Wall clock time and date at job start Fri Apr 10 2020 18:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00317 * 2 1 4 4 C 1.52994 * 109.47515 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47488 * 64.99788 * 4 3 2 6 6 C 1.34771 * 120.00177 * 180.02562 * 5 4 3 7 7 O 1.21285 * 120.00134 * 354.97197 * 6 5 4 8 8 C 1.50696 * 119.99881 * 174.97180 * 6 5 4 9 9 N 1.46501 * 115.54863 * 298.60380 * 8 6 5 10 10 C 1.34777 * 120.00268 * 303.93894 * 9 8 6 11 11 O 1.21283 * 119.99920 * 354.99527 * 10 9 8 12 12 C 1.50703 * 120.00331 * 174.99050 * 10 9 8 13 13 H 1.09000 * 109.46864 * 320.00268 * 12 10 9 14 14 N 1.46896 * 109.47022 * 200.00151 * 12 10 9 15 15 C 1.53002 * 109.46648 * 80.00242 * 12 10 9 16 16 C 1.53003 * 109.46569 * 184.99993 * 15 12 10 17 17 C 1.50703 * 109.46938 * 179.97438 * 16 15 12 18 18 H 1.08004 * 119.99860 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99850 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00159 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99726 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47468 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47177 * 120.00111 * 21 19 17 24 24 H 1.48495 * 109.47398 * 239.99900 * 21 19 17 25 25 C 1.53000 * 117.50043 * 152.90075 * 8 6 5 26 26 C 1.53000 * 117.50415 * 84.27555 * 8 6 5 27 27 H 1.09001 * 109.46852 * 59.99920 * 1 2 3 28 28 H 1.08994 * 109.47165 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47066 * 299.99991 * 1 2 3 30 30 H 1.09004 * 109.46900 * 59.99732 * 3 2 1 31 31 H 1.09008 * 109.46943 * 300.00140 * 3 2 1 32 32 H 1.09007 * 109.47016 * 304.99771 * 4 3 2 33 33 H 1.09000 * 109.47417 * 185.00302 * 4 3 2 34 34 H 0.97003 * 119.99767 * 359.73319 * 5 4 3 35 35 H 0.97005 * 119.99985 * 123.94518 * 9 8 6 36 36 H 1.00897 * 111.00524 * 299.99997 * 14 12 10 37 37 H 1.00897 * 111.00060 * 63.95781 * 14 12 10 38 38 H 1.08995 * 109.47204 * 305.00047 * 15 12 10 39 39 H 1.08991 * 109.47204 * 65.00266 * 15 12 10 40 40 H 1.08995 * 109.47402 * 299.99932 * 16 15 12 41 41 H 1.09004 * 109.47290 * 60.00473 * 16 15 12 42 42 H 0.96996 * 119.99855 * 179.97438 * 20 19 17 43 43 H 1.08996 * 117.49798 * 359.97438 * 25 8 6 44 44 H 1.08998 * 117.50334 * 145.01801 * 25 8 6 45 45 H 1.08995 * 117.50047 * 214.98123 * 26 8 6 46 46 H 1.09003 * 117.49691 * 0.02562 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 5.2883 0.3556 -1.4762 7 8 6.1108 0.7628 -0.6833 8 6 5.7340 -0.3838 -2.7113 9 7 5.2562 -1.7637 -2.8285 10 6 5.5076 -2.6499 -1.8447 11 8 6.2059 -2.3313 -0.9055 12 6 4.9211 -4.0365 -1.9113 13 1 3.8987 -3.9809 -2.2851 14 7 4.9201 -4.6327 -0.5688 15 6 5.7621 -4.9011 -2.8528 16 6 5.0978 -6.2694 -3.0181 17 6 5.9257 -7.1209 -3.9459 18 1 6.8349 -6.7257 -4.3743 19 6 5.5229 -8.4047 -4.2469 20 7 4.4160 -8.8861 -3.7247 21 14 6.5495 -9.4603 -5.3963 22 1 7.7383 -8.6918 -5.8448 23 1 6.9927 -10.6840 -4.6811 24 1 5.7340 -9.8447 -6.5762 25 6 7.1278 -0.0695 -3.2585 26 6 5.8849 0.4235 -4.0022 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8514 0.5682 0.8410 33 1 3.9785 2.1765 0.0890 34 1 3.3222 0.3001 -1.9190 35 1 4.7589 -2.0397 -3.6144 36 1 5.8572 -4.6952 -0.2001 37 1 4.3195 -4.1160 0.0559 38 1 5.8364 -4.4134 -3.8247 39 1 6.7599 -5.0299 -2.4336 40 1 5.0234 -6.7571 -2.0462 41 1 4.0999 -6.1406 -3.4373 42 1 4.1325 -9.7891 -3.9368 43 1 7.7222 0.6724 -2.7253 44 1 7.6897 -0.8895 -3.7057 45 1 5.6291 -0.0721 -4.9386 46 1 5.6623 1.4896 -3.9580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579037605.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:29 Heat of formation + Delta-G solvation = -131.191162 kcal Electronic energy + Delta-G solvation = -26649.240662 eV Core-core repulsion = 22766.238855 eV Total energy + Delta-G solvation = -3883.001807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.73539 -40.42275 -38.99421 -37.88488 -36.72826 -35.84595 -34.80398 -33.87908 -31.91848 -30.97549 -28.25430 -27.29741 -25.97663 -25.04220 -23.62333 -23.16409 -22.56115 -21.38668 -20.86297 -18.89157 -18.70617 -18.04000 -17.71283 -17.48366 -17.09738 -16.77593 -16.47649 -16.35565 -16.07565 -15.96688 -15.41309 -15.34698 -15.10057 -14.93729 -14.32895 -14.22115 -13.90519 -13.82172 -13.41704 -13.19631 -12.81599 -12.73768 -12.56145 -12.51631 -12.28064 -12.23137 -12.17503 -12.06721 -11.74129 -11.63585 -11.23847 -11.09574 -10.97880 -10.67813 -10.47897 -10.21627 -10.11007 -9.65565 -8.12397 -6.22287 1.25490 1.42172 1.43610 1.46966 1.56019 1.97812 2.03255 2.45860 2.72262 2.78537 3.20840 3.49036 3.59191 3.68612 3.80661 3.85169 3.89380 4.11305 4.11652 4.31374 4.38256 4.44155 4.52147 4.54470 4.58010 4.62571 4.78684 4.79156 4.88493 4.90779 4.94962 5.08475 5.26065 5.29099 5.35870 5.59363 5.86397 6.00340 6.06290 6.18032 6.31775 6.34113 6.43493 6.49146 6.96589 7.11401 7.12897 7.45791 8.98973 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.003082 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.565901 B = 9084.001199 C =10236.156599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.418 6.418 3 C 0.055 3.945 4 C 0.118 3.882 5 N -0.706 5.706 6 C 0.548 3.452 7 O -0.570 6.570 8 C 0.044 3.956 9 N -0.676 5.676 10 C 0.488 3.512 11 O -0.569 6.569 12 C 0.091 3.909 13 H 0.115 0.885 14 N -0.817 5.817 15 C -0.081 4.081 16 C 0.039 3.961 17 C -0.541 4.541 18 H 0.056 0.944 19 C 0.002 3.998 20 N -0.929 5.929 21 Si 0.959 3.041 22 H -0.264 1.264 23 H -0.283 1.283 24 H -0.276 1.276 25 C -0.165 4.165 26 C -0.111 4.111 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.414 0.586 35 H 0.423 0.577 36 H 0.343 0.657 37 H 0.344 0.656 38 H 0.073 0.927 39 H 0.039 0.961 40 H 0.003 0.997 41 H -0.003 1.003 42 H 0.261 0.739 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.141 0.859 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.370 25.756 0.133 27.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.338 6.338 3 C -0.022 4.022 4 C -0.005 4.005 5 N -0.358 5.358 6 C 0.333 3.667 7 O -0.448 6.448 8 C -0.047 4.047 9 N -0.332 5.332 10 C 0.274 3.726 11 O -0.447 6.447 12 C -0.025 4.025 13 H 0.133 0.867 14 N -0.345 5.345 15 C -0.119 4.119 16 C 0.002 3.998 17 C -0.579 4.579 18 H 0.074 0.926 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.784 3.216 22 H -0.188 1.188 23 H -0.209 1.209 24 H -0.202 1.202 25 C -0.204 4.204 26 C -0.148 4.148 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.111 0.889 34 H 0.251 0.749 35 H 0.263 0.737 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.022 0.978 41 H 0.016 0.984 42 H 0.070 0.930 43 H 0.114 0.886 44 H 0.123 0.877 45 H 0.159 0.841 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.645 25.296 1.074 26.448 hybrid contribution 0.247 -0.156 -0.318 0.432 sum -7.398 25.140 0.757 26.217 Atomic orbital electron populations 1.22902 0.79193 1.03562 1.01232 1.87931 1.21674 1.28462 1.95701 1.22833 0.90727 0.85279 1.03331 1.21477 0.94137 0.98827 0.86055 1.45742 1.06677 1.62312 1.21055 1.19789 0.82628 0.78395 0.85892 1.90673 1.54051 1.52432 1.47612 1.20544 1.03350 0.84732 0.96118 1.45288 1.57691 1.07048 1.23134 1.22623 0.79638 0.88569 0.81778 1.90729 1.38725 1.79758 1.35480 1.21655 1.01352 0.86850 0.92660 0.86748 1.59010 1.16492 1.55682 1.03305 1.21401 0.97284 0.96277 0.96973 1.18828 0.94388 0.91167 0.95393 1.21758 1.08885 0.99212 1.28090 0.92612 1.25890 0.96313 0.99433 0.97988 1.70111 1.24264 1.16938 1.45668 0.85495 0.78971 0.78482 0.78644 1.18811 1.20925 1.20174 1.23343 0.90850 1.03854 1.02355 1.23596 0.97672 1.00816 0.92713 0.92391 0.89573 0.92913 0.89722 0.90141 0.93592 0.88938 0.74935 0.73736 0.84349 0.84339 0.90856 0.94264 0.97850 0.98417 0.92968 0.88598 0.87734 0.84119 0.85451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.18 10.65 -148.98 -1.59 -8.77 16 3 C 0.05 0.65 6.07 71.98 0.44 1.09 16 4 C 0.12 2.17 6.06 86.38 0.52 2.69 16 5 N -0.71 -14.12 5.50 -463.07 -2.55 -16.67 16 6 C 0.55 14.90 6.24 87.66 0.55 15.45 16 7 O -0.57 -20.77 16.61 -3.04 -0.05 -20.82 16 8 C 0.04 0.98 2.27 2.86 0.01 0.99 16 9 N -0.68 -15.57 5.49 -426.32 -2.34 -17.91 16 10 C 0.49 15.54 6.86 87.66 0.60 16.14 16 11 O -0.57 -22.91 15.55 -3.04 -0.05 -22.96 16 12 C 0.09 3.02 3.15 44.17 0.14 3.16 16 13 H 0.11 3.44 8.14 -2.39 -0.02 3.43 16 14 N -0.82 -29.02 8.44 -171.80 -1.45 -30.47 16 15 C -0.08 -3.22 4.78 30.60 0.15 -3.08 16 16 C 0.04 2.03 4.86 29.85 0.15 2.18 16 17 C -0.54 -30.51 9.11 25.60 0.23 -30.28 16 18 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 19 C 0.00 0.09 5.46 84.65 0.46 0.55 16 20 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 21 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 22 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 25 C -0.17 -3.59 9.97 30.59 0.31 -3.29 16 26 C -0.11 -1.42 10.15 30.59 0.31 -1.11 16 27 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.41 6.31 8.48 -92.71 -0.79 5.53 16 35 H 0.42 7.04 8.82 -92.70 -0.82 6.22 16 36 H 0.34 12.74 8.58 -89.70 -0.77 11.97 16 37 H 0.34 10.95 9.06 -89.70 -0.81 10.14 16 38 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.00 0.18 7.75 -2.39 -0.02 0.16 16 41 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 42 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.10 2.33 7.92 -2.39 -0.02 2.31 16 44 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -82.22 393.03 -2.77 -84.99 By element: Atomic # 1 Polarization: 38.55 SS G_CDS: -2.17 Total: 36.39 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 5.11 Total: 6.03 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -6.05 Total: -121.17 kcal Atomic # 8 Polarization: -50.86 SS G_CDS: -1.68 Total: -52.54 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -82.22 -2.77 -84.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579037605.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.198 kcal (2) G-P(sol) polarization free energy of solvation -82.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds