Wall clock time and date at job start Fri Apr 10 2020 18:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99788 * 2 1 4 4 C 1.52998 * 109.47073 * 293.95231 * 3 2 1 5 5 N 1.46498 * 109.47216 * 180.02562 * 4 3 2 6 6 C 1.46494 * 120.00227 * 90.00079 * 5 4 3 7 7 C 1.34784 * 119.99794 * 269.99880 * 5 4 3 8 8 O 1.21282 * 120.00060 * 0.02562 * 7 5 4 9 9 C 1.50698 * 120.00094 * 179.97438 * 7 5 4 10 10 H 1.09001 * 110.27375 * 305.64388 * 9 7 5 11 11 C 1.54949 * 110.30680 * 67.83725 * 9 7 5 12 12 C 1.55303 * 100.94283 * 155.36134 * 11 9 7 13 13 C 1.54382 * 102.25248 * 325.86271 * 12 11 9 14 14 O 1.43237 * 107.58476 * 21.36057 * 13 12 11 15 15 C 1.46901 * 110.99975 * 123.94949 * 2 1 3 16 16 C 1.50701 * 109.46921 * 66.04817 * 15 2 1 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 2 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 2 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47117 * 59.99412 * 23 21 19 25 25 H 1.48498 * 109.47600 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46756 * 300.00019 * 23 21 19 27 27 H 1.09001 * 109.47121 * 296.04690 * 1 2 3 28 28 H 1.09005 * 109.47342 * 56.04784 * 1 2 3 29 29 H 1.08999 * 109.46894 * 176.04703 * 1 2 3 30 30 H 1.09003 * 109.47188 * 53.95311 * 3 2 1 31 31 H 1.08993 * 109.47221 * 173.95234 * 3 2 1 32 32 H 1.09003 * 109.47179 * 300.00086 * 4 3 2 33 33 H 1.09002 * 109.47148 * 59.99731 * 4 3 2 34 34 H 1.08999 * 109.47629 * 90.00089 * 6 5 4 35 35 H 1.08999 * 109.47107 * 210.00132 * 6 5 4 36 36 H 1.09004 * 109.47139 * 329.99618 * 6 5 4 37 37 H 1.09005 * 111.12481 * 273.27850 * 11 9 7 38 38 H 1.08996 * 111.12816 * 37.43768 * 11 9 7 39 39 H 1.09000 * 110.84760 * 207.67297 * 12 11 9 40 40 H 1.09004 * 110.84997 * 84.05181 * 12 11 9 41 41 H 1.08996 * 109.83417 * 261.84266 * 13 12 11 42 42 H 1.08998 * 109.83096 * 140.86555 * 13 12 11 43 43 H 1.09002 * 109.47401 * 306.04845 * 15 2 1 44 44 H 1.09001 * 109.46874 * 186.04858 * 15 2 1 45 45 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 46 46 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 -1.3183 5 7 2.1569 3.4249 -1.3185 6 6 3.5018 3.6928 -1.8339 7 6 1.4029 4.4367 -0.8447 8 8 0.2897 4.2149 -0.4176 9 6 1.9436 5.8433 -0.8444 10 1 2.9022 5.8794 -0.3268 11 6 2.0944 6.3617 -2.2968 12 6 2.0103 7.8962 -2.0723 13 6 1.0155 8.0012 -0.8965 14 8 1.0071 6.7374 -0.2225 15 6 1.9954 -0.7659 1.1377 16 6 1.6369 -2.2204 0.9730 17 8 1.0055 -2.5832 0.0030 18 7 2.0189 -3.1180 1.9029 19 6 1.6932 -4.4413 1.7528 20 1 1.1302 -4.7642 0.8896 21 6 2.0865 -5.3666 2.7117 22 7 2.7711 -4.9736 3.7624 23 14 1.6434 -7.1697 2.5069 24 1 2.2361 -7.6850 1.2467 25 1 2.1758 -7.9441 3.6567 26 1 0.1663 -7.3135 2.4542 27 1 -0.3633 0.4513 0.9233 28 1 -0.3634 0.5740 -0.8525 29 1 -0.3633 -1.0252 -0.0708 30 1 1.5610 1.9274 0.8309 31 1 3.0796 1.3445 0.1083 32 1 2.0658 1.5015 -2.1492 33 1 0.5471 2.0844 -1.4266 34 1 3.4458 3.9088 -2.9008 35 1 3.9270 4.5498 -1.3116 36 1 4.1333 2.8191 -1.6727 37 1 3.0596 6.0785 -2.7168 38 1 1.2763 6.0113 -2.9259 39 1 1.6187 8.3968 -2.9578 40 1 2.9833 8.3015 -1.7946 41 1 0.0181 8.2253 -1.2748 42 1 1.3362 8.7844 -0.2096 43 1 1.5611 -0.3871 2.0629 44 1 3.0797 -0.6609 1.1757 45 1 2.5242 -2.8278 2.6784 46 1 3.0460 -5.6197 4.4316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667533540.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:40 Heat of formation + Delta-G solvation = -124.291740 kcal Electronic energy + Delta-G solvation = -26191.754469 eV Core-core repulsion = 22309.051843 eV Total energy + Delta-G solvation = -3882.702626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.54678 -40.40922 -39.59009 -38.06892 -36.56864 -35.83200 -33.30248 -33.21393 -31.83461 -30.14882 -29.10653 -27.75018 -26.98243 -25.77900 -24.02391 -22.62450 -22.31577 -21.02139 -20.32372 -19.84972 -18.70474 -17.90704 -17.70143 -17.27212 -16.75176 -16.63982 -16.37281 -16.18516 -16.14856 -15.58881 -15.52821 -15.12264 -14.81172 -14.39839 -14.22297 -14.19517 -13.93676 -13.77713 -13.45360 -13.31591 -13.06523 -12.99444 -12.91783 -12.66900 -12.61271 -12.55587 -12.41843 -12.21192 -12.12090 -11.89515 -11.82789 -11.45573 -11.06718 -10.43547 -10.34209 -10.00340 -9.76119 -9.31928 -8.45756 -5.94554 1.40200 1.41704 1.45031 1.52954 1.71713 2.04893 2.29164 2.72431 2.96969 3.20485 3.32221 3.40716 3.56514 3.87474 3.90095 4.02975 4.10406 4.12645 4.21044 4.31837 4.33859 4.35874 4.44290 4.48938 4.55318 4.60150 4.68944 4.74160 4.77261 4.79758 4.85299 4.89562 4.96074 5.02123 5.14513 5.19478 5.40065 5.41833 5.81454 5.89904 6.00784 6.11211 6.32689 6.61005 7.08494 7.13217 7.56316 8.12157 8.71455 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.041578 B = 0.002067 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.276230 B =13544.478568 C =13572.751510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.526 5.526 3 C 0.049 3.951 4 C 0.124 3.876 5 N -0.606 5.606 6 C 0.062 3.938 7 C 0.501 3.499 8 O -0.579 6.579 9 C 0.064 3.936 10 H 0.123 0.877 11 C -0.140 4.140 12 C -0.143 4.143 13 C 0.035 3.965 14 O -0.398 6.398 15 C 0.058 3.942 16 C 0.442 3.558 17 O -0.612 6.612 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.080 0.920 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.273 1.273 27 H 0.015 0.985 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.019 0.981 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.128 0.872 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.059 0.941 44 H 0.116 0.884 45 H 0.396 0.604 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.149 27.331 -11.482 30.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.250 5.250 3 C -0.080 4.080 4 C 0.000 4.000 5 N -0.339 5.339 6 C -0.079 4.079 7 C 0.290 3.710 8 O -0.458 6.458 9 C 0.003 3.997 10 H 0.141 0.859 11 C -0.177 4.177 12 C -0.180 4.180 13 C -0.041 4.041 14 O -0.317 6.317 15 C -0.073 4.073 16 C 0.230 3.770 17 O -0.498 6.498 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.198 1.198 27 H 0.034 0.966 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.146 0.854 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.077 0.923 44 H 0.134 0.866 45 H 0.229 0.771 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.268 26.609 -12.003 29.856 hybrid contribution -0.556 -0.578 1.354 1.574 sum 5.712 26.031 -10.649 28.699 Atomic orbital electron populations 1.22422 0.87307 1.02385 0.99836 1.61523 1.08433 1.12810 1.42270 1.22450 1.01135 0.86983 0.97395 1.21326 0.99801 0.81054 0.97773 1.47861 1.17974 1.06176 1.61930 1.22334 0.80566 1.04306 1.00682 1.21260 0.85007 0.88038 0.76744 1.90710 1.22277 1.85244 1.47584 1.23054 0.93378 0.86382 0.96855 0.85930 1.23342 1.05394 0.96062 0.92935 1.23149 1.00927 0.95270 0.98693 1.23455 1.00537 0.84986 0.95076 1.88512 1.62865 1.24457 1.55906 1.21764 1.02323 0.90382 0.92880 1.20670 0.83810 0.88552 0.83997 1.90458 1.45074 1.81362 1.32948 1.41923 1.50055 1.07066 1.22100 1.19629 1.34442 0.83956 1.08144 0.90220 1.26058 0.96286 1.04418 0.94664 1.69673 1.38082 1.37260 1.11188 0.84973 0.78546 0.76663 0.78050 1.19563 1.19505 1.19850 0.96620 0.90635 0.91863 0.96281 0.88505 0.87686 0.92074 0.89926 0.88698 0.89395 0.85365 0.91284 0.88025 0.87757 0.91707 0.89657 0.92271 0.86580 0.77055 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 9.01 127.69 1.15 2.21 16 2 N -0.53 -18.20 4.50 -927.03 -4.17 -22.37 16 3 C 0.05 1.32 5.28 86.30 0.46 1.77 16 4 C 0.12 2.93 5.34 86.38 0.46 3.39 16 5 N -0.61 -11.21 2.87 -846.76 -2.43 -13.64 16 6 C 0.06 0.47 9.07 127.77 1.16 1.63 16 7 C 0.50 12.19 7.08 87.66 0.62 12.81 16 8 O -0.58 -20.98 16.13 15.44 0.25 -20.73 16 9 C 0.06 1.04 2.94 30.51 0.09 1.13 16 10 H 0.12 1.30 7.13 -2.39 -0.02 1.28 16 11 C -0.14 -1.19 5.87 32.05 0.19 -1.00 16 12 C -0.14 -0.85 7.02 31.85 0.22 -0.63 16 13 C 0.04 0.47 7.79 72.45 0.56 1.03 16 14 O -0.40 -9.17 10.61 -130.50 -1.38 -10.55 16 15 C 0.06 2.12 5.45 85.56 0.47 2.58 16 16 C 0.44 21.67 7.51 87.66 0.66 22.32 16 17 O -0.61 -34.40 13.89 -3.07 -0.04 -34.44 16 18 N -0.57 -30.11 5.29 -306.98 -1.62 -31.73 16 19 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 20 H 0.08 4.87 7.16 -2.91 -0.02 4.84 16 21 C -0.01 -0.80 5.50 84.92 0.47 -0.33 16 22 N -0.92 -50.35 13.05 21.66 0.28 -50.07 16 23 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.08 2.52 6.30 -2.38 -0.02 2.50 16 29 H 0.06 2.77 5.88 -2.39 -0.01 2.75 16 30 H 0.02 0.58 8.12 -2.39 -0.02 0.56 16 31 H 0.10 2.13 7.93 -2.39 -0.02 2.11 16 32 H 0.10 2.16 8.07 -2.39 -0.02 2.14 16 33 H 0.06 1.78 5.75 -2.39 -0.01 1.77 16 34 H 0.08 0.32 7.76 -2.39 -0.02 0.30 16 35 H 0.09 0.28 6.06 -2.39 -0.01 0.27 16 36 H 0.09 0.58 8.07 -2.39 -0.02 0.56 16 37 H 0.13 0.20 6.79 -2.38 -0.02 0.18 16 38 H 0.07 0.83 8.05 -2.39 -0.02 0.81 16 39 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.10 0.19 8.14 -2.38 -0.02 0.17 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 42 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.06 2.06 8.12 -2.39 -0.02 2.04 16 44 H 0.12 3.60 7.93 -2.39 -0.02 3.58 16 45 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 46 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -81.50 370.79 0.48 -81.02 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.26 Total: 28.40 kcal Atomic # 6 Polarization: 21.28 SS G_CDS: 7.32 Total: 28.60 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -7.94 Total: -117.82 kcal Atomic # 8 Polarization: -64.54 SS G_CDS: -1.18 Total: -65.72 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -81.50 0.48 -81.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667533540.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.270 kcal (2) G-P(sol) polarization free energy of solvation -81.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds