Wall clock time and date at job start Fri Apr 10 2020 18:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99788 * 2 1 4 4 C 1.52998 * 109.47073 * 293.95231 * 3 2 1 5 5 N 1.46498 * 109.47216 * 180.02562 * 4 3 2 6 6 C 1.46494 * 120.00227 * 90.00079 * 5 4 3 7 7 C 1.34784 * 119.99794 * 269.99880 * 5 4 3 8 8 O 1.21282 * 120.00060 * 0.02562 * 7 5 4 9 9 C 1.50698 * 120.00094 * 179.97438 * 7 5 4 10 10 H 1.09001 * 110.27375 * 305.64388 * 9 7 5 11 11 C 1.54949 * 110.30680 * 67.83725 * 9 7 5 12 12 C 1.55303 * 100.94283 * 155.36134 * 11 9 7 13 13 C 1.54382 * 102.25248 * 325.86271 * 12 11 9 14 14 O 1.43237 * 107.58476 * 21.36057 * 13 12 11 15 15 C 1.46901 * 110.99975 * 123.94949 * 2 1 3 16 16 C 1.50701 * 109.46921 * 66.04817 * 15 2 1 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 2 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 2 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47117 * 59.99412 * 23 21 19 25 25 H 1.48498 * 109.47600 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46756 * 300.00019 * 23 21 19 27 27 H 1.09001 * 109.47121 * 296.04690 * 1 2 3 28 28 H 1.09005 * 109.47342 * 56.04784 * 1 2 3 29 29 H 1.08999 * 109.46894 * 176.04703 * 1 2 3 30 30 H 1.09003 * 109.47188 * 53.95311 * 3 2 1 31 31 H 1.08993 * 109.47221 * 173.95234 * 3 2 1 32 32 H 1.09003 * 109.47179 * 300.00086 * 4 3 2 33 33 H 1.09002 * 109.47148 * 59.99731 * 4 3 2 34 34 H 1.08999 * 109.47629 * 90.00089 * 6 5 4 35 35 H 1.08999 * 109.47107 * 210.00132 * 6 5 4 36 36 H 1.09004 * 109.47139 * 329.99618 * 6 5 4 37 37 H 1.09005 * 111.12481 * 273.27850 * 11 9 7 38 38 H 1.08996 * 111.12816 * 37.43768 * 11 9 7 39 39 H 1.09000 * 110.84760 * 207.67297 * 12 11 9 40 40 H 1.09004 * 110.84997 * 84.05181 * 12 11 9 41 41 H 1.08996 * 109.83417 * 261.84266 * 13 12 11 42 42 H 1.08998 * 109.83096 * 140.86555 * 13 12 11 43 43 H 1.09002 * 109.47401 * 306.04845 * 15 2 1 44 44 H 1.09001 * 109.46874 * 186.04858 * 15 2 1 45 45 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 46 46 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 -1.3183 5 7 2.1569 3.4249 -1.3185 6 6 3.5018 3.6928 -1.8339 7 6 1.4029 4.4367 -0.8447 8 8 0.2897 4.2149 -0.4176 9 6 1.9436 5.8433 -0.8444 10 1 2.9022 5.8794 -0.3268 11 6 2.0944 6.3617 -2.2968 12 6 2.0103 7.8962 -2.0723 13 6 1.0155 8.0012 -0.8965 14 8 1.0071 6.7374 -0.2225 15 6 1.9954 -0.7659 1.1377 16 6 1.6369 -2.2204 0.9730 17 8 1.0055 -2.5832 0.0030 18 7 2.0189 -3.1180 1.9029 19 6 1.6932 -4.4413 1.7528 20 1 1.1302 -4.7642 0.8896 21 6 2.0865 -5.3666 2.7117 22 7 2.7711 -4.9736 3.7624 23 14 1.6434 -7.1697 2.5069 24 1 2.2361 -7.6850 1.2467 25 1 2.1758 -7.9441 3.6567 26 1 0.1663 -7.3135 2.4542 27 1 -0.3633 0.4513 0.9233 28 1 -0.3634 0.5740 -0.8525 29 1 -0.3633 -1.0252 -0.0708 30 1 1.5610 1.9274 0.8309 31 1 3.0796 1.3445 0.1083 32 1 2.0658 1.5015 -2.1492 33 1 0.5471 2.0844 -1.4266 34 1 3.4458 3.9088 -2.9008 35 1 3.9270 4.5498 -1.3116 36 1 4.1333 2.8191 -1.6727 37 1 3.0596 6.0785 -2.7168 38 1 1.2763 6.0113 -2.9259 39 1 1.6187 8.3968 -2.9578 40 1 2.9833 8.3015 -1.7946 41 1 0.0181 8.2253 -1.2748 42 1 1.3362 8.7844 -0.2096 43 1 1.5611 -0.3871 2.0629 44 1 3.0797 -0.6609 1.1757 45 1 2.5242 -2.8278 2.6784 46 1 3.0460 -5.6197 4.4316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667533540.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:41 Heat of formation + Delta-G solvation = -97.123235 kcal Electronic energy + Delta-G solvation = -26190.576354 eV Core-core repulsion = 22309.051843 eV Total energy + Delta-G solvation = -3881.524511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.76539 -38.99028 -38.43289 -36.65878 -35.50549 -33.81558 -32.64880 -31.23975 -30.95726 -29.21754 -27.62855 -27.02038 -25.44223 -24.36800 -23.08701 -22.18913 -21.10181 -19.54568 -19.08438 -18.01290 -17.79770 -16.96314 -16.53025 -16.03346 -15.88081 -15.44054 -15.21811 -14.91726 -14.57473 -14.29416 -13.98587 -13.91282 -13.73607 -13.41141 -13.34086 -13.20977 -12.81147 -12.63160 -12.39600 -12.12762 -12.03515 -12.00403 -11.78750 -11.48159 -11.44448 -11.26002 -11.18084 -10.87334 -10.73546 -10.41509 -10.31510 -10.18284 -9.64382 -9.43467 -8.97319 -8.38923 -7.94247 -7.80677 -6.38209 -3.78953 2.31723 2.51688 3.22560 3.27875 3.32376 3.45808 3.85776 3.94786 4.07457 4.14414 4.30513 4.33913 4.56208 4.59486 4.73331 4.80589 4.95674 4.99977 5.11337 5.15351 5.17959 5.23840 5.28522 5.29960 5.32231 5.37988 5.52988 5.56206 5.72315 5.78259 5.84702 5.93844 6.00982 6.11226 6.25117 6.33156 6.49886 6.65883 7.09475 7.30987 7.42763 7.58335 7.95386 8.09922 8.65863 9.21622 9.58353 10.10553 10.79545 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.041578 B = 0.002067 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.276230 B =13544.478568 C =13572.751510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.516 5.516 3 C 0.041 3.959 4 C 0.119 3.881 5 N -0.613 5.613 6 C 0.073 3.927 7 C 0.511 3.489 8 O -0.514 6.514 9 C 0.065 3.935 10 H 0.097 0.903 11 C -0.146 4.146 12 C -0.154 4.154 13 C 0.047 3.953 14 O -0.355 6.355 15 C 0.047 3.953 16 C 0.445 3.555 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.016 0.984 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.034 0.966 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.087 0.913 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.646 25.976 -10.626 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.240 5.240 3 C -0.089 4.089 4 C -0.003 4.003 5 N -0.349 5.349 6 C -0.070 4.070 7 C 0.297 3.703 8 O -0.388 6.388 9 C 0.004 3.996 10 H 0.114 0.886 11 C -0.184 4.184 12 C -0.192 4.192 13 C -0.029 4.029 14 O -0.273 6.273 15 C -0.084 4.084 16 C 0.231 3.769 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 H 0.035 0.965 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.105 0.895 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.705 25.220 -11.133 27.816 hybrid contribution 0.221 -0.220 1.112 1.155 sum 3.926 25.000 -10.021 27.218 Atomic orbital electron populations 1.22594 0.86546 1.04450 0.99169 1.61549 1.08936 1.10747 1.42793 1.22428 1.00117 0.89344 0.96990 1.21510 1.00985 0.79576 0.98261 1.47789 1.16549 1.07636 1.62914 1.21954 0.83140 1.02802 0.99121 1.20456 0.85662 0.86302 0.77899 1.90747 1.19419 1.84153 1.44517 1.22838 0.93394 0.88893 0.94432 0.88579 1.23301 1.04226 0.95476 0.95394 1.23139 1.00602 0.96023 0.99419 1.23225 0.99763 0.86242 0.93696 1.88554 1.61695 1.22627 1.54399 1.21864 1.00537 0.94135 0.91905 1.19725 0.85377 0.86599 0.85225 1.90477 1.43869 1.80145 1.31623 1.41859 1.49509 1.07338 1.21477 1.19647 1.32921 0.82292 1.07899 0.87964 1.25260 0.96884 1.00563 0.95319 1.69609 1.38095 1.35818 1.10909 0.85914 0.78892 0.81720 0.77656 1.19919 1.21026 1.19937 0.96526 0.92074 0.88515 0.94737 0.90947 0.89203 0.89464 0.92157 0.91163 0.90220 0.88747 0.89685 0.89483 0.90035 0.90947 0.90893 0.93454 0.89496 0.77505 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.01 60.07 0.54 0.90 16 2 N -0.52 -9.05 4.50 -244.36 -1.10 -10.15 16 3 C 0.04 0.57 5.28 -3.82 -0.02 0.55 16 4 C 0.12 1.46 5.34 -4.04 -0.02 1.44 16 5 N -0.61 -6.21 2.87 -181.57 -0.52 -6.73 16 6 C 0.07 0.42 9.07 59.84 0.54 0.96 16 7 C 0.51 6.31 7.08 -10.98 -0.08 6.24 16 8 O -0.51 -8.90 16.13 -13.77 -0.22 -9.12 16 9 C 0.07 0.59 2.94 -26.86 -0.08 0.51 16 10 H 0.10 0.66 7.13 -51.93 -0.37 0.29 16 11 C -0.15 -0.83 5.87 -24.48 -0.14 -0.98 16 12 C -0.15 -0.70 7.02 -24.79 -0.17 -0.87 16 13 C 0.05 0.34 7.79 37.88 0.30 0.63 16 14 O -0.35 -4.11 10.61 -54.56 -0.58 -4.69 16 15 C 0.05 0.88 5.45 -4.97 -0.03 0.85 16 16 C 0.45 10.74 7.51 -10.98 -0.08 10.66 16 17 O -0.58 -15.73 13.89 5.55 0.08 -15.66 16 18 N -0.57 -14.58 5.29 -10.96 -0.06 -14.63 16 19 C -0.30 -8.40 9.68 -14.94 -0.14 -8.55 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.85 13.05 55.50 0.72 -24.13 16 23 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.98 6.30 -51.93 -0.33 0.65 16 29 H 0.10 2.03 5.88 -51.93 -0.31 1.72 16 30 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 31 H 0.07 0.90 7.93 -51.93 -0.41 0.49 16 32 H 0.09 1.01 8.07 -51.93 -0.42 0.59 16 33 H 0.09 1.24 5.75 -51.93 -0.30 0.94 16 34 H 0.06 0.25 7.76 -51.93 -0.40 -0.15 16 35 H 0.07 0.27 6.06 -51.93 -0.31 -0.04 16 36 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 37 H 0.09 0.31 6.79 -51.93 -0.35 -0.05 16 38 H 0.08 0.58 8.05 -51.93 -0.42 0.16 16 39 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 44 H 0.09 1.45 7.93 -51.93 -0.41 1.04 16 45 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 46 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 370.79 15.07 5.59 5.59 Total: -1.00 -35.61 370.79 -7.84 -43.45 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.24 Total: 6.96 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 0.51 Total: 12.83 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.96 Total: -55.64 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.72 Total: -29.47 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.61 -7.84 -43.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667533540.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.672 kcal (2) G-P(sol) polarization free energy of solvation -35.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds