Wall clock time and date at job start Fri Apr 10 2020 18:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.46977 * 2 1 4 4 C 1.52999 * 109.47565 * 239.99488 * 2 1 3 5 5 N 1.46500 * 109.47022 * 65.00398 * 4 2 1 6 6 C 1.36930 * 120.00123 * 179.72901 * 5 4 2 7 7 H 1.07998 * 119.99896 * 0.26926 * 6 5 4 8 8 C 1.38820 * 120.00075 * 180.27300 * 6 5 4 9 9 N 1.31613 * 119.99803 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99971 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47194 * 59.99992 * 10 8 6 12 12 H 1.48499 * 109.47185 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47414 * 300.00128 * 10 8 6 14 14 C 1.53007 * 109.47080 * 119.99397 * 2 1 3 15 15 N 1.46500 * 109.47114 * 295.00465 * 14 2 1 16 16 C 1.34772 * 119.99873 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00216 * 0.02562 * 16 15 14 18 18 C 1.50705 * 120.00126 * 179.97438 * 16 15 14 19 19 H 1.09004 * 109.46725 * 60.00578 * 18 16 15 20 20 C 1.52995 * 109.47209 * 300.00329 * 18 16 15 21 21 C 1.52998 * 109.47132 * 180.02562 * 18 16 15 22 22 N 1.46900 * 109.47206 * 185.06377 * 21 18 16 23 23 C 1.47016 * 111.00186 * 199.38911 * 22 21 18 24 24 C 1.53093 * 109.25708 * 177.60482 * 23 22 21 25 25 O 1.43024 * 109.25906 * 56.84351 * 24 23 22 26 26 C 1.43009 * 113.73864 * 301.32937 * 25 24 23 27 27 C 1.47014 * 111.00267 * 75.74646 * 22 21 18 28 28 H 1.09002 * 109.46977 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47625 * 300.00156 * 1 2 3 30 30 H 1.09004 * 109.47211 * 60.00607 * 1 2 3 31 31 H 1.08994 * 109.47371 * 305.00280 * 4 2 1 32 32 H 1.09007 * 109.47003 * 184.99987 * 4 2 1 33 33 H 0.97003 * 119.99629 * 359.97438 * 5 4 2 34 34 H 0.97001 * 119.99637 * 180.02562 * 9 8 6 35 35 H 1.09007 * 109.46473 * 55.00558 * 14 2 1 36 36 H 1.08997 * 109.47231 * 175.00146 * 14 2 1 37 37 H 0.97002 * 120.00253 * 359.97438 * 15 14 2 38 38 H 1.08994 * 109.47313 * 304.87209 * 20 18 16 39 39 H 1.09002 * 109.46858 * 64.86813 * 20 18 16 40 40 H 1.08998 * 109.47375 * 184.86849 * 20 18 16 41 41 H 1.08999 * 109.47112 * 305.06359 * 21 18 16 42 42 H 1.09003 * 109.47166 * 65.06588 * 21 18 16 43 43 H 1.09002 * 109.50078 * 297.53777 * 23 22 21 44 44 H 1.08997 * 109.50894 * 57.66813 * 23 22 21 45 45 H 1.09002 * 109.51136 * 296.91065 * 24 23 22 46 46 H 1.09000 * 109.54064 * 176.79758 * 24 23 22 47 47 H 1.09001 * 109.50874 * 298.73265 * 26 25 24 48 48 H 1.09001 * 109.53807 * 178.62534 * 26 25 24 49 49 H 1.09001 * 109.50672 * 302.33426 * 27 22 21 50 50 H 1.08997 * 109.50363 * 62.45734 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.6526 0.0352 -2.4423 6 6 2.0065 -0.4178 -3.6851 7 1 2.5676 -1.3351 -3.7859 8 6 1.6443 0.3021 -4.8155 9 7 0.9602 1.4197 -4.6926 10 14 2.1277 -0.3155 -6.5108 11 1 1.5355 -1.6587 -6.7358 12 1 1.6242 0.6261 -7.5428 13 1 3.6072 -0.4054 -6.6016 14 6 2.0399 -0.7212 1.2494 15 7 1.6523 0.0355 2.4424 16 6 1.9954 -0.4133 3.6660 17 8 2.6254 -1.4434 3.7795 18 6 1.5971 0.3653 4.8933 19 1 0.5108 0.4442 4.9369 20 6 2.2081 1.7665 4.8289 21 6 2.1070 -0.3559 6.1426 22 7 1.6165 0.3360 7.3420 23 6 2.4229 -0.0154 8.5199 24 6 1.9164 0.7713 9.7316 25 8 0.5263 0.4960 9.9253 26 6 -0.2887 0.8270 8.7977 27 6 0.1955 0.0409 7.5765 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.6055 -1.7198 -1.2951 32 1 3.1264 -0.7995 -1.2054 33 1 1.1484 0.8589 -2.3518 34 1 0.7068 1.9225 -5.4825 35 1 1.6053 -1.7198 1.2952 36 1 3.1262 -0.7994 1.2058 37 1 1.1487 0.8596 2.3517 38 1 3.2872 1.6867 4.6983 39 1 1.7796 2.3113 3.9876 40 1 1.9926 2.2998 5.7547 41 1 1.7443 -1.3838 6.1422 42 1 3.1970 -0.3553 6.1431 43 1 2.3337 -1.0839 8.7164 44 1 3.4673 0.2351 8.3340 45 1 2.0551 1.8382 9.5569 46 1 2.4737 0.4723 10.6194 47 1 -0.2140 1.8955 8.5958 48 1 -1.3262 0.5682 9.0092 49 1 -0.3860 0.3325 6.7019 50 1 0.0707 -1.0267 7.7578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495809373.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:08 Heat of formation + Delta-G solvation = -80.379043 kcal Electronic energy + Delta-G solvation = -26205.445550 eV Core-core repulsion = 22460.480216 eV Total energy + Delta-G solvation = -3744.965334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.37386 -39.60976 -37.07534 -36.37779 -34.41011 -33.48757 -32.29585 -31.60502 -30.02613 -28.30242 -26.61847 -25.67230 -25.15649 -24.46550 -23.00098 -21.96618 -20.79436 -20.32327 -19.54098 -17.65057 -17.05367 -16.58739 -16.38940 -16.18945 -15.84193 -15.49062 -15.33053 -15.16315 -14.57115 -14.46059 -14.30499 -13.76229 -13.59256 -13.52239 -13.09341 -12.99867 -12.72860 -12.48076 -12.34816 -12.26042 -12.07929 -11.95781 -11.80276 -11.56761 -11.16916 -11.07468 -10.93392 -10.91095 -10.70938 -10.58333 -10.43376 -10.10991 -10.09767 -9.79688 -9.64176 -9.04196 -8.88147 -8.82238 -6.93423 -5.77894 -3.06264 2.58323 2.96508 3.41232 3.43948 3.48147 3.49210 3.55190 4.33311 4.46796 4.50075 4.58511 4.62081 4.71515 4.73133 4.80640 4.88514 4.99257 5.06418 5.15141 5.20264 5.22113 5.34392 5.35803 5.36927 5.40807 5.43276 5.56762 5.57475 5.62082 5.72903 5.79775 5.94195 5.97460 5.99463 6.10191 6.23049 6.37454 6.47583 6.50220 6.50866 6.63472 6.70650 6.75833 6.85396 7.46497 7.69215 8.16959 8.41278 9.52466 10.09700 10.44597 11.45027 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.042822 B = 0.001849 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.712175 B =15138.755642 C =15359.318484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.730 5.730 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.126 3.874 15 N -0.722 5.722 16 C 0.515 3.485 17 O -0.546 6.546 18 C -0.105 4.105 19 H 0.095 0.905 20 C -0.136 4.136 21 C 0.075 3.925 22 N -0.536 5.536 23 C 0.018 3.982 24 C 0.064 3.936 25 O -0.387 6.387 26 C 0.064 3.936 27 C 0.014 3.986 28 H 0.052 0.948 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.022 0.978 32 H 0.021 0.979 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.400 0.600 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.048 0.952 42 H 0.082 0.918 43 H 0.044 0.956 44 H 0.088 0.912 45 H 0.060 0.940 46 H 0.097 0.903 47 H 0.060 0.940 48 H 0.097 0.903 49 H 0.087 0.913 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.241 1.319 29.418 29.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.002 3.998 15 N -0.374 5.374 16 C 0.300 3.700 17 O -0.424 6.424 18 C -0.126 4.126 19 H 0.113 0.887 20 C -0.193 4.193 21 C -0.053 4.053 22 N -0.261 5.261 23 C -0.110 4.110 24 C -0.013 4.013 25 O -0.306 6.306 26 C -0.013 4.013 27 C -0.115 4.115 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.062 0.938 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.115 0.885 47 H 0.078 0.922 48 H 0.115 0.885 49 H 0.105 0.895 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.744 0.896 29.437 29.461 hybrid contribution -0.138 -0.438 -1.312 1.390 sum -0.882 0.458 28.126 28.143 Atomic orbital electron populations 1.21787 0.94690 1.01903 1.01466 1.21549 0.96686 1.00492 0.94198 0.90540 1.20576 0.96598 0.94211 0.85403 1.42327 1.66797 1.27802 1.00588 1.19196 1.28779 1.05411 0.83709 0.91211 1.24737 1.01026 0.97391 0.97872 1.69644 1.43547 1.16513 1.28625 0.86248 0.78039 0.77685 0.84097 1.21276 1.21690 1.21268 1.21419 1.00109 0.95242 0.82998 1.46068 1.57552 1.27821 1.05925 1.20567 0.79306 0.85412 0.84714 1.90702 1.40126 1.24714 1.86842 1.21223 1.02258 0.96833 0.92320 0.88697 1.21682 1.00850 0.93790 1.03022 1.21865 1.00722 0.95199 0.87550 1.62121 1.02403 1.58335 1.03208 1.22789 0.98501 0.98893 0.90818 1.22672 0.82075 0.99271 0.97274 1.87992 1.18055 1.86137 1.38380 1.22664 0.94739 0.98900 0.84985 1.22866 0.89874 0.99188 0.99538 0.92857 0.93948 0.91136 0.96029 0.96153 0.78210 0.93480 0.91431 0.91402 0.76479 0.92433 0.92453 0.90283 0.93363 0.89926 0.93790 0.89406 0.92168 0.88464 0.92151 0.88455 0.89451 0.93752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.94 37.15 0.33 -1.71 16 2 C -0.11 -1.67 2.46 -90.62 -0.22 -1.89 16 3 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.16 3.17 5.65 -4.04 -0.02 3.15 16 5 N -0.73 -18.24 5.33 -59.91 -0.32 -18.56 16 6 C -0.24 -6.71 9.99 -15.06 -0.15 -6.87 16 7 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16 10 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 C 0.13 1.71 5.06 -4.04 -0.02 1.69 16 15 N -0.72 -8.13 5.19 -60.29 -0.31 -8.45 16 16 C 0.51 6.18 7.15 -10.98 -0.08 6.10 16 17 O -0.55 -8.71 15.92 5.56 0.09 -8.62 16 18 C -0.10 -0.90 2.78 -91.77 -0.26 -1.15 16 19 H 0.10 0.69 6.75 -51.93 -0.35 0.34 16 20 C -0.14 -1.01 9.00 37.16 0.33 -0.68 16 21 C 0.07 0.67 3.74 -3.83 -0.01 0.65 16 22 N -0.54 -4.05 4.03 -234.31 -0.95 -5.00 16 23 C 0.02 0.13 5.60 -3.71 -0.02 0.10 16 24 C 0.06 0.41 7.01 37.21 0.26 0.67 16 25 O -0.39 -3.28 10.83 -35.23 -0.38 -3.67 16 26 C 0.06 0.42 7.01 37.21 0.26 0.68 16 27 C 0.01 0.09 5.47 -3.71 -0.02 0.07 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 30 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.38 9.94 6.85 -40.82 -0.28 9.66 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.40 3.65 7.17 -40.82 -0.29 3.36 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.38 7.70 -51.93 -0.40 -0.02 16 40 H 0.08 0.56 7.62 -51.93 -0.40 0.16 16 41 H 0.05 0.51 7.80 -51.93 -0.41 0.10 16 42 H 0.08 0.80 7.86 -51.93 -0.41 0.39 16 43 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.53 8.02 -51.93 -0.42 0.11 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.09 0.52 6.74 -51.93 -0.35 0.17 16 50 H 0.04 0.35 8.13 -51.93 -0.42 -0.07 16 LS Contribution 393.44 15.07 5.93 5.93 Total: -1.00 -32.89 393.44 -9.04 -41.93 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -9.09 Total: 6.02 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 0.29 Total: 0.32 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -0.85 Total: -59.32 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.29 Total: -12.28 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.89 -9.04 -41.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495809373.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.450 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds