Wall clock time and date at job start Fri Apr 10 2020 18:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00317 * 2 1 4 4 C 1.52994 * 109.47515 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47488 * 64.99788 * 4 3 2 6 6 C 1.34771 * 120.00177 * 180.02562 * 5 4 3 7 7 O 1.21285 * 120.00134 * 354.97197 * 6 5 4 8 8 C 1.50696 * 119.99881 * 174.97180 * 6 5 4 9 9 N 1.46501 * 115.54863 * 298.60380 * 8 6 5 10 10 C 1.34777 * 120.00268 * 303.93894 * 9 8 6 11 11 O 1.21283 * 119.99920 * 354.99527 * 10 9 8 12 12 C 1.50703 * 120.00331 * 174.99050 * 10 9 8 13 13 H 1.09000 * 109.46864 * 320.00268 * 12 10 9 14 14 N 1.46896 * 109.47022 * 200.00151 * 12 10 9 15 15 C 1.53002 * 109.46648 * 80.00242 * 12 10 9 16 16 C 1.53003 * 109.46569 * 184.99993 * 15 12 10 17 17 C 1.50703 * 109.46938 * 179.97438 * 16 15 12 18 18 H 1.08004 * 119.99860 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99850 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00159 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99726 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47468 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47177 * 120.00111 * 21 19 17 24 24 H 1.48495 * 109.47398 * 239.99900 * 21 19 17 25 25 C 1.53000 * 117.50043 * 152.90075 * 8 6 5 26 26 C 1.53000 * 117.50415 * 84.27555 * 8 6 5 27 27 H 1.09001 * 109.46852 * 59.99920 * 1 2 3 28 28 H 1.08994 * 109.47165 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47066 * 299.99991 * 1 2 3 30 30 H 1.09004 * 109.46900 * 59.99732 * 3 2 1 31 31 H 1.09008 * 109.46943 * 300.00140 * 3 2 1 32 32 H 1.09007 * 109.47016 * 304.99771 * 4 3 2 33 33 H 1.09000 * 109.47417 * 185.00302 * 4 3 2 34 34 H 0.97003 * 119.99767 * 359.73319 * 5 4 3 35 35 H 0.97005 * 119.99985 * 123.94518 * 9 8 6 36 36 H 1.00897 * 111.00524 * 299.99997 * 14 12 10 37 37 H 1.00897 * 111.00060 * 63.95781 * 14 12 10 38 38 H 1.08995 * 109.47204 * 305.00047 * 15 12 10 39 39 H 1.08991 * 109.47204 * 65.00266 * 15 12 10 40 40 H 1.08995 * 109.47402 * 299.99932 * 16 15 12 41 41 H 1.09004 * 109.47290 * 60.00473 * 16 15 12 42 42 H 0.96996 * 119.99855 * 179.97438 * 20 19 17 43 43 H 1.08996 * 117.49798 * 359.97438 * 25 8 6 44 44 H 1.08998 * 117.50334 * 145.01801 * 25 8 6 45 45 H 1.08995 * 117.50047 * 214.98123 * 26 8 6 46 46 H 1.09003 * 117.49691 * 0.02562 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 5.2883 0.3556 -1.4762 7 8 6.1108 0.7628 -0.6833 8 6 5.7340 -0.3838 -2.7113 9 7 5.2562 -1.7637 -2.8285 10 6 5.5076 -2.6499 -1.8447 11 8 6.2059 -2.3313 -0.9055 12 6 4.9211 -4.0365 -1.9113 13 1 3.8987 -3.9809 -2.2851 14 7 4.9201 -4.6327 -0.5688 15 6 5.7621 -4.9011 -2.8528 16 6 5.0978 -6.2694 -3.0181 17 6 5.9257 -7.1209 -3.9459 18 1 6.8349 -6.7257 -4.3743 19 6 5.5229 -8.4047 -4.2469 20 7 4.4160 -8.8861 -3.7247 21 14 6.5495 -9.4603 -5.3963 22 1 7.7383 -8.6918 -5.8448 23 1 6.9927 -10.6840 -4.6811 24 1 5.7340 -9.8447 -6.5762 25 6 7.1278 -0.0695 -3.2585 26 6 5.8849 0.4235 -4.0022 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8514 0.5682 0.8410 33 1 3.9785 2.1765 0.0890 34 1 3.3222 0.3001 -1.9190 35 1 4.7589 -2.0397 -3.6144 36 1 5.8572 -4.6952 -0.2001 37 1 4.3195 -4.1160 0.0559 38 1 5.8364 -4.4134 -3.8247 39 1 6.7599 -5.0299 -2.4336 40 1 5.0234 -6.7571 -2.0462 41 1 4.0999 -6.1406 -3.4373 42 1 4.1325 -9.7891 -3.9368 43 1 7.7222 0.6724 -2.7253 44 1 7.6897 -0.8895 -3.7057 45 1 5.6291 -0.0721 -4.9386 46 1 5.6623 1.4896 -3.9580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579037605.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:29 Heat of formation + Delta-G solvation = -99.596610 kcal Electronic energy + Delta-G solvation = -26647.870619 eV Core-core repulsion = 22766.238855 eV Total energy + Delta-G solvation = -3881.631765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.65791 -39.23542 -38.32302 -36.89696 -35.11417 -34.92333 -32.85950 -32.70403 -30.25319 -30.07133 -26.81002 -26.49979 -24.71956 -23.68798 -22.84815 -22.29745 -20.99513 -20.06604 -19.68886 -17.86773 -17.20987 -17.06189 -16.74388 -16.16150 -15.99938 -15.63091 -15.40606 -15.28309 -14.89596 -14.49420 -14.41251 -14.21670 -13.97125 -13.43051 -13.32114 -13.06339 -12.61528 -12.32198 -12.15691 -12.01666 -11.80921 -11.62272 -11.55476 -11.31431 -11.12737 -10.90833 -10.65643 -10.51633 -10.19492 -10.08667 -10.03494 -9.79389 -9.36229 -9.28295 -9.03875 -8.97349 -8.34445 -8.19386 -5.93490 -3.95493 2.29129 2.73442 2.89563 3.00721 3.31268 3.34085 3.41868 3.45704 3.64205 4.37146 4.49433 4.50393 4.58327 4.60563 4.68955 4.85554 4.89039 4.96053 5.00579 5.06111 5.22083 5.25905 5.32575 5.36595 5.42164 5.54232 5.54873 5.71929 5.84044 5.85247 6.17229 6.37260 6.44318 6.66206 6.68919 7.09136 7.25896 7.38046 7.57686 7.76906 7.82042 7.96997 8.07093 8.13884 8.32770 8.49012 9.12783 9.67706 11.17419 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.003082 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.565901 B = 9084.001199 C =10236.156599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.049 3.951 4 C 0.122 3.878 5 N -0.720 5.720 6 C 0.555 3.445 7 O -0.520 6.520 8 C 0.070 3.930 9 N -0.697 5.697 10 C 0.483 3.517 11 O -0.530 6.530 12 C 0.082 3.918 13 H 0.098 0.902 14 N -0.805 5.805 15 C -0.095 4.095 16 C 0.031 3.969 17 C -0.521 4.521 18 H 0.052 0.948 19 C 0.057 3.943 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.285 1.285 25 C -0.145 4.145 26 C -0.160 4.160 27 H 0.041 0.959 28 H 0.090 0.910 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.403 0.597 35 H 0.408 0.592 36 H 0.348 0.652 37 H 0.334 0.666 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.035 0.965 41 H 0.013 0.987 42 H 0.259 0.741 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.112 0.888 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.536 24.385 2.356 25.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C -0.028 4.028 4 C -0.002 4.002 5 N -0.373 5.373 6 C 0.339 3.661 7 O -0.394 6.394 8 C -0.021 4.021 9 N -0.353 5.353 10 C 0.268 3.732 11 O -0.405 6.405 12 C -0.034 4.034 13 H 0.116 0.884 14 N -0.333 5.333 15 C -0.134 4.134 16 C -0.006 4.006 17 C -0.560 4.560 18 H 0.071 0.929 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.717 3.283 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.184 4.184 26 C -0.197 4.197 27 H 0.060 0.940 28 H 0.108 0.892 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.238 0.762 35 H 0.244 0.756 36 H 0.162 0.838 37 H 0.146 0.854 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.031 0.969 42 H 0.068 0.932 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.130 0.870 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.748 23.900 3.353 25.060 hybrid contribution 0.038 0.242 -1.037 1.065 sum -6.709 24.142 2.317 25.164 Atomic orbital electron populations 1.22783 0.80565 1.03304 0.99904 1.87983 1.20055 1.27054 1.95403 1.22801 0.92985 0.85724 1.01319 1.21379 0.91962 0.99205 0.87607 1.45776 1.07416 1.63486 1.20642 1.19424 0.82139 0.78710 0.85843 1.90702 1.52656 1.50101 1.45906 1.20437 1.02340 0.84954 0.94417 1.45566 1.58745 1.07167 1.23796 1.22972 0.80174 0.88484 0.81528 1.90730 1.36946 1.79090 1.33688 1.21836 1.01150 0.86795 0.93575 0.88364 1.59014 1.16557 1.55002 1.02717 1.21666 0.98232 0.98315 0.95156 1.19021 0.94995 0.88774 0.97819 1.21319 1.08523 0.98407 1.27723 0.92941 1.24994 0.95138 0.97924 0.96308 1.69984 1.22570 1.16388 1.44223 0.86599 0.80406 0.80564 0.80776 1.19859 1.21067 1.21124 1.23334 0.90370 1.03652 1.01015 1.23395 1.02350 1.00054 0.93936 0.93991 0.89184 0.94003 0.91520 0.92530 0.90559 0.89873 0.76232 0.75605 0.83805 0.85378 0.92871 0.92810 0.94650 0.96873 0.93170 0.87289 0.87331 0.87008 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.58 10.65 -35.23 -0.38 -3.95 16 3 C 0.05 0.33 6.07 37.15 0.23 0.56 16 4 C 0.12 1.15 6.06 -4.05 -0.02 1.12 16 5 N -0.72 -7.60 5.50 -60.30 -0.33 -7.93 16 6 C 0.56 7.67 6.24 -10.99 -0.07 7.60 16 7 O -0.52 -9.22 16.61 5.55 0.09 -9.13 16 8 C 0.07 0.84 2.27 -132.97 -0.30 0.54 16 9 N -0.70 -8.66 5.49 -48.68 -0.27 -8.92 16 10 C 0.48 7.81 6.86 -10.98 -0.08 7.74 16 11 O -0.53 -10.50 15.55 5.55 0.09 -10.42 16 12 C 0.08 1.39 3.15 -68.86 -0.22 1.18 16 13 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 14 N -0.81 -14.06 8.44 -5.65 -0.05 -14.10 16 15 C -0.10 -1.91 4.78 -26.73 -0.13 -2.04 16 16 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 17 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 18 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 21 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 C -0.14 -1.66 9.97 -26.73 -0.27 -1.93 16 26 C -0.16 -1.31 10.15 -26.73 -0.27 -1.58 16 27 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.40 3.50 8.48 -40.82 -0.35 3.16 16 35 H 0.41 4.01 8.82 -40.82 -0.36 3.65 16 36 H 0.35 6.25 8.58 -39.29 -0.34 5.91 16 37 H 0.33 5.25 9.06 -39.29 -0.36 4.89 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 41 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.11 1.31 7.92 -51.93 -0.41 0.90 16 44 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 393.03 15.07 5.92 5.92 Total: -1.00 -36.80 393.03 -7.44 -44.24 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -7.67 Total: 12.01 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -0.56 Total: 1.70 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.09 Total: -57.07 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.20 Total: -23.49 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.80 -7.44 -44.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579037605.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.356 kcal (2) G-P(sol) polarization free energy of solvation -36.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds