Wall clock time and date at job start Fri Apr 10 2020 18:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.46977 * 2 1 4 4 C 1.52999 * 109.47565 * 239.99488 * 2 1 3 5 5 N 1.46500 * 109.47022 * 65.00398 * 4 2 1 6 6 C 1.36930 * 120.00123 * 179.72901 * 5 4 2 7 7 H 1.07998 * 119.99896 * 0.26926 * 6 5 4 8 8 C 1.38820 * 120.00075 * 180.27300 * 6 5 4 9 9 N 1.31613 * 119.99803 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99971 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47194 * 59.99992 * 10 8 6 12 12 H 1.48499 * 109.47185 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47414 * 300.00128 * 10 8 6 14 14 C 1.53007 * 109.47080 * 119.99397 * 2 1 3 15 15 N 1.46500 * 109.47114 * 295.00465 * 14 2 1 16 16 C 1.34772 * 119.99873 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00216 * 0.02562 * 16 15 14 18 18 C 1.50705 * 120.00126 * 179.97438 * 16 15 14 19 19 H 1.09004 * 109.46725 * 60.00578 * 18 16 15 20 20 C 1.52995 * 109.47209 * 300.00329 * 18 16 15 21 21 C 1.52998 * 109.47132 * 180.02562 * 18 16 15 22 22 N 1.46900 * 109.47206 * 185.06377 * 21 18 16 23 23 C 1.47016 * 111.00186 * 199.38911 * 22 21 18 24 24 C 1.53093 * 109.25708 * 177.60482 * 23 22 21 25 25 O 1.43024 * 109.25906 * 56.84351 * 24 23 22 26 26 C 1.43009 * 113.73864 * 301.32937 * 25 24 23 27 27 C 1.47014 * 111.00267 * 75.74646 * 22 21 18 28 28 H 1.09002 * 109.46977 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47625 * 300.00156 * 1 2 3 30 30 H 1.09004 * 109.47211 * 60.00607 * 1 2 3 31 31 H 1.08994 * 109.47371 * 305.00280 * 4 2 1 32 32 H 1.09007 * 109.47003 * 184.99987 * 4 2 1 33 33 H 0.97003 * 119.99629 * 359.97438 * 5 4 2 34 34 H 0.97001 * 119.99637 * 180.02562 * 9 8 6 35 35 H 1.09007 * 109.46473 * 55.00558 * 14 2 1 36 36 H 1.08997 * 109.47231 * 175.00146 * 14 2 1 37 37 H 0.97002 * 120.00253 * 359.97438 * 15 14 2 38 38 H 1.08994 * 109.47313 * 304.87209 * 20 18 16 39 39 H 1.09002 * 109.46858 * 64.86813 * 20 18 16 40 40 H 1.08998 * 109.47375 * 184.86849 * 20 18 16 41 41 H 1.08999 * 109.47112 * 305.06359 * 21 18 16 42 42 H 1.09003 * 109.47166 * 65.06588 * 21 18 16 43 43 H 1.09002 * 109.50078 * 297.53777 * 23 22 21 44 44 H 1.08997 * 109.50894 * 57.66813 * 23 22 21 45 45 H 1.09002 * 109.51136 * 296.91065 * 24 23 22 46 46 H 1.09000 * 109.54064 * 176.79758 * 24 23 22 47 47 H 1.09001 * 109.50874 * 298.73265 * 26 25 24 48 48 H 1.09001 * 109.53807 * 178.62534 * 26 25 24 49 49 H 1.09001 * 109.50672 * 302.33426 * 27 22 21 50 50 H 1.08997 * 109.50363 * 62.45734 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.6526 0.0352 -2.4423 6 6 2.0065 -0.4178 -3.6851 7 1 2.5676 -1.3351 -3.7859 8 6 1.6443 0.3021 -4.8155 9 7 0.9602 1.4197 -4.6926 10 14 2.1277 -0.3155 -6.5108 11 1 1.5355 -1.6587 -6.7358 12 1 1.6242 0.6261 -7.5428 13 1 3.6072 -0.4054 -6.6016 14 6 2.0399 -0.7212 1.2494 15 7 1.6523 0.0355 2.4424 16 6 1.9954 -0.4133 3.6660 17 8 2.6254 -1.4434 3.7795 18 6 1.5971 0.3653 4.8933 19 1 0.5108 0.4442 4.9369 20 6 2.2081 1.7665 4.8289 21 6 2.1070 -0.3559 6.1426 22 7 1.6165 0.3360 7.3420 23 6 2.4229 -0.0154 8.5199 24 6 1.9164 0.7713 9.7316 25 8 0.5263 0.4960 9.9253 26 6 -0.2887 0.8270 8.7977 27 6 0.1955 0.0409 7.5765 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.6055 -1.7198 -1.2951 32 1 3.1264 -0.7995 -1.2054 33 1 1.1484 0.8589 -2.3518 34 1 0.7068 1.9225 -5.4825 35 1 1.6053 -1.7198 1.2952 36 1 3.1262 -0.7994 1.2058 37 1 1.1487 0.8596 2.3517 38 1 3.2872 1.6867 4.6983 39 1 1.7796 2.3113 3.9876 40 1 1.9926 2.2998 5.7547 41 1 1.7443 -1.3838 6.1422 42 1 3.1970 -0.3553 6.1431 43 1 2.3337 -1.0839 8.7164 44 1 3.4673 0.2351 8.3340 45 1 2.0551 1.8382 9.5569 46 1 2.4737 0.4723 10.6194 47 1 -0.2140 1.8955 8.5958 48 1 -1.3262 0.5682 9.0092 49 1 -0.3860 0.3325 6.7019 50 1 0.0707 -1.0267 7.7578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495809373.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:08 Heat of formation + Delta-G solvation = -104.424303 kcal Electronic energy + Delta-G solvation = -26206.488231 eV Core-core repulsion = 22460.480216 eV Total energy + Delta-G solvation = -3746.008015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.21353 -40.32996 -38.33826 -37.17059 -35.96521 -34.48026 -33.67537 -32.12379 -31.80516 -28.94241 -27.79424 -27.13747 -26.06944 -24.99499 -24.54831 -23.08587 -21.57149 -21.32745 -20.61860 -19.19044 -18.28417 -17.38098 -17.11872 -17.07217 -16.71820 -16.54124 -16.22125 -15.97835 -15.83221 -15.51529 -15.41436 -15.20626 -14.83943 -14.56194 -14.16301 -14.06936 -13.70985 -13.59133 -13.55346 -13.13260 -12.99859 -12.95950 -12.77677 -12.55337 -12.31030 -12.25158 -12.21938 -12.13799 -11.99533 -11.80407 -11.70667 -11.65300 -11.46801 -10.93945 -10.79649 -10.63449 -10.09200 -9.45362 -8.99770 -7.95664 -5.23887 1.47489 1.50127 1.56300 1.62798 2.08413 2.56235 2.79391 2.99381 3.37756 3.65649 3.72294 3.79108 3.93683 3.96297 4.00207 4.05089 4.09115 4.21264 4.27535 4.33055 4.34487 4.41186 4.54485 4.61452 4.66533 4.70931 4.74658 4.75965 4.78863 4.83937 4.91906 4.93535 5.02314 5.03573 5.04375 5.09742 5.12526 5.33377 5.40965 5.41920 5.48836 5.49843 5.86636 5.92047 6.20389 6.26923 6.54979 7.23653 7.33857 8.08989 8.33600 9.27448 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.042822 B = 0.001849 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.712175 B =15138.755642 C =15359.318484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.079 0.921 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.249 4.249 7 H 0.073 0.927 8 C -0.073 4.073 9 N -0.967 5.967 10 Si 0.973 3.027 11 H -0.279 1.279 12 H -0.294 1.294 13 H -0.279 1.279 14 C 0.138 3.862 15 N -0.712 5.712 16 C 0.514 3.486 17 O -0.589 6.589 18 C -0.093 4.093 19 H 0.116 0.884 20 C -0.130 4.130 21 C 0.080 3.920 22 N -0.531 5.531 23 C 0.016 3.984 24 C 0.065 3.935 25 O -0.409 6.409 26 C 0.063 3.937 27 C 0.013 3.987 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.020 0.980 32 H 0.018 0.982 33 H 0.377 0.623 34 H 0.252 0.748 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.414 0.586 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.028 0.972 42 H 0.072 0.928 43 H 0.032 0.968 44 H 0.096 0.904 45 H 0.067 0.933 46 H 0.111 0.889 47 H 0.068 0.932 48 H 0.110 0.890 49 H 0.101 0.899 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.605 1.985 30.414 30.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.098 0.902 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.381 4.381 7 H 0.091 0.909 8 C -0.266 4.266 9 N -0.617 5.617 10 Si 0.802 3.198 11 H -0.205 1.205 12 H -0.220 1.220 13 H -0.205 1.205 14 C 0.013 3.987 15 N -0.364 5.364 16 C 0.301 3.699 17 O -0.469 6.469 18 C -0.115 4.115 19 H 0.134 0.866 20 C -0.187 4.187 21 C -0.048 4.048 22 N -0.256 5.256 23 C -0.112 4.112 24 C -0.012 4.012 25 O -0.328 6.328 26 C -0.013 4.013 27 C -0.115 4.115 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.210 0.790 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.252 0.748 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.046 0.954 42 H 0.090 0.910 43 H 0.050 0.950 44 H 0.114 0.886 45 H 0.085 0.915 46 H 0.129 0.871 47 H 0.086 0.914 48 H 0.128 0.872 49 H 0.119 0.881 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.110 1.563 30.462 30.523 hybrid contribution -0.004 -0.688 -1.551 1.696 sum -1.114 0.875 28.912 28.947 Atomic orbital electron populations 1.21723 0.93827 1.01876 1.01822 1.21324 0.97186 1.00046 0.92679 0.90247 1.20730 0.96466 0.94142 0.85774 1.42489 1.66671 1.27940 1.01310 1.19591 1.28050 1.05326 0.85147 0.90944 1.25541 1.01680 0.97872 1.01499 1.69791 1.44984 1.17715 1.29221 0.85221 0.77878 0.77160 0.79546 1.20524 1.21959 1.20517 1.21112 0.99384 0.95003 0.83169 1.45918 1.57357 1.28025 1.05066 1.21165 0.78279 0.84935 0.85528 1.90690 1.42079 1.26752 1.87410 1.21187 1.03483 0.96723 0.90108 0.86574 1.21656 1.00125 0.92895 1.04050 1.21739 1.00072 0.94412 0.88571 1.62167 1.02861 1.57660 1.02886 1.22848 0.99034 0.98354 0.90931 1.22772 0.81434 0.99502 0.97505 1.87965 1.19020 1.86417 1.39380 1.22782 0.95177 0.99178 0.84203 1.22930 0.89583 0.98584 1.00452 0.93090 0.90414 0.93874 0.96208 0.96380 0.79035 0.93930 0.92032 0.92370 0.74834 0.93506 0.91141 0.89414 0.95354 0.90983 0.94984 0.88557 0.91518 0.87110 0.91412 0.87153 0.88127 0.95064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 8.94 71.98 0.64 -3.07 16 2 C -0.09 -2.73 2.46 -10.79 -0.03 -2.75 16 3 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 4 C 0.16 6.14 5.65 86.38 0.49 6.63 16 5 N -0.74 -37.16 5.33 -343.45 -1.83 -38.99 16 6 C -0.25 -13.98 9.99 84.04 0.84 -13.14 16 7 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 8 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 9 N -0.97 -58.46 13.06 21.65 0.28 -58.17 16 10 Si 0.97 46.09 29.55 68.60 2.03 48.11 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 14 C 0.14 3.59 5.06 86.38 0.44 4.03 16 15 N -0.71 -14.60 5.19 -463.04 -2.40 -17.00 16 16 C 0.51 11.64 7.15 87.66 0.63 12.27 16 17 O -0.59 -18.65 15.92 -3.03 -0.05 -18.70 16 18 C -0.09 -1.42 2.78 -11.54 -0.03 -1.45 16 19 H 0.12 1.32 6.75 -2.38 -0.02 1.30 16 20 C -0.13 -1.61 9.00 71.98 0.65 -0.96 16 21 C 0.08 1.38 3.74 86.30 0.32 1.70 16 22 N -0.53 -7.31 4.03 -895.23 -3.61 -10.92 16 23 C 0.02 0.21 5.60 86.31 0.48 0.70 16 24 C 0.06 0.74 7.01 72.01 0.50 1.24 16 25 O -0.41 -6.39 10.83 -148.98 -1.61 -8.00 16 26 C 0.06 0.71 7.01 72.01 0.50 1.22 16 27 C 0.01 0.16 5.47 86.31 0.47 0.63 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.57 7.18 -2.39 -0.02 1.55 16 30 H 0.04 1.44 7.18 -2.39 -0.02 1.42 16 31 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.38 19.74 6.85 -92.71 -0.63 19.10 16 34 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.41 6.26 7.17 -92.71 -0.66 5.60 16 38 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.07 0.71 7.70 -2.39 -0.02 0.69 16 40 H 0.09 0.98 7.62 -2.39 -0.02 0.97 16 41 H 0.03 0.60 7.80 -2.39 -0.02 0.58 16 42 H 0.07 1.38 7.86 -2.39 -0.02 1.36 16 43 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.10 1.06 8.02 -2.39 -0.02 1.04 16 45 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16 49 H 0.10 0.96 6.74 -2.39 -0.02 0.94 16 50 H 0.03 0.47 8.13 -2.39 -0.02 0.45 16 Total: -1.00 -70.84 393.44 -1.20 -72.04 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -0.38 Total: 28.33 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 6.38 Total: 3.30 kcal Atomic # 7 Polarization: -117.53 SS G_CDS: -7.56 Total: -125.09 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -1.66 Total: -26.70 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -70.84 -1.20 -72.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495809373.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.385 kcal (2) G-P(sol) polarization free energy of solvation -70.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds