Wall clock time and date at job start Fri Apr 10 2020 18:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00082 * 2 1 4 4 C 1.53003 * 109.47151 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47093 * 65.00203 * 4 3 2 6 6 C 1.34774 * 120.00174 * 180.02562 * 5 4 3 7 7 O 1.21285 * 119.99859 * 354.95436 * 6 5 4 8 8 C 1.50695 * 120.00375 * 174.96082 * 6 5 4 9 9 N 1.46497 * 115.55872 * 350.12618 * 8 6 5 10 10 C 1.34781 * 120.00106 * 270.01356 * 9 8 6 11 11 O 1.21279 * 119.99627 * 5.02439 * 10 9 8 12 12 C 1.50695 * 119.99950 * 185.02015 * 10 9 8 13 13 H 1.09003 * 109.47430 * 40.00625 * 12 10 9 14 14 N 1.46904 * 109.47131 * 160.00014 * 12 10 9 15 15 C 1.52998 * 109.47363 * 279.99990 * 12 10 9 16 16 C 1.53002 * 109.47116 * 175.00225 * 15 12 10 17 17 C 1.50707 * 109.47094 * 180.02562 * 16 15 12 18 18 H 1.08006 * 119.99531 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00034 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00163 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99836 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47428 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47121 * 120.00412 * 21 19 17 24 24 H 1.48502 * 109.47298 * 239.99867 * 21 19 17 25 25 C 1.52996 * 117.50086 * 204.43756 * 8 6 5 26 26 C 1.52999 * 117.50094 * 135.81136 * 8 6 5 27 27 H 1.09000 * 109.46776 * 59.99573 * 1 2 3 28 28 H 1.08999 * 109.46939 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47135 * 299.99850 * 1 2 3 30 30 H 1.09001 * 109.47084 * 60.00149 * 3 2 1 31 31 H 1.08995 * 109.47363 * 299.99925 * 3 2 1 32 32 H 1.09007 * 109.47170 * 305.00380 * 4 3 2 33 33 H 1.08996 * 109.47586 * 185.00231 * 4 3 2 34 34 H 0.96997 * 119.99789 * 0.02562 * 5 4 3 35 35 H 0.97005 * 120.00257 * 90.01793 * 9 8 6 36 36 H 1.00900 * 111.00153 * 296.04918 * 14 12 10 37 37 H 1.00901 * 110.99671 * 60.00003 * 14 12 10 38 38 H 1.08999 * 109.47258 * 295.00187 * 15 12 10 39 39 H 1.08996 * 109.46888 * 55.00185 * 15 12 10 40 40 H 1.09003 * 109.47397 * 299.99785 * 16 15 12 41 41 H 1.08996 * 109.47275 * 60.00197 * 16 15 12 42 42 H 0.97001 * 119.99711 * 179.97438 * 20 19 17 43 43 H 1.09000 * 117.50190 * 145.01951 * 25 8 6 44 44 H 1.09002 * 117.50149 * 0.02562 * 25 8 6 45 45 H 1.08999 * 117.49811 * 0.02562 * 26 8 6 46 46 H 1.08998 * 117.51862 * 214.97302 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 5.2882 0.3556 -1.4764 7 8 6.1108 0.7630 -0.6836 8 6 5.7339 -0.3839 -2.7114 9 7 4.6670 -1.0261 -3.4831 10 6 4.3065 -2.2953 -3.2078 11 8 4.8003 -2.8747 -2.2637 12 6 3.2896 -2.9942 -4.0729 13 1 3.4657 -2.7400 -5.1182 14 7 3.4117 -4.4474 -3.8953 15 6 1.8831 -2.5475 -3.6692 16 6 0.8590 -3.1598 -4.6269 17 6 -0.5264 -2.7193 -4.2296 18 1 -0.6626 -2.0673 -3.3793 19 6 -1.6197 -3.1476 -4.9521 20 7 -1.4537 -3.9402 -5.9884 21 14 -3.3368 -2.6009 -4.4600 22 1 -3.2529 -1.7168 -3.2699 23 1 -3.9612 -1.8585 -5.5845 24 1 -4.1616 -3.7923 -4.1350 25 6 7.0918 -1.0872 -2.6623 26 6 6.9208 0.1892 -3.4883 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 3.8515 0.5681 0.8409 33 1 3.9786 2.1764 0.0890 34 1 3.3225 0.3041 -1.9209 35 1 4.2201 -0.5380 -4.1923 36 1 4.3100 -4.7767 -4.2157 37 1 3.2527 -4.7087 -2.9338 38 1 1.6741 -2.8801 -2.6525 39 1 1.8198 -1.4604 -3.7161 40 1 1.0680 -2.8272 -5.6436 41 1 0.9223 -4.2469 -4.5800 42 1 -2.2229 -4.2418 -6.4964 43 1 7.1914 -2.0278 -3.2041 44 1 7.6626 -1.0154 -1.7365 45 1 7.3796 1.1010 -3.1059 46 1 6.9083 0.0885 -4.5736 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579037604.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:27 Heat of formation + Delta-G solvation = -101.040389 kcal Electronic energy + Delta-G solvation = -27319.111413 eV Core-core repulsion = 23437.417041 eV Total energy + Delta-G solvation = -3881.694372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.71452 -39.29059 -38.08609 -36.76351 -35.16224 -34.88820 -32.89018 -32.70202 -30.13384 -30.05781 -26.66907 -26.34341 -24.75335 -23.60052 -22.84733 -22.20764 -20.91997 -19.97963 -19.67867 -18.21373 -17.10840 -16.83414 -16.61558 -16.24163 -15.84110 -15.48701 -15.27290 -15.08200 -14.94026 -14.56570 -14.34069 -14.19009 -14.00551 -13.48183 -13.23628 -13.04683 -12.37057 -12.36131 -12.06725 -11.87076 -11.74120 -11.59226 -11.37973 -11.30027 -10.96201 -10.73559 -10.61068 -10.58821 -10.50154 -10.13637 -9.83693 -9.81601 -9.41219 -9.19953 -9.13194 -9.02312 -8.39560 -8.24679 -5.97798 -3.99745 2.29930 2.67557 2.89831 3.02129 3.29196 3.37199 3.38916 3.61489 3.67990 4.44089 4.45998 4.55877 4.63191 4.71455 4.83670 4.91723 5.05067 5.09379 5.29835 5.33260 5.34780 5.38052 5.39408 5.41482 5.48639 5.65808 5.69765 5.78476 5.83272 5.88243 6.22807 6.32313 6.38687 6.62857 7.01702 7.04517 7.29116 7.38598 7.50603 7.72250 7.75728 7.92538 8.06814 8.09618 8.25592 8.44470 9.08373 9.63345 11.13217 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011598 B = 0.004392 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.713362 B = 6373.999674 C = 8208.946137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.046 3.954 4 C 0.123 3.877 5 N -0.714 5.714 6 C 0.552 3.448 7 O -0.544 6.544 8 C 0.058 3.942 9 N -0.705 5.705 10 C 0.486 3.514 11 O -0.534 6.534 12 C 0.080 3.920 13 H 0.099 0.901 14 N -0.806 5.806 15 C -0.093 4.093 16 C 0.031 3.969 17 C -0.519 4.519 18 H 0.052 0.948 19 C 0.058 3.942 20 N -0.892 5.892 21 Si 0.887 3.113 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.284 1.284 25 C -0.122 4.122 26 C -0.146 4.146 27 H 0.046 0.954 28 H 0.093 0.907 29 H 0.038 0.962 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.407 0.593 35 H 0.407 0.593 36 H 0.334 0.666 37 H 0.349 0.651 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.012 0.988 41 H 0.035 0.965 42 H 0.259 0.741 43 H 0.105 0.895 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.058 11.346 6.198 17.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.031 4.031 4 C -0.001 4.001 5 N -0.366 5.366 6 C 0.337 3.663 7 O -0.422 6.422 8 C -0.034 4.034 9 N -0.360 5.360 10 C 0.272 3.728 11 O -0.409 6.409 12 C -0.036 4.036 13 H 0.117 0.883 14 N -0.333 5.333 15 C -0.131 4.131 16 C -0.006 4.006 17 C -0.558 4.558 18 H 0.070 0.930 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.715 3.285 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.211 1.211 25 C -0.160 4.160 26 C -0.185 4.185 27 H 0.065 0.935 28 H 0.111 0.889 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.242 0.758 35 H 0.243 0.757 36 H 0.146 0.854 37 H 0.163 0.837 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.031 0.969 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.123 0.877 44 H 0.130 0.870 45 H 0.129 0.871 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.353 10.853 6.843 17.810 hybrid contribution -1.127 0.896 0.213 1.456 sum 11.225 11.749 7.056 17.715 Atomic orbital electron populations 1.22809 0.80092 1.03761 0.99831 1.87983 1.20410 1.26503 1.95393 1.22784 0.92757 0.86240 1.01333 1.21397 0.92391 0.98957 0.87330 1.45739 1.07617 1.62593 1.20654 1.19582 0.82415 0.78379 0.85933 1.90690 1.52743 1.51674 1.47064 1.20538 0.85302 1.03120 0.94438 1.45613 1.37696 1.14633 1.38068 1.22959 0.82881 0.81139 0.85857 1.90684 1.55359 1.65614 1.29277 1.21872 0.95046 0.88273 0.98418 0.88335 1.59008 1.36851 1.09283 1.28182 1.21642 0.90650 0.99224 1.01626 1.19021 0.91147 0.97474 0.92979 1.21283 0.91799 1.29437 1.13244 0.92961 1.24982 0.98904 0.95258 0.95148 1.69981 1.30118 1.34343 1.18683 0.86632 0.85107 0.78443 0.78316 1.19930 1.21159 1.21062 1.23134 0.93736 0.96427 1.02685 1.23389 0.96779 0.99143 0.99170 0.93531 0.88885 0.94328 0.91649 0.92468 0.90633 0.89912 0.75765 0.75686 0.85442 0.83720 0.92638 0.93062 0.96927 0.94683 0.93154 0.87653 0.87032 0.87095 0.87219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.20 10.65 -35.23 -0.38 -5.58 16 3 C 0.05 0.47 6.07 37.16 0.23 0.69 16 4 C 0.12 1.39 6.07 -4.04 -0.02 1.36 16 5 N -0.71 -9.11 5.46 -60.29 -0.33 -9.44 16 6 C 0.55 7.81 7.56 -10.99 -0.08 7.72 16 7 O -0.54 -8.99 16.44 5.55 0.09 -8.90 16 8 C 0.06 0.70 2.37 -132.98 -0.32 0.38 16 9 N -0.70 -8.18 4.55 -48.69 -0.22 -8.40 16 10 C 0.49 7.14 6.91 -10.99 -0.08 7.07 16 11 O -0.53 -9.52 15.62 5.56 0.09 -9.44 16 12 C 0.08 1.25 3.15 -68.87 -0.22 1.03 16 13 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 14 N -0.81 -12.99 8.44 -5.65 -0.05 -13.04 16 15 C -0.09 -1.76 4.78 -26.73 -0.13 -1.89 16 16 C 0.03 0.75 4.86 -27.88 -0.14 0.62 16 17 C -0.52 -14.02 9.11 -34.44 -0.31 -14.33 16 18 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 21 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C -0.12 -1.41 9.01 -26.73 -0.24 -1.65 16 26 C -0.15 -1.34 10.07 -26.73 -0.27 -1.61 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.41 5.06 7.67 -40.82 -0.31 4.75 16 35 H 0.41 3.79 8.83 -40.82 -0.36 3.43 16 36 H 0.33 4.66 9.06 -39.29 -0.36 4.30 16 37 H 0.35 5.82 8.58 -39.29 -0.34 5.49 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.11 1.37 7.88 -51.93 -0.41 0.96 16 45 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 391.55 15.07 5.90 5.90 Total: -1.00 -34.13 391.55 -7.38 -41.51 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -7.64 Total: 14.50 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -0.56 Total: 2.40 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.14 Total: -56.36 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.20 Total: -23.92 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.13 -7.38 -41.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579037604.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.531 kcal (2) G-P(sol) polarization free energy of solvation -34.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds