31 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 32 H 0.12 1.51 7.40 -2.39 -0.02 1.50 16 33 H 0.12 1.52 8.11 -2.39 -0.02 1.51 16 34 H 0.06 1.07 7.91 -2.39 -0.02 1.05 16 35 H 0.08 1.90 6.27 -2.39 -0.01 1.89 16 36 H 0.09 1.21 6.44 -2.38 -0.02 1.19 16 37 H 0.08 1.81 7.24 -2.39 -0.02 1.79 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.07 2.45 6.91 -2.39 -0.02 2.44 16 40 H 0.04 1.22 7.83 -2.38 -0.02 1.21 16 41 H 0.07 2.06 7.88 -2.39 -0.02 2.04 16 42 H 0.11 3.20 8.13 -2.39 -0.02 3.18 16 43 H 0.40 19.02 7.90 -92.71 -0.73 18.28 16 44 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 45 H 0.07 1.39 8.00 -2.39 -0.02 1.37 16 46 H 0.09 2.02 8.04 -2.39 -0.02 2.00 16 Total: -1.00 -69.85 372.65 0.88 -68.97 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: 0.25 Total: 32.92 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: 7.36 Total: 24.35 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -7.07 Total: -112.84 kcal Atomic # 8 Polarization: -56.43 SS G_CDS: -1.68 Total: -58.11 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -69.85 0.88 -68.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494799683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.416 kcal (2) G-P(sol) polarization free energy of solvation -69.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds