Wall clock time and date at job start Fri Apr 10 2020 18:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00082 * 2 1 4 4 C 1.53003 * 109.47151 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47093 * 65.00203 * 4 3 2 6 6 C 1.34774 * 120.00174 * 180.02562 * 5 4 3 7 7 O 1.21285 * 119.99859 * 354.95436 * 6 5 4 8 8 C 1.50695 * 120.00375 * 174.96082 * 6 5 4 9 9 N 1.46497 * 115.55872 * 350.12618 * 8 6 5 10 10 C 1.34781 * 120.00106 * 270.01356 * 9 8 6 11 11 O 1.21279 * 119.99627 * 5.02439 * 10 9 8 12 12 C 1.50695 * 119.99950 * 185.02015 * 10 9 8 13 13 H 1.09003 * 109.47430 * 40.00625 * 12 10 9 14 14 N 1.46904 * 109.47131 * 160.00014 * 12 10 9 15 15 C 1.52998 * 109.47363 * 279.99990 * 12 10 9 16 16 C 1.53002 * 109.47116 * 175.00225 * 15 12 10 17 17 C 1.50707 * 109.47094 * 180.02562 * 16 15 12 18 18 H 1.08006 * 119.99531 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00034 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00163 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99836 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47428 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47121 * 120.00412 * 21 19 17 24 24 H 1.48502 * 109.47298 * 239.99867 * 21 19 17 25 25 C 1.52996 * 117.50086 * 204.43756 * 8 6 5 26 26 C 1.52999 * 117.50094 * 135.81136 * 8 6 5 27 27 H 1.09000 * 109.46776 * 59.99573 * 1 2 3 28 28 H 1.08999 * 109.46939 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47135 * 299.99850 * 1 2 3 30 30 H 1.09001 * 109.47084 * 60.00149 * 3 2 1 31 31 H 1.08995 * 109.47363 * 299.99925 * 3 2 1 32 32 H 1.09007 * 109.47170 * 305.00380 * 4 3 2 33 33 H 1.08996 * 109.47586 * 185.00231 * 4 3 2 34 34 H 0.96997 * 119.99789 * 0.02562 * 5 4 3 35 35 H 0.97005 * 120.00257 * 90.01793 * 9 8 6 36 36 H 1.00900 * 111.00153 * 296.04918 * 14 12 10 37 37 H 1.00901 * 110.99671 * 60.00003 * 14 12 10 38 38 H 1.08999 * 109.47258 * 295.00187 * 15 12 10 39 39 H 1.08996 * 109.46888 * 55.00185 * 15 12 10 40 40 H 1.09003 * 109.47397 * 299.99785 * 16 15 12 41 41 H 1.08996 * 109.47275 * 60.00197 * 16 15 12 42 42 H 0.97001 * 119.99711 * 179.97438 * 20 19 17 43 43 H 1.09000 * 117.50190 * 145.01951 * 25 8 6 44 44 H 1.09002 * 117.50149 * 0.02562 * 25 8 6 45 45 H 1.08999 * 117.49811 * 0.02562 * 26 8 6 46 46 H 1.08998 * 117.51862 * 214.97302 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 5.2882 0.3556 -1.4764 7 8 6.1108 0.7630 -0.6836 8 6 5.7339 -0.3839 -2.7114 9 7 4.6670 -1.0261 -3.4831 10 6 4.3065 -2.2953 -3.2078 11 8 4.8003 -2.8747 -2.2637 12 6 3.2896 -2.9942 -4.0729 13 1 3.4657 -2.7400 -5.1182 14 7 3.4117 -4.4474 -3.8953 15 6 1.8831 -2.5475 -3.6692 16 6 0.8590 -3.1598 -4.6269 17 6 -0.5264 -2.7193 -4.2296 18 1 -0.6626 -2.0673 -3.3793 19 6 -1.6197 -3.1476 -4.9521 20 7 -1.4537 -3.9402 -5.9884 21 14 -3.3368 -2.6009 -4.4600 22 1 -3.2529 -1.7168 -3.2699 23 1 -3.9612 -1.8585 -5.5845 24 1 -4.1616 -3.7923 -4.1350 25 6 7.0918 -1.0872 -2.6623 26 6 6.9208 0.1892 -3.4883 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 3.8515 0.5681 0.8409 33 1 3.9786 2.1764 0.0890 34 1 3.3225 0.3041 -1.9209 35 1 4.2201 -0.5380 -4.1923 36 1 4.3100 -4.7767 -4.2157 37 1 3.2527 -4.7087 -2.9338 38 1 1.6741 -2.8801 -2.6525 39 1 1.8198 -1.4604 -3.7161 40 1 1.0680 -2.8272 -5.6436 41 1 0.9223 -4.2469 -4.5800 42 1 -2.2229 -4.2418 -6.4964 43 1 7.1914 -2.0278 -3.2041 44 1 7.6626 -1.0154 -1.7365 45 1 7.3796 1.1010 -3.1059 46 1 6.9083 0.0885 -4.5736 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579037604.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:27 Heat of formation + Delta-G solvation = -129.163782 kcal Electronic energy + Delta-G solvation = -27320.330935 eV Core-core repulsion = 23437.417041 eV Total energy + Delta-G solvation = -3882.913894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.78498 -40.46250 -39.02180 -37.79381 -36.66023 -35.93361 -34.77436 -33.79295 -31.88405 -30.98939 -28.21354 -27.33899 -26.04008 -24.98638 -23.69932 -23.16758 -22.45587 -21.28354 -20.78852 -19.24966 -18.58552 -17.98241 -17.74962 -17.54259 -17.06950 -16.63565 -16.44766 -16.27314 -16.09318 -15.97274 -15.57070 -15.34634 -15.07501 -14.92794 -14.30251 -14.16733 -14.00426 -13.77922 -13.38385 -13.18792 -12.81434 -12.75439 -12.54002 -12.50104 -12.29398 -12.21882 -12.19494 -11.71594 -11.65894 -11.57244 -11.49802 -11.19240 -10.94548 -10.70154 -10.45572 -10.23153 -10.17561 -9.60587 -8.09904 -6.18975 1.27096 1.42916 1.44386 1.48336 1.55771 1.86686 2.04969 2.47139 2.75232 2.78579 3.24124 3.47590 3.60582 3.63914 3.79634 3.86515 3.89248 4.10854 4.15566 4.34814 4.35800 4.42923 4.48361 4.53396 4.54161 4.60947 4.77223 4.81962 4.85287 4.90165 4.99671 5.08007 5.22210 5.30836 5.34419 5.62833 5.90057 6.03551 6.10763 6.16169 6.35151 6.35239 6.40527 6.54062 7.00138 7.01349 7.14634 7.48945 9.01563 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011598 B = 0.004392 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.713362 B = 6373.999674 C = 8208.946137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.415 6.415 3 C 0.048 3.952 4 C 0.120 3.880 5 N -0.712 5.712 6 C 0.544 3.456 7 O -0.575 6.575 8 C 0.039 3.961 9 N -0.684 5.684 10 C 0.495 3.505 11 O -0.566 6.566 12 C 0.088 3.912 13 H 0.116 0.884 14 N -0.818 5.818 15 C -0.077 4.077 16 C 0.039 3.961 17 C -0.534 4.534 18 H 0.058 0.942 19 C 0.002 3.998 20 N -0.931 5.931 21 Si 0.954 3.046 22 H -0.259 1.259 23 H -0.280 1.280 24 H -0.286 1.286 25 C -0.133 4.133 26 C -0.110 4.110 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.408 0.592 35 H 0.421 0.579 36 H 0.347 0.653 37 H 0.344 0.656 38 H 0.038 0.962 39 H 0.070 0.930 40 H -0.004 1.004 41 H 0.003 0.997 42 H 0.260 0.740 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.118 0.882 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.962 13.382 5.979 18.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.335 6.335 3 C -0.029 4.029 4 C -0.003 4.003 5 N -0.363 5.363 6 C 0.330 3.670 7 O -0.455 6.455 8 C -0.053 4.053 9 N -0.340 5.340 10 C 0.281 3.719 11 O -0.443 6.443 12 C -0.028 4.028 13 H 0.134 0.866 14 N -0.347 5.347 15 C -0.116 4.116 16 C 0.002 3.998 17 C -0.572 4.572 18 H 0.076 0.924 19 C -0.195 4.195 20 N -0.572 5.572 21 Si 0.779 3.221 22 H -0.183 1.183 23 H -0.206 1.206 24 H -0.212 1.212 25 C -0.172 4.172 26 C -0.148 4.148 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.244 0.756 35 H 0.260 0.740 36 H 0.160 0.840 37 H 0.157 0.843 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.014 0.986 41 H 0.021 0.979 42 H 0.069 0.931 43 H 0.123 0.877 44 H 0.117 0.883 45 H 0.136 0.864 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.250 12.930 6.605 18.996 hybrid contribution -1.070 0.262 0.293 1.140 sum 11.180 13.192 6.897 18.617 Atomic orbital electron populations 1.22837 0.79509 1.03206 1.01080 1.87934 1.21277 1.28630 1.95675 1.22915 0.91536 0.85252 1.03190 1.21513 0.93508 0.99206 0.86082 1.45820 1.07308 1.62133 1.21026 1.19958 0.82547 0.78216 0.86263 1.90669 1.53464 1.53168 1.48172 1.20602 0.85610 1.04207 0.94840 1.45345 1.37307 1.13488 1.37817 1.22567 0.82456 0.81877 0.85020 1.90684 1.56546 1.66629 1.30477 1.21689 0.93423 0.88242 0.99456 0.86635 1.58995 1.37941 1.09800 1.27926 1.21352 0.91245 0.99931 0.99038 1.18833 0.92029 0.95634 0.93329 1.21736 0.93162 1.29163 1.13158 0.92370 1.25851 1.03230 0.95325 0.95110 1.70114 1.31346 1.35751 1.19986 0.85570 0.79849 0.78105 0.78546 1.18285 1.20582 1.21179 1.23121 0.93257 0.97768 1.03018 1.23529 0.93008 0.97935 1.00292 0.93336 0.90414 0.91997 0.89175 0.91072 0.92601 0.88260 0.75615 0.73988 0.84015 0.84279 0.94306 0.91138 0.98582 0.97904 0.93124 0.87693 0.88338 0.86373 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.91 16 2 O -0.42 -10.82 10.65 -148.98 -1.59 -12.41 16 3 C 0.05 0.87 6.07 71.98 0.44 1.31 16 4 C 0.12 2.59 6.07 86.38 0.52 3.11 16 5 N -0.71 -17.38 5.46 -463.05 -2.53 -19.91 16 6 C 0.54 14.87 7.56 87.66 0.66 15.54 16 7 O -0.57 -18.77 16.44 -3.05 -0.05 -18.82 16 8 C 0.04 0.87 2.37 2.85 0.01 0.88 16 9 N -0.68 -14.48 4.55 -426.35 -1.94 -16.42 16 10 C 0.50 13.96 6.91 87.65 0.61 14.57 16 11 O -0.57 -19.93 15.62 -3.03 -0.05 -19.98 16 12 C 0.09 2.66 3.15 44.17 0.14 2.80 16 13 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 14 N -0.82 -26.34 8.44 -171.80 -1.45 -27.79 16 15 C -0.08 -2.88 4.78 30.59 0.15 -2.74 16 16 C 0.04 1.92 4.86 29.85 0.15 2.07 16 17 C -0.53 -28.81 9.11 25.60 0.23 -28.58 16 18 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 19 C 0.00 0.13 5.46 84.65 0.46 0.59 16 20 N -0.93 -55.35 13.29 21.45 0.28 -55.06 16 21 Si 0.95 42.73 29.54 68.60 2.03 44.75 16 22 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 24 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 25 C -0.13 -2.91 9.01 30.59 0.28 -2.64 16 26 C -0.11 -1.70 10.07 30.59 0.31 -1.39 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.41 9.55 7.67 -92.71 -0.71 8.84 16 35 H 0.42 6.60 8.83 -92.70 -0.82 5.79 16 36 H 0.35 9.50 9.06 -89.69 -0.81 8.68 16 37 H 0.34 11.66 8.58 -89.69 -0.77 10.89 16 38 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H 0.00 0.14 7.75 -2.39 -0.02 0.12 16 42 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 43 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.10 2.41 7.88 -2.39 -0.02 2.39 16 45 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -74.66 391.55 -2.19 -76.85 By element: Atomic # 1 Polarization: 43.44 SS G_CDS: -2.09 Total: 41.34 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 5.19 Total: 7.43 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -5.64 Total: -119.18 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -1.68 Total: -51.21 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -74.66 -2.19 -76.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579037604.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.309 kcal (2) G-P(sol) polarization free energy of solvation -74.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds